BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30090.1
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473227 jgi|Araly1|473227|fgenesh2_kg.1__3181__AT1G30090.1 2302 0.0
> Ahg473227 jgi|Araly1|473227|fgenesh2_kg.1__3181__AT1G30090.1
Length=1514
Score = 2302 bits (1246), Expect = 0.0
Identities = 1436/1527 (94%), Gaps = 16/1527 (1%)
Strand=Plus/Plus
Query 17 aaaaaaaaTGAGGAAGAGCTGAAAGATTCGCGACGAAGCAAAACGACAGTG-TTATCTAT 75
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 AAAAAAAATGAGGAAGAGCTGAAAGATTCGCGACGAAGCAAAACAACAGTGTTTATCTAT 60
Query 76 CGCCGCCTTGTTGTTCTGTTTAACAAGTGTAGAGGAACCAAAGTTGAAAACTTTGAACTT 135
|||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| | |
Sbjct 61 CGCCGCCTTGTTGTTCTGTTAAACAAGAGTAGAGGAACCAAAGTTGGAAACTTTGATC-T 119
Query 136 CCCATTGATTTTAATGTTAATTACTGATCATTCGAATCTGAAATTGAAG-CATATGAGTG 194
||| | | |||||||||||||||| ||||||||| ||| |||| | |||| ||
Sbjct 120 CCC----A---T--TGTTAATTACTGATCACTCGAATCTGGAATAGAAGTAAAATGAATG 170
Query 195 CTTAATCTGTGAGTGTTAGAAGAAGTAGAAGAAGATGCAGAGGGTTAGGGTTTCATCTCA 254
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 171 CTTAATCTCTGAGTGTTAAAAGAAGAAGAAGAAGATGCAGAGGGTTAGGGTTTCATCTCA 230
Query 255 AAGAGCAGTTGTGCATAAGCTTGGTGATTCTCAGATGACATTATCTCCCAAATTTAGAGT 314
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 231 AAGAGCAGCTGTGCATAAGCTTGGTGATTCTCAGATGACTTTATCTCCCAAATTTAGAGT 290
Query 315 AGCTGCATCGATACAATCGACATTGTTCGATAGATCATCGGAATTAGAACTGTCTCTTAG 374
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 291 AGCTGCATCGATTCAATCGACATTGTTTGATAGATCATCGGAATTAGAACTGTCTCTTAT 350
Query 375 AGGAGAGCCCTTGATTCCCGGTTTACCAGACGATGTTGCGCTTAACTGTCTTTTACGGGT 434
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 351 AGGAGAACCCTTGATTCCCGGTTTACCTGACGATGTTGCGCTTAACTGTCTTTTACGGGT 410
Query 435 TCCAGTTCAAAGCCATGTATCGAGTAAATCCGTGTGCAAGAGATGGCATCTTTTGTTTGG 494
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 411 TCCAGTTCAAAGCCATGTATCGAGTAGATCCGTGTGCAAGAGATGGCATCTCTTGTTTGG 470
Query 495 TACTAAAGAGACGTTTTTCGCTAAGCGTAAGGAGTTCGGGTTTAAAGACCCGTGGCTGTT 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 471 TACTAAAGAGACGTTTTTCGCTAAGCGTAAGGAGTTCGGGTTTAAAGACCCGTGGTTGTT 530
Query 555 CGTTGTCGGGTTTAGTAGATGCACTGGGAAGATCCAGTGGAAGGTTTTGGATTTGAGGAA 614
||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 531 CGTGGTTGGGTTTAGTAGATGCACTGGGAAAATCCAATGGAAGGTTTTGGATTTGAGGAA 590
Query 615 TCTCACTTGGCATGAAATCCCTGCTATGCCTTGCAGAGATAAAGTTTGTCCTCACGGTTT 674
|||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 591 TCTCACTTGGCACGAAATCCCGGCTATGCCTTGTAGAGACAAAGTTTGTCCTCACGGTTT 650
Query 675 TAGATCGGTTTCGATGCCTCGCGAAGGTACTATGTTTGTATGTGGTGGAATGGTTTCGGA 734
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 651 CAGATCGGTTTCGATGCCTCGGGAAGGTACTATGTTTGTATGTGGCGGAATGGTTTCGGA 710
Query 735 TTCTGATTGTCCTCTTGATTTGGTGTTGAAGTATGATATGGTGAAGAATCATTGGACTGT 794
||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 711 TTCGGATTGCCCTCTTGATTTGGTGTTGAAGTACGATATGGTGAGGAATCATTGGACTGT 770
Query 795 CACTAACAAGATGATAACCGCGAGGTCGTTTTTCGCTAGCGGTGTGATCGATGGGATGAT 854
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 771 CACGAAAAAAATGATAACCGCGAGGTCGTTTTTTGCTAGCGGTGTGATCGATGGGATGAT 830
Query 855 ATACGCGGCAGGTGGAAATGCTGCGGATTTATATGAGCTTGATTGTGCCGAGGTTTTGAA 914
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 831 ATACGCGGCAGGTGGAAATGCTGCGGATTTATATGAGCTTGATTCTGCCGAGGTTTTGAA 890
Query 915 CCCTTTGGATGGGAATTGGCGGCCAGTTTCGAACATGGTAGCTCATATGGCGTCTTACGA 974
|||||||||||||||||||||||||||||| || ||||| || || ||||||||||||||
Sbjct 891 CCCTTTGGATGGGAATTGGCGGCCAGTTTCAAATATGGTCGCACACATGGCGTCTTACGA 950
Query 975 CACAGCGGTTTTAAACGGGAAGCTTTTGGTAACGGAAGGATGGTTATGGCCGTTCTTTGT 1034
|||||| || |||||||||||||| ||||| || ||||||||| ||||||||||||||||
Sbjct 951 CACAGCAGTCTTAAACGGGAAGCTCTTGGTGACAGAAGGATGGCTATGGCCGTTCTTTGT 1010
Query 1035 ATCCCCGAGAGGTCAAGTTTATGACCCGAGGACGGATCAATGGGAAACAATGTCAATGGG 1094
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 ATCCCCAAGAGGTCAAGTTTATGACCCGAGGACGGATCAATGGGAAACAATGTCAATGGG 1070
Query 1095 GCTAAGAGAAGGATGGACCGGGACGAGTGTCGTGATTTATGATCGGTTGTTTATAGTTTC 1154
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1071 GTTAAGAGAAGGATGGACCGGGACAAGTGTCGTGATTTATGATCGGTTGTTTATAGTTTC 1130
Query 1155 GGAGTTAGAGAGAATGAAGATGAAGGTTTATGATCCGGTTACAGATTCGTGGGAGACGAT 1214
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1131 GGAATTAGAGAGAATGAAGATGAAGGTTTATGATCCGGTTACGGATTCGTGGGAGACGAT 1190
Query 1215 TAACGGACCGGAATTGCCTGAGCAGATTTGTAGACCGTTTGCGGTTAACTGTTATGGGAA 1274
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1191 TAACGGACCGGAATTGCCTGAGCAGATTTGTAGACCGTTTGCGGTTAACTGTTACGGGAA 1250
Query 1275 CAGAGTATATGTGGTTGGTAGGAATCTTCATCTCGCGGTTGGGAATATTTGGCAGTCGGA 1334
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CAGAGTATTTGTGGTTGGTAGGAATCTTCATCTCGCGGTTGGGAATATTTGGCAGTCGGA 1310
Query 1335 GAATAAGTTTGCTGTGAGGTGGGAGGTTGTTGAGTCGCCGGAGCGTTATGCAGATATAAC 1394
||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1311 GAATAAGTTTGGTGTGAGGTGGGAGGTCGTTGAGTCGCCGGAGCGTTATGCTGGTATAAC 1370
Query 1395 TCCATCGAATTCTCAGATTCTTTTTGCTTAAAAGAGATTTGATCAGTCTGTTTGGTATGG 1454
||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||
Sbjct 1371 TCCATCGAATTCTCAGATTCTTTTTGCTTAAAAGAGATTTGATAAATCTGTTTACTTTGG 1430
Query 1455 -TTTCCAAATGTCTGTGAACCATATTGTATGAATAAGTAAAAACTTGTCTTAGTAACATC 1513
|||| || ||| |||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1431 ATTTC-AATTGTTTGTGAACCATATTGTATGAATAAGTAAA--CTTGTCTTGGAAACATC 1487
Query 1514 ATCATGATGTTTGAACTCTTGTATCAT 1540
|||||||||||||||||||||||||||
Sbjct 1488 ATCATGATGTTTGAACTCTTGTATCAT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60334948080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5