BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30020.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473221 jgi|Araly1|473221|fgenesh2_kg.1__3175__AT1G30020.1         680    0.0  


> Ahg473221 jgi|Araly1|473221|fgenesh2_kg.1__3175__AT1G30020.1
Length=471

 Score =  680 bits (368),  Expect = 0.0
 Identities = 393/405 (97%), Gaps = 1/405 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGTTAAGAGAGATGATAATAGATGAGAGTGATGACATAGAGAGCTACAGTGATCAA  60

Query  61   TCTCTTTGTCTTGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAACTACCCACGGGATTG  120
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   TCTCTTTGTCTAGATAAAGCCAAGGAGCTTCTTGCTCTCATCAAGCTACCCACGGGATTG  120

Query  121  TTGCCATTGAAGGATATGACGGAAGTTGGGTACAACAAAACAAAAGGGTTTGTGTGGATG  180
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  121  TTGCCATTGAAGGATATGACAGAAGTTGGGTACAACAAAACGAAAGGGTTTGTGTGGATG  180

Query  181  AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAGATAGGTCGCAGAGTTTTATATGAC  240
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  181  AGGATGAGAAGCAAGATTGAGCATACATTCCGTGAAATAGGTCGCAGAGTGTTATATGAC  240

Query  241  ACGGAGATAACTGCGTTTGTTGAGGACCGCCGTATGAGGAGACTTACCGGAGTCAAAAGC  300
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  241  ACGGAGATAACTGCGTTTGTTGAGGACCGTCGTATGAGGAGACTTACCGGAGTCAAAAGC  300

Query  301  AAAGAGCTCATGATCTGGGTTCCTGTGAATGATATCTTCAT-AAAGAGAAAGATCCTGAG  359
            || |||||||||||||||||||||||||| |||||||| || |||||||||||||| |||
Sbjct  301  AAGGAGCTCATGATCTGGGTTCCTGTGAACGATATCTTTATCAAAGAGAAAGATCCGGAG  360

Query  360  AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA  404
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AAGATCACCTTTGCTAATACCACCGGCCTGTCACGAACATTTAAA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5