BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30020.1 Length=474 Score E Sequences producing significant alignments: (Bits) Value Ahg473221 jgi|Araly1|473221|fgenesh2_kg.1__3175__AT1G30020.1 680 0.0 > Ahg473221 jgi|Araly1|473221|fgenesh2_kg.1__3175__AT1G30020.1 Length=471 Score = 680 bits (368), Expect = 0.0 Identities = 393/405 (97%), Gaps = 1/405 (0%) Strand=Plus/Plus Query 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA 60 Query 61 TCTCTTTGTCTTGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAACTACCCACGGGATTG 120 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 TCTCTTTGTCTAGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAGCTACCCACGGGATTG 120 Query 121 TTGCCATTGAAGGATATGACGGAAGTTGGGTACAACAAAACAAAAGGGTTTGTGTGGATG 180 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 121 TTGCCATTGAAGGATATGACAGAAGTTGGGTACAACAAAACGAAAGGGTTTGTGTGGATG 180 Query 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAGATAGGTCGCAGAGTTTTATATGAC 240 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 181 AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAAATAGGTCGCAGAGTGTTATATGAC 240 Query 241 ACGGAGATAACTGCGTTTGTTGAGGACCGCCGTATGAGGAGACTTACCGGAGTCAAAAGC 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 ACGGAGATAACTGCGTTTGTTGAGGACCGTCGTATGAGGAGACTTACCGGAGTCAAAAGC 300 Query 301 AAAGAGCTCATGATCTGGGTTCCTGTGAATGATATCTTCAT-AAAGAGAAAGATCCTGAG 359 || |||||||||||||||||||||||||| |||||||| || |||||||||||||| ||| Sbjct 301 AAGGAGCTCATGATCTGGGTTCCTGTGAACGATATCTTTATCAAAGAGAAAGATCCGGAG 360 Query 360 AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA 404 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17170015050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5