BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30050.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473224 jgi|Araly1|473224|fgenesh2_kg.1__3178__AT1G30050.1 2015 0.0
> Ahg473224 jgi|Araly1|473224|fgenesh2_kg.1__3178__AT1G30050.1
Length=1306
Score = 2015 bits (1091), Expect = 0.0
Identities = 1237/1305 (95%), Gaps = 20/1305 (2%)
Strand=Plus/Plus
Query 39 TTATTAAAGAACGTGAATTACGTAAAACCAGAGGATCATAGATTGTAGAATTTGTGATaa 98
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 18 TTATTAAAGAACGTGAATTACGTAAAACCAGAGGATCATAGATTGTAAAAATTGTGATAA 77
Query 99 acaaatttcttaatatcaacaaaaacaaaagcc--agaga-aagaatcaaaagaacaaaa 155
|||||||||||||||||||||||||| || || | | | ||||| ||||||||||||
Sbjct 78 ACAAATTTCTTAATATCAACAAAAAC--AA-CCAAAAATATAAGAAGAAAAAGAACAAAA 134
Query 156 atGGCGTATCGGAGAAGACAAGGGATCACAAGAGCTTCAACATTCAAAGAAGACATCTAT 215
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 135 ATGGCGTATCGGAGAAGACAAGGGATCACGAGAGCTTCAACATTCAAGGAAGACATCTAT 194
Query 216 CATCAACCACCAGATCCCGATCACGGTGATCTCAAAGGTCACTCCAATGGCGGATCCTTC 275
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CATCAACCACCAGATCACGATCACGGTGATCTCAAAGGTCACTCCAATGGCGGATCCTTC 254
Query 276 AGATCTTCTCAATCTTTCTCTTCTCATTCCTCCCTTGCCGCTCAAGCAATCCGTGCCTCC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 255 AGATCTTCTCAATCTTTCTCTTCTCATTCCTCCCTTGCCGCTCAAGCAATCCGCGCCTCC 314
Query 336 TCTCAGGCTCAAGGATTCACCGCTTACGAGGATAAGAGCGAGAGTCGTGGATTCTGGGGA 395
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 315 TCTCAGGCTCAAGGATTCACGGCTTACGAAGATAAGAGCGAGAGTCGTGGATTCTGGGGA 374
Query 396 ATCTTAGCTCAGAAAGCTAAATCAATCCTTGAAGACGAAGAAGAGcaacaacaacaacaa 455
||||||||||| ||||||||||||||||| |||||||||| | || || ||
Sbjct 375 ATCTTAGCTCAAAAAGCTAAATCAATCCTCGAAGACGAAG-A-AG----------AAGAA 422
Query 456 caacaacaaAACGACGTCATTTTCGAGCCCTCGAATCCAACCATACGCAAAAGCATAGAC 515
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 423 CAACAACAAAACGACGTCGTTTTCGAACCCTCGAATCCAACCATACGCAAAAGCATAGAT 482
Query 516 AAGATCACAACGTCTCTGAATCATATCGGAGATAGTTTCGAGAAAGCGTTCGAGGAAGGT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AAGATCACAACGTCTCTGAATCATATCGGAGATAGTTTCGAGAAAGCGTTCGAGGAAGGT 542
Query 576 CGTACGATCGTAGCTTCACAAATCAGACGAAAAGGATCTGATCTAATCGATTCAGACAAC 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CGTACGATCGTAGCTTCACAAATCAGACGAAAAGGATCTGATCTAATCGATTCAGACAAC 602
Query 636 AACAATTATCACCAATCCTCTGGATCAAGCAGTCCATGGCAACCACTAACACAACCAAAC 695
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 603 AACAATTATAACCAATCCTCTGGATCAAGCAGTCCATGGCAACCATTAACACAACCAAAC 662
Query 696 CCACGTGAGTCTCAACTCAAAGCGTCACGTGATGTAGCCATGGCTACAGCAGCTAAAGCC 755
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 663 CCACATGAGTCTCAACTCAAAGCTTCACGTGATGTAGCCATGGCTACAGCAGCTAAAGCC 722
Query 756 AAGCTTCTCCTCCGTGAATTGAAAACGGTTAAAGCCGATTTAGCTTTCGCTAAAGAACGT 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AAGCTTCTCCTCCGTGAATTGAAAACGGTTAAAGCCGATTTAGCTTTCGCTAAAGAACGA 782
Query 816 TGTTCTCAATTGGAAGAAGAAAACAAACGGTTAAGAGATAACCGGGATAAAGGTAACAAC 875
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 783 TGCGCGCAATTGGAAGAAGAAAACAAACGGTTAAGAGATAACCGAGATAAAGGTAATAAC 842
Query 876 AATCCAGCTGATGATGACCTAATTAGGCTTCAGCTAGAGACATTGCTTG-CAGAGAAAGC 934
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 843 AATCCAGCTGATGATGACCTAATTAGGCTTCAGCTAGAGACATTA-TTGGCAGAGAAAGC 901
Query 935 GAGATTAGCACACGAAAACTCTATTTACGCTAGAGAAAACCGATTCTTGAGAGAAATCGT 994
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 902 GAGATTAGCGCACGAAAACTCGATTTACGCTAGAGAAAACCGATTCTTGAGAGAAATCGT 961
Query 995 CGAATATCATCAGTTAACAATGCAAGATGTTGTTTATATCGATGAAGGTATTGAAGAAGT 1054
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 962 CGAATATCATCAGTTAACAATGCAAGATGTTGTTTATATAGATGAAGGTATTGAAGAAGT 1021
Query 1055 TGCTGAAGTGAATCCTTCTATCACTAGAACGCTTTCTATGGCTTCGTATTCGGCTTCTGA 1114
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGCTGAAGTTAATCCTTCAATCACTAGAACGCTTTCTATGGCTTCGTATTCGGCTTCTGA 1081
Query 1115 ATTGCCTTCGATCTCGCCTTCGCCTTCTTCCCCTGCTTCGCCTTCTCGGCTTTCGGTTTC 1174
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 ATTGCCTTCAATCTCGCCTTCGCCTTCTTCCCCTGCTTCGCCTTCTCGGCTTTCGGTTTC 1141
Query 1175 TACAGACATTTATCCGATTTTGGTTCAGCAGAGTTCGACTAACGATATTACGGTTGAGAG 1234
||| |||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||
Sbjct 1142 TACCGACATTTATCCGGTTTTGGTTCAGCAGAGTTCGGCTAGTGATGTTGCGGTTGAGAG 1201
Query 1235 TCCTAAACCGGTTCGACCACCTTCTTTGGGATACACAGATGATGGTAAGAGACCATCATC 1294
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1202 TCCTAAACCGGTACGACCAATTTCTTTGGGATACACAGATGATGGTAAGAGACCATCGTC 1261
Query 1295 ACAGCTACCATCGTCACAGCTCTCTGTTTAGAATTGATGACTTTT 1339
||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1262 ACAGCTACCATCGTCGCAGCTCTCTGTTTAGAATTGATGACATTT 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5