BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30080.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912819 jgi|Araly1|912819|Al_scaffold_0001_3073 1733 0.0
> Ahg912819 jgi|Araly1|912819|Al_scaffold_0001_3073
Length=1131
Score = 1733 bits (938), Expect = 0.0
Identities = 1018/1058 (96%), Gaps = 0/1058 (0%)
Strand=Plus/Plus
Query 49 ATGTCTAACATGTTTAGCAGAATTGCCATGACCAACTCTATCGTTCTTCTTCTATTTTCC 108
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGTCTAAAATGTTTAGCAGAATTGCCATGACCAACTCTATTGTTCTTCTTCTGTTTTCC 60
Query 109 TTGACTTTCTTAGAACATGGATTGTTGTTTCAAAGGGTCTCCTCTCTTGGCATCAACTAT 168
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 TTAACTTTCTTAGAACATGGATTGTTGTTTCAGAGGGTCTCCTCTCTTGGTATCAACTAT 120
Query 169 GGTCAAGTCGGCGACAATCTTCCTCCACCGGACAAAGTTCTACAACTCTTGAGTTCACTC 228
||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 121 GGTCAAGTCGGCGACAACCTTCCTCCACCGGACAAAGTTTTACAACTTTTGAGTTCACTC 180
Query 229 CATATCAATAAGACAAGAATCTATGACACAAACCCTCGAGTGTTAACCTCATTTGCCAAT 288
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 CATATCAATAAGACAAGAATCTACGACACAAACCCTCGAGTCTTAACCTCATTTGCCAAT 240
Query 289 TCCAATATCGAGCTCTTTGTCACCGTCGAAAATGAAATGCTTCCCAGCTTAGTAGACCCT 348
||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TCCAACATCGAGCTGTTCGTCACCGTGGAAAATGAAATGCTTCCCAGCTTAGTAGACCCT 300
Query 349 CAACAAGCTCTCCAATGGGTCACTACCCGTATCAAACCCTACTTTCCGGCCACCAAGATC 408
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACAAGCTCTCCAATGGGTCAATACCCGTATCAAACCCTACTTTCCGGCCACCAAGATC 360
Query 409 GGTGGTATCGCCGTCGGCAACGAACTATACACTGACGATGACTCAAGCCTTATAGGGTAT 468
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGGGTATCGCCGTCGGCAACGAACTATACACTGACGATGACTCAAGCCTTATAGGGTAT 420
Query 469 CTTATGCCTGCAATGATGAGCATTCATGGGGCTTTGGTCCAAACCGGACTAGACAAGTAC 528
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 CTTGTGCCTGCAATGATGAGCATTCATGGTGCTTTGGTCCAAACCGGACTAGACAAGTAC 480
Query 529 ATTCAAGTATCGACTCCGAACTCACTATCCGTCCTTCAAGAATCTTACCCTCCATCCGCC 588
||||||||||| |||||||| |||||||| || |||||||||||||||||||| || |||
Sbjct 481 ATTCAAGTATCAACTCCGAATTCACTATCGGTTCTTCAAGAATCTTACCCTCCCTCTGCC 540
Query 589 GGATGTTTTAGGCCGGAAGTAGCTGGCGTAATGACACAGCTACTAGGTTTCTTGCGTAAC 648
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 541 GGATGTTTTAGGCCGGAGGTAGCTGGCGTAATGACGCAGCTCCTAGGTTTCTTGCGTAAC 600
Query 649 ACGAATTCCCCCTTCTGGATCAACGCTTACCCTTACTTCGCTTACAAGGATTCCCCAACA 708
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGAAATCCCCCTTCTGGATCAACGCTTACCCTTACTTCGCTTACAAGGATTCCCCAACA 660
Query 709 AAGATCCCATTAGACTACGTCCTCTTCAACCCTAACCCTGGAATGGTTGACCCCTATACC 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 AAGATCCCATTAGACTACGTCCTCTTCAACCCTAACCCTGGAATGGTTGACCCCTACACC 720
Query 769 AAGTACCGCTATGACAACATGCTCTACGCTCAAGTAGACGCTGTGATCTTTGCCATGGCG 828
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 AAGTACCACTATGACAACATGCTCTACGCTCAAGTAGACGCTGTGATCTTCGCCATGGCG 780
Query 829 AGGCTTGGCTTCAAAGACATCGAAGTTGGGGTCTCGGAGACTGGATGGCCGTCTAAAGGC 888
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 AGGCTTGGCTTCAAAGACATCGAAGTTGGGGTCTCAGAGACTGGATGGCCGTCTAAAGGC 840
Query 889 GATGGAGATGAGGTTGGAGCCACTGTGGCCAACGCAGCCGTTTATAACAAAAATATTCTA 948
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 841 GATGGAGATGAGGTTGGAGCTACTGTGGCCAACGCAGCGGTTTATAACAAAAATCTTCTA 900
Query 949 AGGAGACAACTTCAAAATGAAGGAACGCCATTGAGACCAAACTTGAGTTTTGATGTTTAT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGAGACAACTTCAAAATGAAGGAACGCCATTGAGACCAAACTTGAGTTTTGATGTTTAT 960
Query 1009 CTATTTGCTCTTTTCAATGAAGACCTTAAACCAGGACCAACCTCTGAGAGGAATTATGGA 1068
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 CTCTTTGCTCTTTTCAATGAAGACCTTAAACCAGGACCAACCTCTGAGAGGAACTATGGA 1020
Query 1069 TTGTATCAGCCTGATGAGACCATGACTTACAATGTAGG 1106
|| ||||||||||||||||||||| |||||||||||||
Sbjct 1021 TTATATCAGCCTGATGAGACCATGGCTTACAATGTAGG 1058
Score = 122 bits (66), Expect = 5e-27
Identities = 72/75 (96%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1188 GGCTTTAAAGAAGGGAAAGCAACGGTTGATGTATTGGACATGCGTTTATTTGTTGGCCAT 1247
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1057 GGCTATAAAGAAGGGAAAGCAACAATTGATGTATTGGACATGCGTTTATTTGTTGGCCAT 1116
Query 1248 TCACATGCTAATTAG 1262
|||||||||||||||
Sbjct 1117 TCACATGCTAATTAG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5