BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30100.1
Length=2026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473228 jgi|Araly1|473228|fgenesh2_kg.1__3182__AT1G30100.1 2856 0.0
Ahg478868 jgi|Araly1|478868|fgenesh2_kg.3__1569__AT3G14440.1 387 2e-106
> Ahg473228 jgi|Araly1|473228|fgenesh2_kg.1__3182__AT1G30100.1
Length=1945
Score = 2856 bits (1546), Expect = 0.0
Identities = 1735/1827 (95%), Gaps = 9/1827 (0%)
Strand=Plus/Plus
Query 38 GCTCTCATGGCTTGTTCTTACATATTAACACCAAACCCAACCAAACTCAATCTCTCCTTT 97
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCTCATGGCTTGTTCTTACGTATTAACACCAAACCCAACCAAACTCAATCTCTCCTTT 60
Query 98 GCACCCTCCGATCTCGACGCTCCTTCGCCGTCATCCTCCGTTAGTTTCACCAACACTAAA 157
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GCTCCCTCCGATCTCGACGCTCCTTCGCCTTCATCCTCCGTTAGTTTCACCAACACTAAA 120
Query 158 CCAAGACGCCGTAAACTCTCTGCAAACTCCGTCTCCGACACACCAAATCTACTGAATTTC 217
| |||||| ||||||||||| ||||||||||||||||||| |||| | ||||||||| |
Sbjct 121 CAAAGACGTCGTAAACTCTCCACAAACTCCGTCTCCGACACTCCAACTTTACTGAATTCC 180
Query 218 CCAAACTACCCTTCTCCAAACCCCATAATTCCCGAAAAAGACACTTCCCGTTGGAACCCT 277
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 181 CCAAACTACCCTTCTCCAAACCCCATGATTCCCGAAAAGGACAGTTCCCGTTGGAACCCT 240
Query 278 CTCCAACGCGCCGCCTCCGCCGCACTCGACTTCGCCGAAACCGCATTGTTAAGACGCGAA 337
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 CTCCAACGCGCCGCCTCCGCCGCACTCGACTTCGCCGAAACCGCATTGGTAAGACGCGAA 300
Query 338 CGTTCTAAACCTCTCCCTAAAACAGTTGATCCTCGCCATCAGATCTCCGGTAACTACGCT 397
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 301 CGTTCTAAACCTCTCCCTAAAACCGTTGATCCTCGCCATCAGATCTCCGGCAACTACGCT 360
Query 398 CCGGTACCGGAGCAATCCGTTAAATCATCTCTCTCCGTTGATGGAAAAATCCCTGACTGC 457
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 CCGGTGCCGGAACAATCCGTTAAATCATCTCTCTCCGTTGACGGAAAAATCCCTGAATGC 420
Query 458 ATTGACGGTGTTTACCTCCGTAACGGCGCTAATCCACTCTTCGAGCCAGTTTCTGGTCAT 517
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 421 ATTGACGGTGTTTATCTCCGTAACGGTGCTAATCCACTCTTTGAGCCAGTTTCTGGTCAT 480
Query 518 CACCTATTCGACGGTGACGGTATGGTTCACGCCGTTAAAATCACTAACGGAGACGCGAGT 577
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CACCTATTCGACGGTGACGGTATGGTTCACGCCGTTAAAATCACTAACGGTGACGCGAGT 540
Query 578 TACTCGTGCCGGTTTACGGAAACCGAGAGATTGGTTCAAGAGAAACAACTCGGTTCTCCG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACTCGTGCCGGTTTACGGAAACCGAGAGATTGGTTCAAGAGAAACAACTCGGTTCTCCG 600
Query 638 ATTTTCCCTAAAGCTATAGGTGAGCTACATGGTCACTCTGGAATCGCACGGTTGATGCTA 697
||||| |||||||| || ||||||||||| |||||||| || ||||||||||||||||||
Sbjct 601 ATTTTTCCTAAAGCCATTGGTGAGCTACACGGTCACTCCGGCATCGCACGGTTGATGCTA 660
Query 698 TTTTACGCACGTGGTTTATTCGGTTTATTAAATCACAAAAACGGAACCGGAGTTGCTAAC 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTTACGCACGTGGTTTATTCGGTTTATTAAATCACAAAAACGGAACCGGAGTTGCTAAC 720
Query 758 GCCGGTTTGGTTTACTTCCACGACCGGTTATTAGCTATGTCTGAAGATGATCTACCTTAC 817
|||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 721 GCCGGTTTGGTTTATTTTCACGACCGGTTATTAGCTATGTCTGAAGACGATTTACCTTAC 780
Query 818 CAAGTTCGTGTCACTGACAATGGCGATTTAGAGACCATCGGAAGATTCGATTTCGACGGA 877
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 CAAGTTCGTGTCACCGACAATGGCGATTTAGAGACGATCGGAAGATTCGATTTCGACGGA 840
Query 878 CAACTAAGCTCCGCCATGATCGCTCACCCGAAGATTGATCCGGTA-ACGAAGGAGCTATT 936
||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 841 CAATTAAGCTCCGCCATGATCGCTCACCCGAAGATTGATCCAG-AGACGAAGGAGCTATT 899
Query 937 TGCGTTGAGCTACGACGTCGTTAAGAAACCGTATTTGAAATACTTTAAATTCTCGCCGGA 996
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 900 CGCGTTGAGCTACGACGTCGTTAAGAAACCGTATTTGAAATACTTCAGATTCTCGCCGGA 959
Query 997 AGGTGAGAAATCACCGGACGTTGAGATTCCTCTCGCCAGTCCGACGATGATGCACGATTT 1056
|||||||||||| || ||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 960 AGGTGAGAAATCGCCAGACGTGGAGATTCCTCTTGCGAGTCCAACGATGATGCACGATTT 1019
Query 1057 CGCGATCACTGAGAATTTCGTTGTGATTCCGGATCAACAAGTTGTGTTTAAGCTCTCCGA 1116
||||||||||||||| ||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 1020 CGCGATCACTGAGAAATTCGTCGTGATTCCGGATCAACAAGTGGTATTTAAACTCTCCGA 1079
Query 1117 TATGTTTCTTGGGAAATCTCCGGTTAAATACGACGGAGAGAAAATTTCCCGGTTTGGAAT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 TATGTTTCTTGGGAAATCTCCGGTTAAATACGACGGAGAGAAAATTTCCCGATTTGGAAT 1139
Query 1177 TTTGCCTAGAAACGCTAAAGATGCGTCGGAGATGGTTTGGGTTGAGTCACCGGAGACTTT 1236
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 1140 TTTGCCCAGAAACGCTAAAGATGCGTCGGAGATGGTTTGGGTCGAGTCGCCGGAAACGTT 1199
Query 1237 TTGTTTCCATCTTTGGAACGCTTGGGAGTCACCGGAGA-CAGACGAGGTTGTAGTGATCG 1295
|||||||||||||||||||||||||| || ||||||| || | |||||||| ||||| |
Sbjct 1200 CTGTTTCCATCTTTGGAACGCTTGGGAATCGCCGGAGACCA-ATGAGGTTGTGGTGATTG 1258
Query 1296 GATCTTGCATGACTCCGGCGGATTCGATCTTCAACGAGTGCGATGAGCAGCTCAACAGTG 1355
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1259 GATCTTGCATGACTCCGGCGGATTCGATCTTCAACGAGTGCGATGAGCAACTCAACAGTG 1318
Query 1356 TTTTATCAGAGATCCGGTTAAATCTCAAAACCGGGAAATCCACACGCAGAACTATAATTC 1415
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 TTTTATCGGAGATCCGGTTAAATCTCAAAACCGGAAAATCCACACGCAGAACTATAATTC 1378
Query 1416 CCGGTTCGGTTCAGATGAATCTTGAAGCTGGTATGGTAAACCGAAATCTTCTCGGGAGGA 1475
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1379 CCGGTTCGGTTCAGATGAATCTTGAAGCTGGTATGGTAAACCGGAATCTTCTTGGGAGGA 1438
Query 1476 AAACCCGGTACGCATACCTAGCCATAGCTGAACCGTGGCCTAAAGTCTCAGGATTCGCTA 1535
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1439 AAACCCGGTACGCGTACCTAGCGATAGCTGAACCGTGGCCTAAAGTCTCAGGATTTGCAA 1498
Query 1536 AAGTTGATCTTTCTACCGGAGAAGTGAAAAATCACTTTTACGGCGGTAAAAAATACGGTG 1595
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1499 AAGTGGACCTTTCTACCGGAGAAGTGAAAAATCATTTTTACGGCGGTAAAAAATACGGTG 1558
Query 1596 GTGAACCTTTTTTCTTACCTAGAGGGTTAGAATCTGACGGAGAAGATGACGGTTACATTA 1655
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GTGAACCTTTTTTCTTACCGAGAGGGTTAGAATCTGACGGAGAAGATGACGGTTACATTA 1618
Query 1656 TGTCGTTTGTTCACGACGAGGAGAGTTGGGAATCGGAGCTTCATATTGTTAACGCCGTTA 1715
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGTCGTTTGTTCATGATGAGGAGAGTTGGGAATCGGAGCTTCATATTGTTAACGCCGTTA 1678
Query 1716 CGTTGGAACTAGAAGCAACCGTTAAATTGCCGTCAAGAGTACCGTATGGTTTCCACGGCA 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CGTTGGAACTAGAAGCAACCGTTAAATTGCCGTCAAGAGTACCGTATGGTTTCCACGGCA 1738
Query 1776 CTTTCGTGAATTCGGCGGATATGTTAAACCAGGCTTA--AA-CCAAAACCGGTTGC-GGT 1831
||||||||||||||||||||||||||||||||||||| || || || |||||| | |||
Sbjct 1739 CTTTCGTGAATTCGGCGGATATGTTAAACCAGGCTTAGTAAACCGAATCCGGTT-CAGGT 1797
Query 1832 TTGGTTTATTGTGCAGAGCCAGatttt 1858
|||||||||||||||||| ||||||||
Sbjct 1798 TTGGTTTATTGTGCAGAGGCAGATTTT 1824
Score = 165 bits (89), Expect = 1e-39
Identities = 115/127 (91%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 1889 atttttgtgaaaac-aaatagat-ttttttttttCGAAGCGGTGGGAGCCAGCTTGAAGC 1946
||||||||||| || |||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct 1820 ATTTTTGTGAATACAAAATAG-TCTTTGTTTTCCCGAAGCGGTGGGAGCCAGCTTGAAGC 1878
Query 1947 TTGTGTAAGTAGAAGTTTTGCTA-GCTCAGCTGGTCTCTGTTGCAtttttttCTGGTTTA 2005
||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| ||
Sbjct 1879 TTGTGTAAGTAGAAGTTTTGCTAAGCTCAGCTGGTTTCTGTTGCATTTTTTTGTGGTGTA 1938
Query 2006 TAAATAA 2012
| |||||
Sbjct 1939 TTAATAA 1945
> Ahg478868 jgi|Araly1|478868|fgenesh2_kg.3__1569__AT3G14440.1
Length=2290
Score = 387 bits (209), Expect = 2e-106
Identities = 1021/1402 (73%), Gaps = 99/1402 (7%)
Strand=Plus/Plus
Query 427 TCTCTCCGTTGAT-GGAAAAATCCCTGACTGCATTGACGGTGTTTACCTCCGTAACGGCG 485
||| |||| || | |||||||| ||||| | ||| | || || || | || ||||| |
Sbjct 534 TCT-TCCGGTGGTCGGAAAAATACCTGATTCCATCAAAGGAGTGTATGTGCGCAACGGAG 592
Query 486 CTAATCCAC-TCTTCGAGCCAGTTTCTGGTCATCACCTATTCGACGGTGACGGTATGGTT 544
|||| |||| || |||||| || | || || ||| | |||||||| ||||||||||||
Sbjct 593 CTAACCCACTTC-ACGAGCCGGTGACAGGACACCACTTCTTCGACGGAGACGGTATGGTT 651
Query 545 CACGCCGTTAAAATCACTA-ACGGAGAC-GCGAGTTACTCGTGCCGGTTTACGGAAACCG 602
|||||||| ||| || | |||| | || || ||| | ||||||||||| | ||
Sbjct 652 CACGCCGTCAAATTC-GAAGACGG-TTCAGCTAGCTACGCTTGCCGGTTTACTCAGACTA 709
Query 603 AGAGATTGGTTCAAGAGAAACAACTCGGTTC-TCCGATTTTCCCTAAAGCTATAGGTGAG 661
| | || ||||| ||| || | || || ||| ||||||| |||||||| ||||||
Sbjct 710 ACCGGTTTGTTCAGGAGCGTGAA-TTGGGTCGACCGGTTTTCCCCAAAGCTATCGGTGAG 768
Query 662 CTACATGGTCACTCTGGAATCGCACGGTTGATGCTATTTTACG-CACGTGGTTTATTCGG 720
|| || || ||| | || || || || | |||||||| |||| || | | | | |||
Sbjct 769 CTTCACGGCCACACCGGTATTGCCCGACTCATGCTATTCTACGCCA-GAGCTGCAGCCGG 827
Query 721 TTTATTAAATCAC-AAAAACGGAACCGGAGTTGCTAACGCCGGTTTGGTTTACTTCCACG 779
| || | | | | | |||||||||| || || |||||||||||||| || ||| |||
Sbjct 828 TATAGTCGA-CCCGGCACACGGAACCGGTGTAGCCAACGCCGGTTTGGTCTATTTCAACG 886
Query 780 ACCGGTTATTAGCTATGTCTGAAGATGATCTACCTTACCAAGTTCGTG-TCACTGACAAT 838
||||||||| || ||||| || || ||| | |||||||||||||| | ||||| || |
Sbjct 887 GCCGGTTATTGGCGATGTCGGAGGACGATTTGCCTTACCAAGTTCG-GATCACTCCCAGT 945
Query 839 GGCGATTTAGAGACCATCGGAAGATTCGATTTCGACGGACAACTAAG-CTCCGCCATGAT 897
|| |||||| | ||| | || | |||||||| ||||||||| | | ||| | |||||
Sbjct 946 GGAGATTTAAAAACCGTTGGTCGGTTCGATTTTGACGGACAA-TTGGATTCCACAATGAT 1004
Query 898 CGCTCACCCG-AAGATTGATCCGGTAA--CGAAG-GAGCTATTTGCGTTGAGCTACGACG 953
|| |||||| ||| | || |||| || || | || || || || || || |||||||
Sbjct 1005 TGCCCACCCGAAAG-TCGACCCGG-AATCCG--GTGAACTCTTCGCTTTAAGTTACGACG 1060
Query 954 TCG-TTAAGAAACCGTATTTGAAATACTTTAAATTCTCGCCGGAAGGTGA-GAAATCACC 1011
||| || | || || || |||||||||| |||||||||||| || | ||||||||
Sbjct 1061 TCGTTTCA-AAGCCTTACCTGAAATACTTCCGATTCTCGCCGGACGG-AACTAAATCACC 1118
Query 1012 GGACGTTGAGATTCCTCTCG-CCAGTCCGACGATGATGCACGATTTCGCGATCACTGAGA 1070
|||||| ||||||| || | ||| ||||| |||||||||||||||||||| || ||||
Sbjct 1119 GGACGTCGAGATTCAGCTTGATCAG-CCGACAATGATGCACGATTTCGCGATTACAGAGA 1177
Query 1071 ATTTCGTTGTGATTCCGGATCAACAAGTTGTGTTT-AAGCTCT-CC-GATATGTTTCTTG 1127
| ||||| ||||| ||||| || ||||| || ||| ||| | | || || ||| | | |
Sbjct 1178 ACTTCGTCGTGATACCGGACCAGCAAGTCGT-TTTCAAG-T-TGCCGGAGATGATCCGCG 1234
Query 1128 G-GAAATCTCCGGTTAAATACGACGGAGAGAA-AA--TTTCCCGGTTTGGAATTTT-GCC 1182
| | |||||||| |||||| | |||| || | || | || |||||||| | |
Sbjct 1235 GTG-GCTCTCCGGTGGTTTACGAC--A-AGAACAAGGTCTCAAGATTCGGAATTTTAGAC 1290
Query 1183 TAGAA-ACGCTAAAGATGCGTCGGAGATGGTTTGGGTTGAGT-CACCGGAGACT--TTTT 1238
| || |||| ||||| | ||| | || ||| |||| | | || |||| || |
Sbjct 1291 -A-AATACGCCGAAGATTCATCGAATATTAAGTGGATTGA-TGCGCC--TGACTGCTTCT 1345
Query 1239 GTTTCCATCTTTGGAACGCTTGGG-AGTCA-CCGGAGACAGACGAGGTTGTAGTGATCGG 1296
| |||||||| ||||||||||||| || | || || ||||| || || || ||||||||
Sbjct 1346 GCTTCCATCTCTGGAACGCTTGGGAAG--AGCCAGAAACAGAGGAAGTCGTCGTGATCGG 1403
Query 1297 ATCTTGCATGACTCCGGCGGATTCGATCTTCAACGAGTGC-GATGAGCAGCTCAACAGTG 1355
|| || |||||||| | || || || |||||||||| | || ||| | ||||| ||||
Sbjct 1404 GTCGTGTATGACTCCACCAGACTCAATTTTCAACGAGT-CTGACGAGAATCTCAAGAGTG 1462
Query 1356 TTTTATCAGAGATCCGGTTAAATCTCAAAACCGG-GAAATCCACACGCAGAACTATAATT 1414
| | || || ||||| | |||||||||||||| | |||| || ||| | | || | |
Sbjct 1463 TCCTCTCTGAAATCCGCCTGAATCTCAAAACCGGTG-AATCAACTCGCCGTCCGATCA-T 1520
Query 1415 C-CCGGTTCG--GTTC-A-GA-TGAATCTTGAAGCTGGTATGGTAAACCGAAATC-TTCT 1467
| || | || | || | | | || || ||||| || ||||| ||| |||| | | ||
Sbjct 1521 CGCC-G-ACGAAGATCAACAAGTCAACCTCGAAGCAGGGATGGTCAACAGAAA-CATGCT 1577
Query 1468 CGGGAGGAAAACCCGGTACGCATACCTAGCCATAGCTGAACCGTGGCCTAAAGTCTCAGG 1527
||| ||||||| | ||| ||| | || |||| || || |||||||||||||||||
Sbjct 1578 CGGCCGGAAAACAAAATTCGCTTACTTGGCTTTAGCCGAGCCATGGCCTAAAGTCTCAGG 1637
Query 1528 ATTCGCTAAAGTTGATCTTTCTACCGGAGAAGTGAA-AAATCA-CTTTTACGGCGGTAAA 1585
|||||||||||||||||| ||||||||||||| || ||| || || | |||||| |||
Sbjct 1638 ATTCGCTAAAGTTGATCTCACTACCGGAGAAGTCAAGAAA-CATCTCT-ACGGCGATAAC 1695
Query 1586 AAATACGGTGGTGAACCTTT-TTTCTTACCT-AGAGGGTTAGAATCTGACGGAGAAGATG 1643
||||| || || ||| | ||||| || ||| || || | || |||||| |
Sbjct 1696 CGTTACGGAGGAGAGCCTCTGTTTCTCCCCGGAGAAGG--AGGA---GA---AGAAGACG 1747
Query 1644 ACGGTTACATTATGTCGTTT-GTTCACGACGAGGAGAGTTGGGAATCGGAGCTT-CATAT 1701
| || |||| | | |||| ||||||||||| ||| ||| |||||||| || || ||
Sbjct 1748 AAGGACACATCCTCT-GTTTCGTTCACGACGAAAAGACATGGAAATCGGAG-TTACAGAT 1805
Query 1702 TGTTAACGCCGTTA-CGTTGGAACTAGAAGCAACCGTTAAA-TTGCCGTCAAGAGTACCG 1759
||||||||||||| | ||||| | |||||||| |||||| || |||||||| || |||
Sbjct 1806 AGTTAACGCCGTTAGC-TTGGAGGTTGAAGCAACGGTTAAACTT-CCGTCAAGGGTTCCG 1863
Query 1760 TATGG-TTTCCACGGCACTTTC 1780
|| || |||| |||| || |||
Sbjct 1864 TACGGATTTC-ACGGTACATTC 1884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76180490000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5