BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30090.1 Length=1610 Score E Sequences producing significant alignments: (Bits) Value Ahg473227 jgi|Araly1|473227|fgenesh2_kg.1__3181__AT1G30090.1 2302 0.0 > Ahg473227 jgi|Araly1|473227|fgenesh2_kg.1__3181__AT1G30090.1 Length=1514 Score = 2302 bits (1246), Expect = 0.0 Identities = 1436/1527 (94%), Gaps = 16/1527 (1%) Strand=Plus/Plus Query 17 aaaaaaaaTGAGGAAGAGCTGAAAGATTCGCGACGAAGCAAAACGACAGTG-TTATCTAT 75 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1 AAAAAAAATGAGGAAGAGCTGAAAGATTCGCGACGAAGCAAAACAACAGTGTTTATCTAT 60 Query 76 CGCCGCCTTGTTGTTCTGTTTAACAAGTGTAGAGGAACCAAAGTTGAAAACTTTGAACTT 135 |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| | | Sbjct 61 CGCCGCCTTGTTGTTCTGTTAAACAAGAGTAGAGGAACCAAAGTTGGAAACTTTGATC-T 119 Query 136 CCCATTGATTTTAATGTTAATTACTGATCATTCGAATCTGAAATTGAAG-CATATGAGTG 194 ||| | | |||||||||||||||| ||||||||| ||| |||| | |||| || Sbjct 120 CCC----A---T--TGTTAATTACTGATCACTCGAATCTGGAATAGAAGTAAAATGAATG 170 Query 195 CTTAATCTGTGAGTGTTAGAAGAAGTAGAAGAAGATGCAGAGGGTTAGGGTTTCATCTCA 254 |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 171 CTTAATCTCTGAGTGTTAAAAGAAGAAGAAGAAGATGCAGAGGGTTAGGGTTTCATCTCA 230 Query 255 AAGAGCAGTTGTGCATAAGCTTGGTGATTCTCAGATGACATTATCTCCCAAATTTAGAGT 314 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 231 AAGAGCAGCTGTGCATAAGCTTGGTGATTCTCAGATGACTTTATCTCCCAAATTTAGAGT 290 Query 315 AGCTGCATCGATACAATCGACATTGTTCGATAGATCATCGGAATTAGAACTGTCTCTTAG 374 |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 291 AGCTGCATCGATTCAATCGACATTGTTTGATAGATCATCGGAATTAGAACTGTCTCTTAT 350 Query 375 AGGAGAGCCCTTGATTCCCGGTTTACCAGACGATGTTGCGCTTAACTGTCTTTTACGGGT 434 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 351 AGGAGAACCCTTGATTCCCGGTTTACCTGACGATGTTGCGCTTAACTGTCTTTTACGGGT 410 Query 435 TCCAGTTCAAAGCCATGTATCGAGTAAATCCGTGTGCAAGAGATGGCATCTTTTGTTTGG 494 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 411 TCCAGTTCAAAGCCATGTATCGAGTAGATCCGTGTGCAAGAGATGGCATCTCTTGTTTGG 470 Query 495 TACTAAAGAGACGTTTTTCGCTAAGCGTAAGGAGTTCGGGTTTAAAGACCCGTGGCTGTT 554 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 471 TACTAAAGAGACGTTTTTCGCTAAGCGTAAGGAGTTCGGGTTTAAAGACCCGTGGTTGTT 530 Query 555 CGTTGTCGGGTTTAGTAGATGCACTGGGAAGATCCAGTGGAAGGTTTTGGATTTGAGGAA 614 ||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 531 CGTGGTTGGGTTTAGTAGATGCACTGGGAAAATCCAATGGAAGGTTTTGGATTTGAGGAA 590 Query 615 TCTCACTTGGCATGAAATCCCTGCTATGCCTTGCAGAGATAAAGTTTGTCCTCACGGTTT 674 |||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| Sbjct 591 TCTCACTTGGCACGAAATCCCGGCTATGCCTTGTAGAGACAAAGTTTGTCCTCACGGTTT 650 Query 675 TAGATCGGTTTCGATGCCTCGCGAAGGTACTATGTTTGTATGTGGTGGAATGGTTTCGGA 734 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 651 CAGATCGGTTTCGATGCCTCGGGAAGGTACTATGTTTGTATGTGGCGGAATGGTTTCGGA 710 Query 735 TTCTGATTGTCCTCTTGATTTGGTGTTGAAGTATGATATGGTGAAGAATCATTGGACTGT 794 ||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 711 TTCGGATTGCCCTCTTGATTTGGTGTTGAAGTACGATATGGTGAGGAATCATTGGACTGT 770 Query 795 CACTAACAAGATGATAACCGCGAGGTCGTTTTTCGCTAGCGGTGTGATCGATGGGATGAT 854 ||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 771 CACGAAAAAAATGATAACCGCGAGGTCGTTTTTTGCTAGCGGTGTGATCGATGGGATGAT 830 Query 855 ATACGCGGCAGGTGGAAATGCTGCGGATTTATATGAGCTTGATTGTGCCGAGGTTTTGAA 914 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 831 ATACGCGGCAGGTGGAAATGCTGCGGATTTATATGAGCTTGATTCTGCCGAGGTTTTGAA 890 Query 915 CCCTTTGGATGGGAATTGGCGGCCAGTTTCGAACATGGTAGCTCATATGGCGTCTTACGA 974 |||||||||||||||||||||||||||||| || ||||| || || |||||||||||||| Sbjct 891 CCCTTTGGATGGGAATTGGCGGCCAGTTTCAAATATGGTCGCACACATGGCGTCTTACGA 950 Query 975 CACAGCGGTTTTAAACGGGAAGCTTTTGGTAACGGAAGGATGGTTATGGCCGTTCTTTGT 1034 |||||| || |||||||||||||| ||||| || ||||||||| |||||||||||||||| Sbjct 951 CACAGCAGTCTTAAACGGGAAGCTCTTGGTGACAGAAGGATGGCTATGGCCGTTCTTTGT 1010 Query 1035 ATCCCCGAGAGGTCAAGTTTATGACCCGAGGACGGATCAATGGGAAACAATGTCAATGGG 1094 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 ATCCCCAAGAGGTCAAGTTTATGACCCGAGGACGGATCAATGGGAAACAATGTCAATGGG 1070 Query 1095 GCTAAGAGAAGGATGGACCGGGACGAGTGTCGTGATTTATGATCGGTTGTTTATAGTTTC 1154 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1071 GTTAAGAGAAGGATGGACCGGGACAAGTGTCGTGATTTATGATCGGTTGTTTATAGTTTC 1130 Query 1155 GGAGTTAGAGAGAATGAAGATGAAGGTTTATGATCCGGTTACAGATTCGTGGGAGACGAT 1214 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1131 GGAATTAGAGAGAATGAAGATGAAGGTTTATGATCCGGTTACGGATTCGTGGGAGACGAT 1190 Query 1215 TAACGGACCGGAATTGCCTGAGCAGATTTGTAGACCGTTTGCGGTTAACTGTTATGGGAA 1274 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1191 TAACGGACCGGAATTGCCTGAGCAGATTTGTAGACCGTTTGCGGTTAACTGTTACGGGAA 1250 Query 1275 CAGAGTATATGTGGTTGGTAGGAATCTTCATCTCGCGGTTGGGAATATTTGGCAGTCGGA 1334 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 CAGAGTATTTGTGGTTGGTAGGAATCTTCATCTCGCGGTTGGGAATATTTGGCAGTCGGA 1310 Query 1335 GAATAAGTTTGCTGTGAGGTGGGAGGTTGTTGAGTCGCCGGAGCGTTATGCAGATATAAC 1394 ||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||| Sbjct 1311 GAATAAGTTTGGTGTGAGGTGGGAGGTCGTTGAGTCGCCGGAGCGTTATGCTGGTATAAC 1370 Query 1395 TCCATCGAATTCTCAGATTCTTTTTGCTTAAAAGAGATTTGATCAGTCTGTTTGGTATGG 1454 ||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||| Sbjct 1371 TCCATCGAATTCTCAGATTCTTTTTGCTTAAAAGAGATTTGATAAATCTGTTTACTTTGG 1430 Query 1455 -TTTCCAAATGTCTGTGAACCATATTGTATGAATAAGTAAAAACTTGTCTTAGTAACATC 1513 |||| || ||| |||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 1431 ATTTC-AATTGTTTGTGAACCATATTGTATGAATAAGTAAA--CTTGTCTTGGAAACATC 1487 Query 1514 ATCATGATGTTTGAACTCTTGTATCAT 1540 ||||||||||||||||||||||||||| Sbjct 1488 ATCATGATGTTTGAACTCTTGTATCAT 1514 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60334948080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5