BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30120.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473230 jgi|Araly1|473230|fgenesh2_kg.1__3184__AT1G30120.1 2283 0.0
Ahg482422 jgi|Araly1|482422|fgenesh2_kg.4__1482__AT2G34590.1 1123 0.0
> Ahg473230 jgi|Araly1|473230|fgenesh2_kg.1__3184__AT1G30120.1
Length=1490
Score = 2283 bits (1236), Expect = 0.0
Identities = 1370/1434 (96%), Gaps = 12/1434 (1%)
Strand=Plus/Plus
Query 129 AAATTGTCCCGAGCTTTGAGCATATAAAAAATGTCTTCGATAATCCATGGAGCTGGAGCT 188
||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 65 AAATTGTCCCGAGCTCTGTGC-----AAAAATGTCTTCGATAATCCATGGAGCTGGAGCT 119
Query 189 GCTACGACGACGTTATCGACGTTTAATTCCGTCGATTCCAAGAAACTCTTCGTTGCTCCT 248
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 120 GCTACGACGACGTTATCGACGTTTAATTCCGTCGATTCCAAGATACTC---GTAGCTCCT 176
Query 249 TCTCGCACAAATCTTTCAGTGAGGAGCCAGAGATATATAGTGGCTGGATCTGATGCGAGT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCTCGCACAAATCTTTCAGTGAGGAGCCAGAGATATATAGTGGCTGGATCTGATGCGAGT 236
Query 309 AAGAAGA-G--CTTTGGTTCTGGACTTAGAGTTCGTCACTCTCAGAAATTGATTCCAAAT 365
|||| || | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 237 AAGAGGAAGAACTTTGGTTCTGGACTCAGAGTTCGTCACTCTCAGAAATTGATTCCAAAT 296
Query 366 GCTGTTGCGACGAAGGAGGCGGATACGTCTGCGAGCACTGGACATGAACTATTGCTTTTC 425
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 297 GCTGTTGCGACGAAGGAGGCGGACACATCTGCGAGCACTGGACATGAACTATTGCTTTTC 356
Query 426 GAGGCTCTTCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATG 485
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 357 GAGGCTCTTCAGGAAGGTCTGGAAGAAGAAATGGACAGAGATCCACATGTCTGTGTTATG 416
Query 486 GGTGAAGATGTTGGCCATTACGGAGGTTCCTACAAGGTAACCAAAGGCCTTGCTGATAAA 545
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 417 GGTGAAGATGTTGGCCATTACGGAGGCTCTTACAAGGTAACCAAAGGTCTTGCTGATAAA 476
Query 546 TTTGGTGACCTCAGGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGC 605
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTCGGCGACCTCAGGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGC 536
Query 606 ATTGGAGCTGCCATGACTGGTCTAAGACCCGTTATTGAAGGTATGAACATGGGTTTCCTC 665
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 ATTGGAGCCGCCATGACTGGTCTAAGACCCGTCATTGAAGGTATGAACATGGGTTTCCTC 596
Query 666 CTCCTCGCCTTCAACCAAATCTCCAACAACTGTGGAATGCTTCACTACACATCCGGTGGT 725
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 597 CTCCTCGCCTTCAACCAAATCTCTAACAACTGTGGAATGCTTCACTACACATCTGGTGGT 656
Query 726 CAGTTTACGATCCCGGTTGTCATCCGTGGACCTGGTGGAGTGGGACGCCAGCTTGGTGCT 785
||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 657 CAGTTCACGATCCCAGTTGTCATCCGTGGGCCTGGTGGAGTGGGACGTCAGCTTGGCGCT 716
Query 786 GAGCATTCACAGAGGTTAGAATCTTACTTTCAGTCCATCCCTGGGATCCAGATGGTTGCT 845
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 GAGCATTCACAGCGGTTAGAATCTTACTTCCAGTCCATCCCTGGGATCCAGATGGTTGCT 776
Query 846 TGCTCAACTCCTTACAACGCCAAAGGGTTGATGAAAGCCGCAATAAGAAGCGAGAACCCT 905
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 777 TGCTCTACTCCTTACAACGCCAAAGGCTTGATGAAAGCCGCGATAAGAAGCGAGAACCCC 836
Query 906 GTGATTCTGTTCGAACACGTGCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGAT 965
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGATTCTGTTCGAACACGTTCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGAT 896
Query 966 TACGTCTGTAACCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTC 1025
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TACATCTGTAACCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTC 956
Query 1026 ACTTACTCGCGAATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGG 1085
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACTTACTCGCGGATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGG 1016
Query 1086 TATGACCCCGAGGTTATCGACATCAGGTCACTGAAACCGTTCGACCTTCACACAATTGGA 1145
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1017 TATGACCCTGAGGTTATCGACATCAGGTCACTGAAACCCTTCGACCTTCACACAATCGGA 1076
Query 1146 AACTCGGTGAAGAAAACACATCGGGTTTTGATCGTGGAGGAGTGTATGAGAACCGGTGGG 1205
||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1077 AACTCAGTAAAGAAAACACACCGGGTTTTGATCGTGGAGGAGTGTATGAGAACTGGTGGG 1136
Query 1206 ATTGGGGCAAGTCTTACAGCTGCCATCAACGAGAACTTTCATGACTACTTAGATGCTCCG 1265
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1137 ATTGGGGCAAGTCTTACAGCTGCCATCAACGAGAACTTCCATGACTACTTAGATTCTCCG 1196
Query 1266 GTGATGTGTTTATCTTCTCAAGACGTTCCTACACCTTACGCTGGTACACTGGAGGAGTGG 1325
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1197 GTGATGTGCTTATCTTCTCAAGACGTTCCTACACCATACGCTGGTACACTGGAGGAGTGG 1256
Query 1326 ACCGTGGTTCAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAAATTCAT 1385
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ACAGTGGTTCAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAAATTCAT 1316
Query 1386 ATTTATCCGATGAACCATTATTTATCATTTACCTCTCCATTTCCTTTCTCTGTAGCTTAG 1445
|||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||
Sbjct 1317 ATTTATCCGATGAACCGTTAATTATCATTTACCTCTCCAATTCCTTTCTCTTTAGCTTAG 1376
Query 1446 TTCTTAAAGAATTTGTCTAAGATGGTTTGTTTTTGTTAAAGTTTGTCTCCTTTGTTGTGT 1505
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1377 TTCTTAAAGAATTTGTCTAAGATGGTTTGTTTTTGTCAAAGTTTGTCTCCTTTGTTGTGT 1436
Query 1506 CTTTTAATATGGTTT-GTAACTCAGAATGTTTGTTTGTTAATTTTATCTCCCAC 1558
||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTTGGAATATGGTTTTGTAACTCAGAATGTTTGTTTGTTAATTTTATCTCCCAC 1490
> Ahg482422 jgi|Araly1|482422|fgenesh2_kg.4__1482__AT2G34590.1
Length=1332
Score = 1123 bits (608), Expect = 0.0
Identities = 1043/1250 (83%), Gaps = 41/1250 (3%)
Strand=Plus/Plus
Query 155 AAAAATGTCTTCGATA--A-TCCATGGAGCTGGAGCT---GCTACGACGACGT-TATCGA 207
|||||||||| ||||| | |||| |||||||||||| ||| | ||| | | | |||
Sbjct 97 AAAAATGTCTGCGATACTACTCCAAGGAGCTGGAGCTGGAGCTGCAACGGC-TCTCTCGC 155
Query 208 CGTTTAATTCCGTCGATTCCAAGAAACTCTTCGTTGCTCCTTCTCGCACAAATCTTTCAG 267
||||||| || | ||| |||| ||| | |||| | |||||||||| || ||||||||
Sbjct 156 CGTTTAACTCTATTGATCCCAACAAA--C-TCGTAGTTCCTTCTCGCTCATCTCTTTCAG 212
Query 268 TGAGGAGCCAGAGATATATAGTGGCTGGATCTGATGCGAGTAAGAAGAGCTTTGGTTCTG 327
|||||||| ||||||| || || || ||||||||| ||| | || ||||||||||||
Sbjct 213 TGAGGAGCAAGAGATACATTGTTGCCGGATCTGAT---AGT-A-AA-AGCTTTGGTTCTA 266
Query 328 GACTTAGAGTTCGTCACTCTCAGAAATTGATTCCAAATGCTGTTGCGACGAAGG-AG--- 383
| || | |||||||| |||| || ||||| ||||||||||||||| |||||| ||
Sbjct 267 GCCTCATAGTTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTGCGGCGAAGGCAGACA 326
Query 384 --GC-G-GA----TACGTC-TGC-GAGCACTGGACATGAACTATTGCTTTTCGAGGCTCT 433
|| | || ||| || | | ||| |||||||||| ||||||||||||||||||||
Sbjct 327 CTGCTGCGAGCTCTACTTCAT-CAAAGC-CTGGACATGAGCTATTGCTTTTCGAGGCTCT 384
Query 434 TCAGGAAGGTCTGGAAGAAGAGATGGACAGAGATCCACATGTATGTGTTATGGGTGAAGA 493
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 385 TCAAGAAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGA 444
Query 494 TGTTGGCCATTACGGAGGTTCCTACAAGGTAACCAAAGGCCTTGCTGATAAATTTGGTGA 553
|| |||||||||||||| || ||||| ||||||||||| || ||||| || || || ||
Sbjct 445 CGTAGGCCATTACGGAGGCTCATACAAAGTAACCAAAGGGCTAGCTGACAAGTTCGGCGA 504
Query 554 CCTCAGGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGCATTGGAGC 613
||||||||||| |||||||| || |||||||| || |||||||||||||||||||| ||
Sbjct 505 TCTCAGGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCATTGGTGC 564
Query 614 TGCCATGACTGGTCTAAGACCCGTTATTGAAGGTATGAACATGGG-TTTCCTCCTCCTCG 672
||||||||| || ||||||||||| || ||||||||||||||||| |||| | ||| | |
Sbjct 565 TGCCATGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTC-TACTCTTAG 623
Query 673 CCTTCAACCAAATCTCCAACAACTGTGGAATGCTTCACTACACATCCGGTGGTCAGTTTA 732
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 624 CCTTCAACCAAATCTCCAACAACTGTGGTATGCTTCACTACACATCCGGTGGTCAATTCA 683
Query 733 CGATCCCGGTTGTCATCCGTGGACCTGGTGGAGTGGGACGCCAGCTTGGTGCTGAGCATT 792
| ||||||||||| |||||||| ||||| || ||||| || |||||||| || |||||||
Sbjct 684 CTATCCCGGTTGTAATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTTGGAGCCGAGCATT 743
Query 793 CACAGAGGT-TAGAATCTTACTTTCAGTCCATCCCTGGGATCCAGATGGTTGCTTGCTCA 851
| ||| | | | || || ||||| ||||| || ||||||||||||||||| |||||||||
Sbjct 744 CCCAGCG-TCTCGAGTCATACTTCCAGTCAATTCCTGGGATCCAGATGGTGGCTTGCTCA 802
Query 852 ACTCCTTACAACGCCAAAGGGTTGATGAAAGCCGCAATAAGAAGCGAGAACCCTGTGATT 911
|| ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||
Sbjct 803 ACACCTTACAACGCTAAAGGATTGATGAAAGCTGCGATAAGAAGCGAGAATCCTGTGATT 862
Query 912 CTGTTCGAACACGTGCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGATTACGTC 971
||||| ||||| || ||||| || || |||||||||| || ||||||||||| ||| ||
Sbjct 863 CTGTTTGAACATGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAATACATC 922
Query 972 TGTAACCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTCACTTAC 1031
||||| || |||||||| || ||||||||||| || || ||||| || || || || ||
Sbjct 923 TGTAATCTGGAAGAAGCGGAAATGGTCAGACCCGGTGAACACATCACGATACTGACGTAT 982
Query 1032 TCGCGAATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGGTATGAC 1091
|| | |||||||||||||| |||||||| ||||| || ||||||||||||||||||||
Sbjct 983 TCAAGGATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGAT 1042
Query 1092 CCCGAGGTTATCGACATCAGGTCACTGAAACCGTTCGACCT-TCACACAATTGGAAACTC 1150
|| |||||||||||||| ||||| |||| |||||||| || | |||| |||||||||||
Sbjct 1043 CCAGAGGTTATCGACATTAGGTCGTTGAAGCCGTTCGATCTCT-ACACCATTGGAAACTC 1101
Query 1151 GGTGAAGAAAACACATCGGGTTTTGATCGTGGAGGAGTGTATGAGAACCGGTGGGATTGG 1210
|||||||| ||||| |||||||| || |||||||| ||||||||||| || || || ||
Sbjct 1102 CGTGAAGAAGACACACCGGGTTTTAATTGTGGAGGAATGTATGAGAACGGGAGGAATCGG 1161
Query 1211 GGCAAGTCTT-ACAGCTGCCATCAACGAGAACTTTCATGACTACTTAGATGCTCCGGTGA 1269
|| || ||| || ||||| || ||||||||||||||||| ||||| |||||||| ||||
Sbjct 1162 AGCCAG-CTTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTGGATGCTCCAGTGA 1220
Query 1270 TGTGTTTATCTTCTCAAGACGTTCCTACACCTTACGCTGGTACACTGGAGGAGTGGACCG 1329
||||||| ||||||||||| ||||| || ||||||||||| ||| ||||||| ||||| |
Sbjct 1221 TGTGTTTGTCTTCTCAAGATGTTCCAACTCCTTACGCTGGCACATTGGAGGAATGGACGG 1280
Query 1330 TGGTTCAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAA 1379
| ||||| || ||||||||||| || || ||||| || || |||||||||
Sbjct 1281 TTGTTCAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTCTGCCAGTAA 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5