BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29970.2 Length=1162 Score E Sequences producing significant alignments: (Bits) Value Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2 1402 0.0 Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478 198 7e-50 > Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2 Length=966 Score = 1402 bits (759), Expect = 0.0 Identities = 901/969 (93%), Gaps = 12/969 (1%) Strand=Plus/Plus Query 98 GGTTAATCGGATCTCAATTATGGACGAAGAGGCAGCAAAACCTAGAGACTCCACCGTGAA 157 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1 GGTTAATCGGATCTCAATTATGGACGAGGAGGCAGCAAAACCTAGAGAATCCACCGTGAA 60 Query 158 TCAG---CAACATCAATAC-TATTACGGAACGTTTCAAGGCGTTGCGAATTTTCCTACTC 213 |||| ||||| |||||| || ||||||||||||||||||||||| ||||||||| ||| Sbjct 61 TCAGCAACAACAACAATACTTA-TACGGAACGTTTCAAGGCGTTGCAAATTTTCCTCCTC 119 Query 214 CTACTCCACCACCGCAATTTATGCAACCACAGCATCCGATTACTACGTTTCCTGGACATG 273 | |||| ||||| |||||| ||||||| || ||||||||| |||||||||||||||||| Sbjct 120 CGGCTCCGCCACCTCAATTTCTGCAACCGCATCATCCGATTGCTACGTTTCCTGGACATG 179 Query 274 CTTACCAAAATCTCCAAGG---TCATGGTGGTGGTGTGAATTATGCTCAAGGATTCCCAG 330 |||| || ||||||||||| | |||||||| |||||||||||||||||| ||||||| Sbjct 180 CTTATCAGAATCTCCAAGGTTTTTATGGTGGTTTTGTGAATTATGCTCAAGGTTTCCCAG 239 Query 331 TTGTTGTTCCT-GATTATACAGTGGTTGAGGTGAGACCAATGATAGAGCATGAACTTCCT 389 |||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 240 TTGTTGTT-TTAGATTATACAGTGGTTGAGGTGAGACCTATGATCGAGCATGAACTTCCT 298 Query 390 TGTTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATCATGGGCTTCTTGTTCGGTGGGATC 449 || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 299 TGCTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATTATGGGTTTCTTGTTCGGTGGGATC 358 Query 450 CCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCT 509 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 359 CCTTGGTACCTTGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCATCGCGAGAAAGCT 418 Query 510 GGTTACGTTGCCTGTTCAATCGCACTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCG 569 |||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||| Sbjct 419 GGTTACATTGCCTGTTCAATCGCTCTTCACCAGTACCAAGTCGTAGGAAGAGCTCTCCCG 478 Query 570 ACGGAGAAAGATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCAACGAACGAGGTT 629 ||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||||||| Sbjct 479 ACGGAGAAAGATGAGCAGCCGAAGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTT 538 Query 630 CTTGCCAAATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 689 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 539 CTTGCCAAATCCAAGTTCTGGTACTTCTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 598 Query 690 GGACAGATGCTAGCCATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 749 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GGACAGATGTTAGCTATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 658 Query 750 GGAATCTGGTTGAGATACCAGAGCCGTACAGGTTACCATAACATGTACAAAGAGTACCGT 809 ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||| Sbjct 659 GGAATCTGGTTGAGATACCAGAGTCGTACTGGTTACCATAACATGTACAAGGAGTTTCGT 718 Query 810 GACACTACTTTGAATGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 869 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GACACAACTTTGAACGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 778 Query 870 GTAAGGTTCCCTTGCATTCAGATTATTAAGACAGCAACAGTCCCAGCC-TCTCTCTGCAA 928 || ||||||||||||||||||||||| |||||||| |||||||||||| | |||||||| Sbjct 779 GTCAGGTTCCCTTGCATTCAGATTATCAAGACAGCTACAGTCCCAGCCAAC-CTCTGCAA 837 Query 929 GAGGGAAAGCACGAAGCAGTTTCACAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 988 ||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 838 GAGAGAGAGCACTAAGCAGTTTCATAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 897 Query 989 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCAACAAGCCTAACTTGTT 1048 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 898 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCTCCAAGCCTAACTTGTT 957 Query 1049 TATGTAGAA 1057 ||||||||| Sbjct 958 TATGTAGAA 966 > Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478 Length=171 Score = 198 bits (107), Expect = 7e-50 Identities = 140/155 (90%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 537 CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAG-ATGAGCAACCAAAGAT 595 ||||||||||||||||| | | ||||||||||||||||| ||| ||||||| || ||||| Sbjct 19 CACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AAGAATGAGCAGCCGAAGAT 77 Query 596 TTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 654 ||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 78 TTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 137 Query 655 ACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA 688 |||||||||||| ||||||||||||| | ||||| Sbjct 138 TCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA 171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43345756629 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5