BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G29990.1

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922049 jgi|Araly1|922049|scaffold_103330.1                        686    0.0  


> Ahg922049 jgi|Araly1|922049|scaffold_103330.1
Length=433

 Score =  686 bits (371),  Expect = 0.0
 Identities = 411/430 (96%), Gaps = 3/430 (1%)
 Strand=Plus/Plus

Query  57   AGACGACGACGACGAAGATGAGTTCATCGA---CTGTTCGTGATTTGCAGAGAGACCTAG  113
            |||||||| ||||||| |||||||||||||   ||||||| |||||||||||||||||||
Sbjct  4    AGACGACGGCGACGAATATGAGTTCATCGACGGCTGTTCGAGATTTGCAGAGAGACCTAG  63

Query  114  AAAACAAGGCTAATGATCTCGGCAAAATCCAGAAAGATATCGGGAAGAATCATCAGCTGA  173
            | ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  64   AGAACAAAGCCAATGATCTCGGCAAAATTCAGAAAGATATCGGGAAGAATCACCAGCTGA  123

Query  174  GAAAGAAGTATACGATCCAACTCGGTGAGAATGAGCTCGTGCTTAAGGAGTTAGATTTGC  233
            | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  124  GGAAGAAGTATACGATCCAACTCGGTGAGAATGAGCTCGTGCTTAAGGAATTGGATTTGC  183

Query  234  TGGAAGAAGATGCTAACGTCTACAAATTGATTGGTCCGGTGTTAGTGAAGCAGGATTTGG  293
            ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  184  TGGAAGAAGATGCAAACGTCTACAAATTGATTGGTCCGGTGCTAGTGAAGCAGGATTTGG  243

Query  294  CTGAAGCTAATGCAAATGTTCGTAAACGAATTGAGTACATCTCTGCTGAATTGAAACGGC  353
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  244  CTGAAGCAAATGCAAATGTTCGTAAACGAATTGAGTACATCTCTGCTGAATTGAAACGGC  303

Query  354  TTGATGCAATTCTTCAAGATATGGAAGAAAAACAAAACAACAAGAGAGAAACGATAATGA  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  304  TTGATGCAATTCTTCAAGATATGGAAGAAAAACAAAACAACAAGAGAGAAACGATAATGA  363

Query  414  AGTTACAACAAAGGCTACAAACTATCCAGGCAGGAAAAGCAAAGGCTTGATTGAGCTACT  473
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  364  AGTTACAACAAAGGCTACAATCTATCCAGGCAGGAAAAGCAAAGGCTTGATTGAGCTAGT  423

Query  474  CAGTTGCAAC  483
            ||||||||||
Sbjct  424  CAGTTGCAAC  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27257885655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5