BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30130.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473232 jgi|Araly1|473232|fgenesh2_kg.1__3186__AT1G30130.1 1672 0.0
> Ahg473232 jgi|Araly1|473232|fgenesh2_kg.1__3186__AT1G30130.1
Length=1204
Score = 1672 bits (905), Expect = 0.0
Identities = 1125/1221 (92%), Gaps = 55/1221 (5%)
Strand=Plus/Plus
Query 47 agagacagag-gtagagatATGGAATTGctctttctcctctgttcaatcatctacacttc 105
||||| |||| | ||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1 AGAGATAGAGAG-AGAGATATGGAATTGCTCTATCTCCTCGGTTCAATCATCTACACTTC 59
Query 106 aatcacttccatcttcttctctcttctcctcccgtttcgcttccttctccaccgtctcct 165
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 AACCACTTCCATCTTCTTCTCTCTTCTCCTCCCGTTTCGCTTCCTTCTCCACCGTTTCCT 119
Query 166 tccttcACGCGCCGCCGTCGATCCTAATGTCT-CTTTCTACGAAGGCACAGTCTGGCACG 224
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 120 TCCTTCACGCGCCGCCGTCGATCCTAATGTCTGCTTT-TACGAAGGCACAGTCTGGCACG 178
Query 225 ACCGTCTCCGTCCTGTCCGCCACTCTTTCCGTTATTCCGTTCGTTACGCACTCTTTGACC 284
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 179 ACCGTCTCCGTCCTGTCCGCCACTCGTTCCGTTATTCCGTTCGTTACGCACTCTTCGACC 238
Query 285 TCGA-CAAAGCTATTAACACACCGCCGGATCATTTCTCCGCCGACGAAGCTCGCCGTGTT 343
|||| | ||||||||| ||| |||||||||||| |||||||||| |||||||||||||||
Sbjct 239 TCGATC-AAGCTATTACCACTCCGCCGGATCATCTCTCCGCCGATGAAGCTCGCCGTGTT 297
Query 344 TCTCGTACCACCGGGCCAATATT-TCTATTGACAATACCACCAAGCGTTGGATATGAACA 402
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 298 TCTCATACCACCGGGCCAAT-TTATCTATTGACAATACCACCAAGCGTTGGATATGAACA 356
Query 403 AAACCCATTGAGTTTATACTATTGCTATGACTTGGAAGGGTCAAGTAAGCGCTTAAGTAA 462
||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 AAACCCATTGAGTTTGTATTATTGCTATGACTTGGAAGAGTCAAGTAAGCGCTTAAGTAA 416
Query 463 ATGCATTGCTCAGGTTACAAATACGCCGTGGGGGGAACGAGTGACATTTGTATTTGACCC 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 ATGCATTGCTCAGGTTACAAATACGCCGTGGGGGGAACGAGTGACATTTGTATTCGACCC 476
Query 523 TGAATCTGACTTGGTTGCTAAATCATTACAAGTCAGTCCTTTCATGGATATGCTTGGGAA 582
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 477 TGAATCTGACTTGGTTGCTAAATCGTTACAAGTCAGTCCTTTCATGGATATGCTTGGGAA 536
Query 583 TTGGAAAATCAGAGCTAATGAACCTGGAGATGATTTATCTGTCTCCATTGCATCTCAACA 642
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 537 TTGGAAAATCAGAGCTAATGAACCTGGAGATGATTTATCTGTCTCCATTGAATCGCAACA 596
Query 643 TCCTCATTTCGGTAACTATTTCTCTGCGACATTAAAGGCGAAAAGGATACCCCT-ATCGC 701
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 597 TCCTCATCTCGGTAACTATTTCTCTGCGACATTAAAGGCGAAAAGGATACCCCTAAT-GC 655
Query 702 GGGTGTCTGATCCCGCTGTTTTCTTCTGGTTGATGCCTCATAAGGTTGCGATATGGATCT 761
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 656 GGGTGTCTGATCCCGCAGTTTTCTTCTGGTTGATGCCTCATAAGGTTGCGATATGGATTT 715
Query 762 ATTGGCATGCACTTCAACTCTGGTGGAAGAGTGTACCTTTCATTCAACACCCGAGATACT 821
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATTGGCATGCACTTAAACTCTGGTGGAAGAGTGTACCTTTCATTCAACACCCGAGATACT 775
Query 822 CGAACCCATCATACAGGGAGGAAGCAGCGAAACGCGATCAAGAACTTCGTTGCCCCGGGT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGAACCCATCATACAGGGAGGAAGCAGCGAAACGCGATCAAGAACTTCGTTGCCCCGGGT 835
Query 882 TAGATGGGTCTGATTCTGATAAAACCAACAAATTTGATGGGTTAAAAGGAGATGGTTGTA 941
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 836 TAGATGGGTCTGATTCCGATAAAACCATCAAATTTGATGGGTTAAAAGCAGATGGTTGTA 895
Query 942 GTAGTAGTTTTGGAGGATGTCGCTTTGCGTGGCGAGATGCGAACTGGCCTTGGTCATGAA 1001
|| | || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 896 GT--T--TT--GGAGGATGTCGCTTTGCGTGGCGAGATGCTAACTGGCCTTGGTCATGAA 949
Query 1002 TA-------CATACACTCTCAAGGGGG-TAGCAGATCATCAAGAGTTTCGGAATTTACGG 1053
|| |||||||||| ||||||| ||||||||| ||||||||| |||||||||||
Sbjct 950 TATTGAATACATACACTCTGAAGGGGGATAGCAGATCGTCAAGAGTT-CGGAATTTACGA 1008
Query 1054 TCATTG-TCCAATGATATGATTGGTATAAATCATTTGAAAATCTCGTCTCAAATTTAGTT 1112
||||| ||||||| |||||||||||||||||||| || | | || | | || | ||
Sbjct 1009 TCATTTATCCAATGGTATGATTGGTATAAATCATT-GAC--T-T-GTTT-AGAT--A-TT 1059
Query 1113 GGCTTGTTTAAAATTTGGCTTGAACACAAGTGAACCTTGTTGATTAATAGAAAAATCAA- 1171
||||| || || |||||||||||||||||| ||||||||| |||
Sbjct 1060 GGCTT-------------CT--AA-ACAAGTGAACCTTGTTGACAAATAGAAAA--CAAA 1101
Query 1172 CTTTGCATTTTGATTGATTCGTTTGTAATAATTCTCATCTCCGAAAATCCTAACCTCTGT 1231
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 1102 CTTTGCATTTTGATTGATTTGTTTGTAATAATTCTCATCTCCGAAAATCCTAATCTTTGT 1161
Query 1232 TTGTTGATAAGTCTTC-ATGT 1251
|||||||||||| ||| ||||
Sbjct 1162 TTGTTGATAAGTTTTCGATGT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5