BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30110.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473229 jgi|Araly1|473229|fgenesh2_kg.1__3183__AT1G30110.1 1380 0.0
> Ahg473229 jgi|Araly1|473229|fgenesh2_kg.1__3183__AT1G30110.1
Length=905
Score = 1380 bits (747), Expect = 0.0
Identities = 860/913 (94%), Gaps = 13/913 (1%)
Strand=Plus/Plus
Query 1 CGTGTGCTTTGTGTTTGAAAGAAAacacacacacacacacaTGTTCTTCGTTGCTGCTTC 60
||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||
Sbjct 1 CGTGTGCTTTGTGTTTGAAAG--AA-A-A-ACACACACACATGTTCTTCGTTGCTGCTTC 55
Query 61 GTTGGGTTAAAAAC--TTTTCTTTTGTTTCTTGCTTTTTGCAAAGTCAAAGATAACAAAT 118
|||||||||||||| |||| |||| |||||||| |||||| ||||||||||||| ||||
Sbjct 56 GTTGGGTTAAAAACTTTTTTTTTTTTTTTCTTGC-TTTTGCGAAGTCAAAGATAAAAAAT 114
Query 119 AAATAAGAAAAATGGAGAATCTACCACCTGGTTATCGTCCCAATGTTGGTGTTTGTCTAA 178
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 115 AAATAAGTAAAATGGAGAATCTACCTCCTGGTTATCGTCCCAATGTTGGTGTTTGTCTAA 174
Query 179 TCAACTCGGATAATCTGGTATTTGTAGCTTCTAGATTGAATGTTCCAGGAGCATGGCAGA 238
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 175 TCAACTCGGATAATCTGGTATTTGTAGCTTCTAGATTGAATGTTCCTGGAGCATGGCAGA 234
Query 239 TGCCACAGGGAGGCATTGAAGATGGGGAGGATCCAAAGTCAGCAGCCATGAGAGAGTTAC 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGCCTCAGGGAGGCATTGAAGATGGGGAGGATCCAAAGTCAGCAGCCATGAGAGAGTTAC 294
Query 299 AAGAAGAAACTGGTGTTGTTTCAGCTGAAATCGTCTCTGAGGTCCCAAATTGGTTGACAT 358
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 295 AAGAAGAAACTGGTGTCGTTTCAGCTGAAATAGTCTCTGAGGTTCCAAATTGGTTGACAT 354
Query 359 ATGATTTTCCACCAGCAGTAAAAGCAAAAGTTAACCGTCTTTGGGGCGGTGAATGGCATG 418
|||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 355 ATGACTTCCCACCTGCAGTAAAAGCAAAGGTTAACCGTCTTTGGGGCGGTGAATGGCATG 414
Query 419 GTCAAGCTCAGAAATGGTATTTAGTGAGACTGAGGAACGATGAGGACGAGAAAGAGATCA 478
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 415 GTCAAGCTCAGAAATGGTTTTTAGTGAGACTGAGAAACGATGAGGACGAAAAAGAGATCA 474
Query 479 ATCTAGCGAACAACGAAGCGGATTCAGAGTTTGCGGAGTGGAAATGGGCGAAGCCAGAAG 538
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 475 ATCTAGCGAACAACGAAGCGGATTCAGAGTTTGCAGAGTGGAAATGGGCGAAACCAGAAG 534
Query 539 AAGTGGTAGAGCAAGCAGTGGATTACAAAAGGCCAACCTATGAAGAAGTCATCAAGACTT 598
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAGTGATAGAGCAAGCAGTGGATTACAAAAGGCCAACCTATGAAGAAGTCATCAAGACTT 594
Query 599 TTGGTTCGTTCTTAAACGACACAGGAAGAGCTGCTAAATGTAAATCAGCCAAGTGGTGAT 658
||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTGGTTCCATCTTGAACGATATAGGAAGAGCTGCTAAATGTAAATCAGCCAAGTGGTGAT 654
Query 659 ATAAGATACCAAGAACCAAtgtttgtctttttatt-ttttttgttaactgttgtttttct 717
|||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 655 ATAAGAAACCAAGAATCAATGTTTGTCTTTTTATTATTTTTTGTTAACTGTTGTTTATCT 714
Query 718 ttttttgggcggttctttttAGTAGAACCCTTTTGGAATGCAAAA-GCTTTCTCTAGGGg 776
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 715 TTTTTTGGGGGGTTCTTTTTAGTAGAACCCTTTTGGAATGCAAAAAGCTTTCTCTAGGTG 774
Query 777 ttttttacttt-catttttgtaaattggttattggtacgtagaaagtttttttgttttat 835
||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 775 TTTATTACTTTTCATTTTTGTAAATTGGTTATTGGTAC-TAGAAGGTTTTTTGGTTTTAT 833
Query 836 tttaACATGGGGGTCATTGTAATAAAGTCGTTGTCTGGATTCAGAAGGAAATGAGTTGTG 895
|||||| ||| | | ||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 834 TTTAACGTGGAGTT-ATTGTAATAAAGTCGTTGTTTGGATTCAGAAAGAAAAGAGTTGTG 892
Query 896 TATGTGTTTATAA 908
|||||||||||||
Sbjct 893 TATGTGTTTATAA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5