BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30070.2
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922056 jgi|Araly1|922056|scaffold_103337.1 966 0.0
> Ahg922056 jgi|Araly1|922056|scaffold_103337.1
Length=708
Score = 966 bits (523), Expect = 0.0
Identities = 661/723 (91%), Gaps = 28/723 (4%)
Strand=Plus/Plus
Query 49 GCTGCTCTAAGATTATATCCATGGCGGAAGAAGTTGGGCTTGATTTGGAAGAACTCAGGC 108
||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 GCTGCTCGAAGATTATTTCCATGGCGGAAGAAGTTGCGCTTGATTTGGATGAACTCAGGC 60
Query 109 AACTCCAGAACATCGCCAAGAGACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAA 168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AACTCCAGAACATCGCCAAGAGACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCCA 120
Query 169 ACTTGGAGAAGCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAA-CCAAAGGTACCAGTT 227
||||||||||||||||||||||||||||| |||||| ||| ||| ||| |||| ||||||
Sbjct 121 ACTTGGAGAAGCTGAGAGACTCTGCAGTCGGTTCAAGTGC-AAAGCCAGAGGTCCCAGTT 179
Query 228 ACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCATTGAACTAT 287
|||||||||||||||||||| ||||||| ||||||||||| ||| |||| ||||||||
Sbjct 180 ACAGTTCCTGCACCGGTTTCATCTTCGGTTAAGCCGGTTTATTC---GGCAGTGAACTAT 236
Query 288 GTAACTCTCGGAACATTCAGCTGGGATCAAGACAATGACAAAGTCAAGATGTACATATCC 347
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 GTAACTCTCGGAACATTCAGCTGGGATCAAGACAATGAAAAAGTCAAGATGTACATATCT 296
Query 348 TTGGAAGGTGTTGATGAGGACAAGGTTCAAGCTGAGTTCAAGCCAATGTCTTTAGACATC 407
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 297 TTGGAAGGTGTTGATGAGGACAAGGTTCAAGCCGAGTTCAAGCCAATGTCTTTGGACATC 356
Query 408 AAGATCCATGATGTACAAGGAAAAAATTACCGATGTGCCATCCCGAAGTTGTGTAAGGAG 467
|| ||||||||||| ||||| || |||||| ||||||||||||| |||||| ||| |||
Sbjct 357 AAAATCCATGATGTTCAAGGGAAGAATTACAGATGTGCCATCCCCAAGTTGCATAAAGAG 416
Query 468 ATTATGCCTGAGAAATGTAAAGTGCTTGTAAAGCCTAAGAGGATAGTTATCACTATGGTC 527
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 417 ATTGTGCCAGAGAAATGTAAAGTGCTTGTAAAGCCTAAGAGGATAGTTATCACAATGTTC 476
Query 528 AAGTCTTCCAGAGGAAACTGGCTTGACATTCACCACAAAGAAGACAAGTACTGTTTGTTG 587
|||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 477 AAGTCTTCCAGAGGAAACTGGCTTGACATTCACCACAAAGAAGACAAG-A-T-------- 526
Query 588 TTTGTTCAGATTAAACCGAGTTTGGAGAAAGAGAAAGACCCAATGGCTGGAATTATGGGG 647
| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 -------A-A--AA-CCGAGTTTGGAGAAAGAGAAAGACCCAATGGCTGGAATTATGGGC 575
Query 648 ATGATGAAGAACTTGTATGAGGATGGAGATGAAGAAATGAAGAAGACAATAGCTAAAGCC 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 ATGATGAAGAACTTGTATGAGGATGGAGATGAAGAAATGAAGAAGACAATAGCTAAAGCT 635
Query 708 TGGACAGATGCTAGGTCAGGCAAAGCAGCAGATCCTTTAAAAGGACTATGAAGCT-CATG 766
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||
Sbjct 636 TGGACAGATGCTAGGTCAGGCAAAGCAGCTGATCCCTTAAAAGGACTATGAAGCTTC-TG 694
Query 767 TGA 769
|||
Sbjct 695 TGA 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35568681561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5