BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30040.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473223 jgi|Araly1|473223|fgenesh2_kg.1__3177__AT1G30040.1 2093 0.0
> Ahg473223 jgi|Araly1|473223|fgenesh2_kg.1__3177__AT1G30040.1
Length=1283
Score = 2093 bits (1133), Expect = 0.0
Identities = 1203/1237 (97%), Gaps = 4/1237 (0%)
Strand=Plus/Plus
Query 108 TACAAAAACCAAACATGGTGGTTTTGCCACAGCCAGTCACTTTAGATAACCACATCTCCC 167
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 50 TACAAAAACCGAACATGGTAGTTTTGCCACAGCCAGTCACTTTAGAAAACCACATCTCCC 109
Query 168 TAATCCCCACATACAAACCGGTTCCGGTTCTCACTTCCCATTCAATCCCCGTCGTCAACC 227
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 110 TAATCCCAACATATAAACCGGTTCCGGTTCTCACTTCCCATTCAATCCCCGTCGTGAACC 169
Query 228 TAGCCGATCCGGAAGCGAAAACCCGAATCGTAAAAGCCTGCGAGGAGTTCGGGTTCTTCA 287
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 170 TAACCGATCCGGAAGCGAAAACCCGAATCGTAAAAGCCTGTGAGGAGTTCGGGTTCTTCA 229
Query 288 AGGTCGTAAACCACGGAGTCCGACCCGAACTCATGACTCGGTTAGAGCAGGAGGCTATTG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 AGGTCGTAAACCACGGAGTCCGACCCGAACTCATGACTCGGTTAGAGCAGGAGGCTATTG 289
Query 348 GCTTCTTCGGCTTGCCTCAGTCTCTTAAAAACCGGGCCGGTCCACCTGAACCGTACGGTT 407
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 290 GCTTCTTCGCCTTGCCTCAGTCTCTTAAAAACCGGGCCGGTCCGCCTGAACCGTACGGTT 349
Query 408 ATGGTAATAAACGGATTGGACCAAACGGTGACGTTGGTTGGATTGAGTATCTCCTCCTCA 467
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 350 ATGGTAATAAACGGATTGGACCAAACGGTGACGTTGGTTGGATTGAGTATATCCTCCTCA 409
Query 468 ATGCTAATCCTCAGCTCTCCTCTCCTAAAACCTCCGCCGTTTTCCGTCAAACCCCTCAAA 527
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ATGCTAACCCTCAGCTCTCCTCTCCTAAAACCTCCGCCGTTTTCCGTCAAACCCCTCAAA 469
Query 528 TTTTCCGTGAGTCGGTGGAGGAGTACATGAAGGAGATTAAGGAAGTGTCGTACAAGGTGT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TTTTCCGTGAGTCGGTGGAGGAGTACATGAAGGAGATTAAGGAAGTGTCGTACAAGGTGT 529
Query 588 TGGAGATGGTTGCCGAAGAACTAGGGATAGAGCCAAGGGACACTCTGAGTAAAATGCTGA 647
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 530 TGGAGATGGTGGCTGAAGAACTAGGGATAGAGCCAAGAGACACTCTGAGTAAAATGCTGA 589
Query 648 GAGATGAGAAGAGTGACTCGTGCCTGAGACTAAACCATTATCCGGCGGCGGAGGAAGAGG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GAGATGAGAAGAGTGACTCGTGCCTGAGACTAAACCATTATCCGGCGGCGGAGGAAGAGG 649
Query 708 CGGAGAAGATGGTGAAGGTGGGGTTTGGGGAACACACAGACCCACAGATAATCTCAGTGC 767
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 650 CGGAGAAGACGGTGAAGGTGGGGTTTGGGGAACACACAGACCCACAAATAATCTCAGTGC 709
Query 768 TAAGATCTAATAACACGGCGGGTCTTCAAATCTGTGTGAAAGATGGAAGTTGGGTCGCTG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TAAGATCTAATAACACGGCGGGTCTTCAAATCTGTGTGAAAGATGGAAGTTGGGTCGCTG 769
Query 828 TCCCTCCTGATCACTCTTCTTTCTTCATTAATGTTGGAGATGCTCTTCAGGTTATGACTA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TCCCTCCTGATCACTCTTCTTTCTTCATTAATGTTGGAGATGCTCTTCAGGTTATGACTA 829
Query 888 ACGGGAGGTTCAAGAGTGTTAAACACAGGGTCTTAGCCGATACAAGGAGATCGAGGATTT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ACGGGAGGTTCAAGAGTGTTAAACACAGGGTCTTAGCCGATACAAGGAGATCGAGGATTT 889
Query 948 CAATGATATATTTCGGCGGACCGCCATTGAGCCAGAAGATCGCACCATTGCCATGCCTTG 1007
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 890 CAATGATATATTTCGGGGGACCGCCATTGAGCGAGAAGATCGCACCATTGCCATGCCTTG 949
Query 1008 TCCCTGAGCAAGATGATTGGCTTTACAAAGAATTCACTTGGTCTCAATACAAATCTTCTG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TCCCTGAGCAAGATGATTGGCTTTACAAAGAATTCACTTGGTCTCAATACAAATCTTCTG 1009
Query 1068 CTTACAAGTCTAAGCTTGGTGATTATAGACTTGGTCTCTTTGAGAAACAACCTCTTCTCA 1127
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1010 CTTACAAGTCTAAGCTTGGTGATTATAGACTTGGTGTCTTTGAGAAACAACCTCTTCTCA 1069
Query 1128 ATCATAAAACCCTTGTATGAGAGTAGTCATGATGATCTTTATCATCCTTTGTACGATAGA 1187
|||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||| |
Sbjct 1070 CTCATAAAACCATTGTATGAGAGAAGTCATGATGATCCCTATCATCCTTTGTATGATA-A 1128
Query 1188 AAGTCATAATCACAAAAA-GAAGGAAATGGATAGTGTTTTGGATTAGCTTTTTTATGTTT 1246
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||
Sbjct 1129 AAGTCATAATCACAAAAAAGAAGGAAATGGATAGTGTTTTGGATTAG-TTTTT-ATTTTT 1186
Query 1247 GGTATGTTTTTCATTAGGTACAAAAGCTTTAGGCTTTGCTTAGAGTTTGACCCAACCAAA 1306
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1187 GGTATGTTTTTCATTAGGTACAAAAGCATTAGGCTTTGCTTAGAGTTTGACCCAACCAAA 1246
Query 1307 CCTAACTTTTGTATCTTCTCGTCTTCTTCTTCTTTTT 1343
|||| ||||||||||||||||||||||||||| ||||
Sbjct 1247 CCTACCTTTTGTATCTTCTCGTCTTCTTCTTCCTTTT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5