BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29970.2
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2 1402 0.0
Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478 198 7e-50
> Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2
Length=966
Score = 1402 bits (759), Expect = 0.0
Identities = 901/969 (93%), Gaps = 12/969 (1%)
Strand=Plus/Plus
Query 98 GGTTAATCGGATCTCAATTATGGACGAAGAGGCAGCAAAACCTAGAGACTCCACCGTGAA 157
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1 GGTTAATCGGATCTCAATTATGGACGAGGAGGCAGCAAAACCTAGAGAATCCACCGTGAA 60
Query 158 TCAG---CAACATCAATAC-TATTACGGAACGTTTCAAGGCGTTGCGAATTTTCCTACTC 213
|||| ||||| |||||| || ||||||||||||||||||||||| ||||||||| |||
Sbjct 61 TCAGCAACAACAACAATACTTA-TACGGAACGTTTCAAGGCGTTGCAAATTTTCCTCCTC 119
Query 214 CTACTCCACCACCGCAATTTATGCAACCACAGCATCCGATTACTACGTTTCCTGGACATG 273
| |||| ||||| |||||| ||||||| || ||||||||| ||||||||||||||||||
Sbjct 120 CGGCTCCGCCACCTCAATTTCTGCAACCGCATCATCCGATTGCTACGTTTCCTGGACATG 179
Query 274 CTTACCAAAATCTCCAAGG---TCATGGTGGTGGTGTGAATTATGCTCAAGGATTCCCAG 330
|||| || ||||||||||| | |||||||| |||||||||||||||||| |||||||
Sbjct 180 CTTATCAGAATCTCCAAGGTTTTTATGGTGGTTTTGTGAATTATGCTCAAGGTTTCCCAG 239
Query 331 TTGTTGTTCCT-GATTATACAGTGGTTGAGGTGAGACCAATGATAGAGCATGAACTTCCT 389
|||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 240 TTGTTGTT-TTAGATTATACAGTGGTTGAGGTGAGACCTATGATCGAGCATGAACTTCCT 298
Query 390 TGTTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATCATGGGCTTCTTGTTCGGTGGGATC 449
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 299 TGCTGTGGCTTGGGCATGGGCTGGTTTCTGTTTATTATGGGTTTCTTGTTCGGTGGGATC 358
Query 450 CCTTGGTACCTCGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCACCGCGAGAAAGCT 509
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 CCTTGGTACCTTGGTGCTTTTATTGTTCTAGTCACATCTGTTGATCATCGCGAGAAAGCT 418
Query 510 GGTTACGTTGCCTGTTCAATCGCACTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCG 569
|||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 419 GGTTACATTGCCTGTTCAATCGCTCTTCACCAGTACCAAGTCGTAGGAAGAGCTCTCCCG 478
Query 570 ACGGAGAAAGATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCAACGAACGAGGTT 629
||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||||||
Sbjct 479 ACGGAGAAAGATGAGCAGCCGAAGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTT 538
Query 630 CTTGCCAAATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 689
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CTTGCCAAATCCAAGTTCTGGTACTTCTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAAT 598
Query 690 GGACAGATGCTAGCCATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 749
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGACAGATGTTAGCTATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTT 658
Query 750 GGAATCTGGTTGAGATACCAGAGCCGTACAGGTTACCATAACATGTACAAAGAGTACCGT 809
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||
Sbjct 659 GGAATCTGGTTGAGATACCAGAGTCGTACTGGTTACCATAACATGTACAAGGAGTTTCGT 718
Query 810 GACACTACTTTGAATGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 869
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GACACAACTTTGAACGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGA 778
Query 870 GTAAGGTTCCCTTGCATTCAGATTATTAAGACAGCAACAGTCCCAGCC-TCTCTCTGCAA 928
|| ||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct 779 GTCAGGTTCCCTTGCATTCAGATTATCAAGACAGCTACAGTCCCAGCCAAC-CTCTGCAA 837
Query 929 GAGGGAAAGCACGAAGCAGTTTCACAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 988
||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 GAGAGAGAGCACTAAGCAGTTTCATAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAA 897
Query 989 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCAACAAGCCTAACTTGTT 1048
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCTCCAAGCCTAACTTGTT 957
Query 1049 TATGTAGAA 1057
|||||||||
Sbjct 958 TATGTAGAA 966
> Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478
Length=171
Score = 198 bits (107), Expect = 7e-50
Identities = 140/155 (90%), Gaps = 5/155 (3%)
Strand=Plus/Plus
Query 537 CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAG-ATGAGCAACCAAAGAT 595
||||||||||||||||| | | ||||||||||||||||| ||| ||||||| || |||||
Sbjct 19 CACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AAGAATGAGCAGCCGAAGAT 77
Query 596 TTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 654
||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 78 TTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 137
Query 655 ACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA 688
|||||||||||| ||||||||||||| | |||||
Sbjct 138 TCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5