BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29980.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912808 jgi|Araly1|912808|Al_scaffold_0001_3062 1736 0.0
Ahg934049 jgi|Araly1|934049|scaffold_402037.1 760 0.0
> Ahg912808 jgi|Araly1|912808|Al_scaffold_0001_3062
Length=1122
Score = 1736 bits (940), Expect = 0.0
Identities = 1058/1115 (95%), Gaps = 8/1115 (1%)
Strand=Plus/Plus
Query 239 GTTTAGTGATCAACGGCGACTTCGAAACATCACCGTCAAGTGGCTTTCCTGACGACGGAG 298
|||| || ||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 8 GTTTGGTTATCAACGGCGACTTCGAAACATCACCGTCAAATGGCTTCCCAGACGACGGAG 67
Query 299 TAACTGACGGACCATCCGATATCCCAAGCTGGAAATCCAACGGTACGGTGGAGCTAATAA 358
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 68 TAACCGACGGACCATCCGATATCCCAAGCTGGAAATCCAACGGTACGGTGGAGCTAATCA 127
Query 359 ATTCCGGTCAAAAACAAGGCGGAATGATCCTCATTGTCCCACAAGGCCGTCACGCCGTCC 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 ACTCCGGTCAAAAACAAGGCGGAATGATCCTCATTGTCCCACAAGGCCGTCACGCCGTCC 187
Query 419 GATTAGGGAACGACGCAGAGATCAGCCAAGATCTAACGGTTGAGAAAGGTTTTGTCTATT 478
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 188 GATTAGGCAATGACGCAGAGATCAGCCAAGATCTAACGGTTGAGAAAGGTTTTGTCTACT 247
Query 479 CAGTCACGTTCAGCGCTGCTCGCACGTGCGCTCAACTCGAATCGATAAACGTGTCGGTAG 538
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 248 CAGTCACGTTCAGTGCAGCTCGCACGTGCGCTCAACTCGAATCGATAAACGTGTCGGTGG 307
Query 539 CGTCTGTGAACGCAGACGCGGACGATATGCTGGCGTCGCGGAACGTTGATTTGCAAACGC 598
|||||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||
Sbjct 308 CGTCTGTGAACGCAGACGCGGATGATATGGTTGCGTCGCGAAACGTGGATTTGCAAACGC 367
Query 599 TTTATAGCGTTCAAGGGTGGGACCCTTATGCGTGGGCGTTTGAAGCGGAAGATGATCATG 658
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 368 TGTATAGCGTTCAAGGGTGGGATCCTTATGCATGGGCGTTTGAAGCGGAAGATGATCATG 427
Query 659 TACGGTTGGTTTTTAAGAATCCGGGTATGGAAGATGATCCGACTTGTGGACCAATCATCG 718
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 428 TACGGTTGGTTTTTAAAAACCCGGGTATGGAAGATGACCCGACTTGTGGACCAATCATCG 487
Query 719 ATGACATTGCTATTAAGAAGCTCTTTACTCCTGATAAACCCAAAGATAATGCGGTGATTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ATGACATTGCTATTAAGAAGCTCTTTACTCCTGATAAACCCAAAGATAATGCGGTGATTA 547
Query 779 ATGGAGATTTCGAAGATGGTCCATGGATGTTTAGGAACACGTCTCTTGGTGTTTTACTTC 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ATGGAGATTTCGAAGAAGGTCCATGGATGTTTAGGAACACGTCTCTTGGTGTTTTACTTC 607
Query 839 CGACAAACCTCGACGAAGAAATCTCGTCTCTTCCTGGTTGGACTGTTGAATCGAACAGAG 898
||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |
Sbjct 608 CGACAAACCTCGACGAAGAAACCTCATCTCTTCCGGGTTGGACTGTTGAATCGAACAGGG 667
Query 899 CGGTTCGGTTTGTTGACTCGGATCACTTCTCTGTTCCAA-AGGGCAAACGAGCCGTCGAG 957
||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |||
Sbjct 668 CGGTTCGGTTTGTTGACTCGGATCACTTCTCAGTTCCAGGAGG-CAAACGAGCCGTTGAG 726
Query 958 CTACTCTCAGGCAAAGAAGGAATTATTTCACAAATGGTTGAGACCAAAGCAGATAAGCCG 1017
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 727 TTACTCTCAGGCAAAGAAGGCATTATTTCACAAATGGTTGAGACCAAAGCAGATAAACCG 786
Query 1018 TACATATTGTCTTTCTCACTAGGCCACGCAGGTGATAAATGCAAGGAACCATTGGCTATT 1077
|||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 787 TACACATTGACTTTCTCGCTAGGACACGCAGGTGATAAATGCAAGGAACCATTGGCTATA 846
Query 1078 ATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCATTACATGGCGCAAGCGAACTCCAGT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 847 ATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCATTACATGGCGCAAGCGAACTCTAGT 906
Query 1138 TTCGAAAAGGCCGGTTTGAATTTCACGGCTAAGGCTGATCGAACCAGAGTTGCGTTCTAC 1197
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 907 TTCGAAAAGGCCGGTTTGAATTTCACGGCTAAGGCTGATCGAACCAGAGTCGCGTTCTAC 966
Query 1198 AGTGTTTATTACAATACGAGGACTGATGATATGAGCTCCTTGTGTGGACCTGTGATCGAT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AGTGTTTATTACAATACGAGGACTGATGATATGAGCTCCTTGTGTGGACCTGTGATCGAT 1026
Query 1258 GACGTTAGAGTGTGGTTCTCCGGGTCGAAGAGAATCGGAGCTGG----G--TTTGGGTTT 1311
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1027 GACGTTAGAGTTTGGTTCTCCGGGTCGAAGAGAATCGGAGCTGGATTTGGGTTTGGGTTT 1086
Query 1312 TGGGTTTTTGTTCTTCTCGTTGTCGGTTTGGTTTA 1346
| ||||||||||||||| | | ||| |||||||||
Sbjct 1087 TCGGTTTTTGTTCTTCTTGCTATCGTTTTGGTTTA 1121
> Ahg934049 jgi|Araly1|934049|scaffold_402037.1
Length=1244
Score = 760 bits (411), Expect = 0.0
Identities = 871/1088 (80%), Gaps = 51/1088 (5%)
Strand=Plus/Plus
Query 227 CGGTTGAGGATGGTTTAGTGATCAACGGCGACTTCGAAACAT-CACCGTCAAGTGGCTTT 285
|||| || || || || ||| | ||||||||||| || || | ||||||||| |||||
Sbjct 125 CGGTCGAAGACGGCTTGGTGGTTAACGGCGACTTTGAGAC-TCCACCGTCAAACGGCTTC 183
Query 286 CCTGACGACGGAGT-AACTGACGGA--CCATCCGATATCCCAAGCTGGAAATCCAACGGT 342
||||| |||| | | | | || ||| || ||||| || || |||||| |||| | ||
Sbjct 184 CCTGATGACGCAATCATC-GA-GGAGTCC-TCCGAGATACCGAGCTGGCGATCCGATGGC 240
Query 343 ACGGTGGAGCTAAT-AAATTCCGGTCAAAAACAAGGCGGAATGATCCTCATTGT-CCCAC 400
|||||||||||||| ||| |||||||||||||||||||| |||||| | || || |||
Sbjct 241 ACGGTGGAGCTAATCAAA-TCCGGTCAAAAACAAGGCGGGATGATCTTGATCGTGCCC-G 298
Query 401 AAGGCCGTCACGCCGTCCGATTAGGGAACGACGCAGAGATCAGCCAAGATCTAACGGTTG 460
| || |||||||||||| ||||||| ||||| ||||| ||||||||||| || | || |
Sbjct 299 AGGGTCGTCACGCCGTCAGATTAGGAAACGATGCAGAAATCAGCCAAGAACTTCCCGTAG 358
Query 461 AGAAAGGTTTTGTCTATTCAGTCACGTTCAGCGCTGCTCGCACGTGCGCTCAACTCGAAT 520
||||||| | | |||| || ||||||||||| || || ||||| || || || ||||| |
Sbjct 359 AGAAAGGCTCTATCTACTCTGTCACGTTCAGTGCCGCCCGCACATGTGCACAGCTCGAGT 418
Query 521 CGATAAACGTGTCGGTAGCGTCTGT-GAACGCAGACGCGGACGATATGCTGGCGTCGCGG 579
|| | || ||||| || | | || | || | | || | | ||| || || | |
Sbjct 419 CGCTGAATGTGTCAGT-G-G-CT-TCCAATG-A-AC-C---C-ATA-----GCATCACAG 462
Query 580 AACGTTGATTTGCAAACGCTTTATAGCGTTCAAGGGTGGGACCCTTATGCGTGGGCGTTT 639
| | |||| ||||||||| | || ||||||||||||||||| || ||||| |||||||||
Sbjct 463 ACCATTGACTTGCAAACGGTCTACAGCGTTCAAGGGTGGGATCCATATGCATGGGCGTTT 522
Query 640 GAAGCGGAAGATGATCATGTACGGTTGGTTTTTAAGAATCCGGGTATGGAAGATGATCCG 699
||||| | | ||||| || ||||||||||||| ||| || || ||||| ||||||||
Sbjct 523 GAAGCAGTGGTTGATCGCGTCCGGTTGGTTTTTAGGAACCCTGGCATGGAGGATGATCCT 582
Query 700 ACTTGTGGACCAATCATCGATGACATTGCTATTAAGAAGCTCTTTACTCCTGATAAACCC 759
||||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 583 ACTTGTGGACCTATCATTGACGACATCGCCGTTAAGAAGCTCTTTACTCCTGATAAACCC 642
Query 760 AAAGATAATGCGGTGATTAATGGAGATTTCGAAGATGGTCCATGGATGTTTAGGAACACG 819
|||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 643 AAAGGCAATGCAGTGATTAATGGAGATTTTGAAGAAGGTCCATGGATGTTCAGGAACACG 702
Query 820 TCTCTT-GGTGTT-TTACTTCCGACAAACCTCGACGAAGAAATCTCGTCTCTTCCTGGTT 877
| || |||||| || |||||||||||||||||||||||||| ||||||||||| || |
Sbjct 703 ACA-TTAGGTGTTCTT-CTTCCGACAAACCTCGACGAAGAAATATCGTCTCTTCCCGGAT 760
Query 878 GGACTGTTGAATCGAACAGAGCGGTTCGGTTTGTTGACTCGGATCACTTCTCTGTTCCAA 937
|||| || ||||| ||| ||||||| |||||| ||||||| || || ||||| || ||
Sbjct 761 GGACCGTCGAATCAAACCGAGCGGTCCGGTTTATTGACTCAGACCATTTCTCGGTCCCTG 820
Query 938 AGGGCAAA-CGAGCCGTCGAGCTACTCTCAGGCAAAGAAGGAATTATTTCACAAATGGTT 996
|||| ||| ||||| | ||||| || || ||||||||||| || ||||| |||||||||
Sbjct 821 AGGG-AAAGCGAGCTTTGGAGCTTCTATCGGGCAAAGAAGGCATAATTTCTCAAATGGTT 879
Query 997 GAGACCAAAG-CAGATA-AG-CCGTACATAT-TGTCTTTCTCACTAGGCCACGCAGGTGA 1052
||||| |||| | || | | ||||||| | ||||||||||| | || |||||||| ||
Sbjct 880 GAGAC-AAAGGC-GA-ACATTCCGTACA-AGCTGTCTTTCTCATTGGGACACGCAGGGGA 935
Query 1053 TAAATGCAAGGAACCATTGGCTATTATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCA 1112
|| || |||||||| ||||| | ||||| || || || ||||| || |||||||||||
Sbjct 936 CAAGTGTAAGGAACCTTTGGCCGTAATGGCTTTTGCCGGAGATCAAGCACAGAACTTTCA 995
Query 1113 TTACATGGCGCAAGCGAACTCCAGTTTCGAAAAGGCCGGT-TTGAATTTCACGGCTAAGG 1171
||| |||||||| |||||||| |||||||||| | ||| ||||| |||||||| || |
Sbjct 996 TTATATGGCGCAGGCGAACTCTAGTTTCGAAA-GATCGGAGTTGAACTTCACGGCGAAAG 1054
Query 1172 CTGATCGAACCAGAGTT-GCGTTCTACAGTGTTTATTACAATACGAGGACTGATGATATG 1230
|||| ||||| || | | || |||||||| ||||||||||||||||||| || || |||
Sbjct 1055 CTGAACGAACGAG-GATCGCCTTCTACAGCATTTATTACAATACGAGGACGGACGACATG 1113
Query 1231 AGCTCCTTGTGTGGACCTGTGATCGATGACGTTAGAG-TGTGGTTCTCCGGGTCGAAG-A 1288
|| || ||||||||||||||||| |||||||||| || | |||||||||||||| | | |
Sbjct 1114 AGTTCATTGTGTGGACCTGTGATTGATGACGTTA-AGGTTTGGTTCTCCGGGTCTA-GTA 1171
Query 1289 GAATCGGA 1296
|||| |||
Sbjct 1172 GAATTGGA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5