BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30160.2
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473234 jgi|Araly1|473234|fgenesh2_kg.1__3188__AT1G30160.2 1653 0.0
Ahg922068 jgi|Araly1|922068|scaffold_103349.1 470 1e-131
Ahg473236 jgi|Araly1|473236|fgenesh2_kg.1__3190__AT1G30170.1 143 3e-33
> Ahg473234 jgi|Araly1|473234|fgenesh2_kg.1__3188__AT1G30160.2
Length=1258
Score = 1653 bits (895), Expect = 0.0
Identities = 1166/1287 (91%), Gaps = 57/1287 (4%)
Strand=Plus/Plus
Query 15 TCTGCAATAATGTCTCGGCTTCTCTCCAAGCTCTCT-CCTCTCATTCACAA-AAGCAGTA 72
||| ||||||||||||| ||| |||||||||||||| ||| |||||||||| || |||||
Sbjct 1 TCTACAATAATGTCTCGACTTGTCTCCAAGCTCTCTCCCT-TCATTCACAAGAA-CAGTA 58
Query 73 GGAACATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTTTCTATTTGTACCGTTG 132
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 59 GGAGCATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTTTCTATTTGTACCATTA 118
Query 133 TGGAACCCTCTCCGGACGGCAACCTCGGACAAGTCCTGTTGTTCAACATACCAGATATGA 192
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 119 TGGAGCCCTCTCCGGACGGCAACCTCGGACAACTCCTGTTGTTCAACATACCAGATTTGA 178
Query 193 AGTTAGTCACAGCGGACAAAATATATCCCGACGAGCTTTATGACGCCCAGTTGGTGGGAG 252
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTTAGTCACAGCGGACAAAACATATCCCGACGAGCTTTATGACGCCCAGTTGGTGGGAG 238
Query 253 CTTCCCATGGATGGGGACTTTTCTCCGATAGAACAAATCGGTCGGCACTTATCAGCGACT 312
|||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 239 CTTCTCATGGATGGGGACTTTTCTCCAATAGAACAAATCGGTCGGTACTTCTCAGCGACT 298
Query 313 ATTTGAACCCCTATGCTTCCAAGTCAAAACCAAAGATGATTCATCTACCtttttttACTC 372
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 299 ATTTGAACCCCTATGCTTCCAAGTCAAAACCAAAGATGATTCATCTGCCATTTTTTACTC 358
Query 373 CAATGTACTCTGGCCAAACCGAAGTCGTGTGCAACGTGGCAATGTCCTCTCCTCCTCCTG 432
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAACGTACTCTGGCCAAACCGAAGTCGTGTGCAACGTGGCAATGTCCTCTCCTCCTCCTG 418
Query 433 ATCAAGACGACGACCATGAAGATTGGGTAGTTGGCATCAAGTTCTTGGGTAGACAGCTTA 492
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 ATCAAGACGACGACCAAGAAGATTGGGTCGTTGGCATCAAGTTCTTGGGTAGACAGCTTA 478
Query 493 GCCTCTGCAGGCCTCGTCATGACCTTCGTTGGACTAACATCCTAACCCCTTTTGAGTCGT 552
| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 GTCTCTGCAGGCCCCGTCGTGACCTTCGTTGGACTAACATCCTAACCCCTTTTGAGTCAT 538
Query 553 GGGAAGTCTCAGAACTCATGTATTCTAAAAAAGACCAACGGTTCTATTTGCTTGCTCCTG 612
||||| ||||| |||| |||||||| || ||||||||| |||||||||||||||||||||
Sbjct 539 GGGAAATCTCAAAACTAATGTATTCCAAGAAAGACCAAAGGTTCTATTTGCTTGCTCCTG 598
Query 613 GAGGCAACTACTTATGCTCCTGGGATCTCAACTTCAAGGAAGACAAGAAGCCTAAGTTC- 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGGCAACTACTTATGCTCCTGGGATCTCAACTTCAAGGAAGACAAGAAGCCTAAGTTCA 658
Query 672 -------CA-------T--G----A-G--TTGGTCTTGCACAACCTTCCCAACATGCCAC 708
|| | | | | |||||||||||| ||||||||||||||||||
Sbjct 659 AGGAAGACAAGAAGCCTAAGTTCCATGAGTTGGTCTTGCACGACCTTCCCAACATGCCAC 718
Query 709 GTTCCCTCTGGAAGCAGTTAGATTCCTACGGCAGAGAGGATCATTGGGTGGAGTCACCTT 768
|||||| || ||||| ||| ||||| | | |||| |||||||||||||||||||||||||
Sbjct 719 GTTCCCACTCGAAGCTGTTGGATTCATTCAGCAGGGAGGATCATTGGGTGGAGTCACCTT 778
Query 769 CCGGCGAAAGTTTCCTTGTCAAATGGTTTTGTGAATACTCGCCTGAAAACACCAGTAACT 828
| ||||||||| | | || | ||||||| |||||||||||||||||||
Sbjct 779 CTGGCGAAAGTA-C-T-GT-----G--------AATACTCCCCTGAAAACACCAGTAACT 822
Query 829 GGTGCAAGTCACCGATTGTAATGGTGTTCAGAGAGGAAGAGACGAAAGATGGAAGGAAAA 888
||||||| ||||| | ||| |||| |||||||||||| ||| ||||||||||
Sbjct 823 GGTGCAAATCACCAACTGTTCTGGTTTTCAGAGAGGAA-AGA-------TGGAAGGAAAC 874
Query 889 ACATGCGTTACACAGATGACATTGGAGATCTATGCATTTTCATTTCGAAGGGAGAGGATT 948
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 875 ACATGCGTTACACAGATGACATTGGAGATTTGTGCATTTTCATTTCAAAGGGAGAGGATT 934
Query 949 TCTGCGTCAAGGCTAGCTCTTGCCCTGGACTCCAACCTAACTCCATCTCTTTACATGGCC 1008
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 935 TCTGCGTCAAGGCTAGCTCTCACCCTGGACTCCAACCTAACTCCATCTGTTTACATGGCC 994
Query 1009 GTTTGTTTGCGATTCTTAATCTCACGAAA-AGAACCATGGGTTGCTACGAATATCCCCAA 1067
|||||||||||||||| |||||||| ||| |||||| | |||||||||||||||||| ||
Sbjct 995 GTTTGTTTGCGATTCTCAATCTCAC-AAATAGAACCCTCGGTTGCTACGAATATCCCGAA 1053
Query 1068 GGCATACCAAAAAGGATTCCCTATTTACCCTACTGGCTTCCTCCGTTTTCTCCTTAGCGC 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GGCATACCAAAAAGGATTCCCTATTTACCCTACTGGCTTCCTCCGTTTTCTCCTTAGCGC 1113
Query 1128 TCTAGTTGCTTCATTAGTCCTTATTGTGTGGTTTGTTCTTTTAGGTTTGGATTACTAAGA 1187
|||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TCTACTTGCTTCGTTAGTC-TTATTGTGTGGTTTGTTCTTTTAGGTTTGGATTACTAAGA 1172
Query 1188 TCATATAATTATATTTTTCTAATCTGAGAAAATTGAAGACTTCATTTGGTATTTGGCTGG 1247
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1173 TCATCTAATTATATTTCTCTAATCTGAGAAAATTGAAGACTTCATTTGGTATTTGGTTGA 1232
Query 1248 TGTCACATGGAGTATAA-ATCTGATGT 1273
|||||||||||||| || |||||||||
Sbjct 1233 TGTCACATGGAGTA-AATATCTGATGT 1258
> Ahg922068 jgi|Araly1|922068|scaffold_103349.1
Length=704
Score = 470 bits (254), Expect = 1e-131
Identities = 326/360 (91%), Gaps = 7/360 (2%)
Strand=Plus/Plus
Query 4 TTTGGGTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTC-TCTCCTCTCATTCAC 62
||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||
Sbjct 1 TTTGGGTTTCTTCTGCAATAATGTCTCGGCTCCTCTCCAAGCTCGT-TCCCCTCATTCAC 59
Query 63 AAAAGCAGTAGGAACATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTTTCTATT 122
|| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 AAGAGCAGTAGGAGCGTTCGTTCGTTTTCATCCTCCACGACCGGCCCATGTGTTTCTATT 119
Query 123 TGTACCGTTGTGGAACCCTCTCC-G--GACGGCAACCTCGGACAAGTCCTGTTGTTCAAC 179
| | | || |||||||||| || | | |||||||||||||||||||||||||||||||
Sbjct 120 GGCAGCATTATGGAACCCTCGCCAGACGGCGGCAACCTCGGACAAGTCCTGTTGTTCAAC 179
Query 180 ATACCAGATATGAAGTTAGTCACAGCGGACAAAATATATCCCGACGAGCTTTATGACGCC 239
||||||||| | |||||||||| ||||||||||| ||||||| | |||||||||||||||
Sbjct 180 ATACCAGATTTCAAGTTAGTCAGAGCGGACAAAACATATCCCAATGAGCTTTATGACGCC 239
Query 240 CAGTTGGTGGGAGCTTCCCATGGATGGGGACTTTTCTCCGATAGAACAAATCGGTCGGCA 299
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
Sbjct 240 CAGTTGGTGGGAGCTTCCCATGGATGGGGATTTTTCTCCAATAGAACAGATCGGTCGTTA 299
Query 300 CTTATCAGCGACTATTTGAACCC-CTATGCTTCCAAGTCAAAACCAAAGATGATTCATCT 358
||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||| |||
Sbjct 300 CTTATCAGCGACTATCTGAACCCTC-ATGCTTCCAAGTCACAACCAAAGATGATTCCTCT 358
> Ahg473236 jgi|Araly1|473236|fgenesh2_kg.1__3190__AT1G30170.1
Length=1322
Score = 143 bits (77), Expect = 3e-33
Identities = 418/573 (73%), Gaps = 61/573 (11%)
Strand=Plus/Plus
Query 1 ATTTTTGGGTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTCTCTCCTC-TCATT 59
|||||||||||||||||||||||||||||||| |||||||||||||| |||| | | |||
Sbjct 51 ATTTTTGGGTTTCTTCTGCAATAATGTCTCGGTTTCTCTCCAAGCTCGCTCC-CGTTATT 109
Query 60 CACAAAAGCAGTAGGAACATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTT-TC 118
||||| || | || | ||||||||||||||||||| ||||| ||||| | | || ||
Sbjct 110 CACAAGAG--G-AG---CGTTCGTTCGTTTTCATCCTCCACGACAGGCCCGTAT-TTGTC 162
Query 119 TATTTGTAC-C-GTTGTGGAACCCTC-TCCGGACGGC------AACCTCGGACAAGTCCT 169
|| || | | || | ||||||| || ||| ||| ||| ||||| |||| |
Sbjct 163 GCTTAGT-CTCAGT-GCAAAACCCTCGTC-GGAAGGCGTCCTCAACATCGGAGAAGTGGT 219
Query 170 GTTGTTCAACA-TACCAGATATGAAGTTAGTCA-C---AGCGGACAAAATATATCCC-GA 223
|||| | || | | | | | || |||| ||| | | |||||||| | || || ||
Sbjct 220 TTTGTACGACCCTGCTAAACAAGA-GTTACTCAACCTTA-CGGACAAAGCA-ATTCCAGA 276
Query 224 CGAGCTTTATGAC-GCCCAGTTGG-TGGGAGCTTCCCATGGATGGGGACTTTTCTCCGAT 281
|| | | || ||| | | || | ||||||||| | |||||| | ||||||| ||
Sbjct 277 AGAAATCG-TCACAGCCAAAT-GGATCGGAGCTTCCAAGGGATGGTCATTTTTCTCTGAC 334
Query 282 AGAACAA-ATCGGTCG-GCACTTATCAGCGACTATTTGAACCCCTATGCTTCCAAGTCAA 339
| | ||| | || | | | ||| |||| ||||| ||||||||| | |||| ||| ||||
Sbjct 335 ACA-CAAGACCGTT-GTGTACTCATCACCGACTCTTTGAACCCATGGGCTTGCAAATCAA 392
Query 340 AACCAAAGATGATT-CATCTACCtttttttACTCCAATGTACTCTGGCCAAACCGAAGTC 398
| || ||||| || | ||| ||| ||| ||| ||| |||| ||||||| || ||
Sbjct 393 ACCCCAAGATCTTTAC-TCTGCCTCCACTTAATCCTCTGTTCTCTTGCCAAACTGATGT- 450
Query 399 G-TGTGCAACGTGGCAATGTCCTCTCCTCCTCCTGATCAAGACGACGACCATGAAGATTG 457
| | || |||||||||||||||||| | ||||||| ||||| |||||| ||
Sbjct 451 GATCTGGAACGTGGCAATGTCCTCT--TG-TCCTGAT---GACGA------TGAAGACTG 498
Query 458 GGTAGTTGGCATCAAGTTCTTGGGTAGAC-AGCTTAGCCTCTGCAGGCCTCG-TCATGAC 515
||| ||||| ||||||| ||||||| ||| || | || |||| || || | || ||||
Sbjct 499 GGTTGTTGGTATCAAGTCCTTGGGT-GACCAGGTGAGTTTCTGTAGACC-CAATCGTGAC 556
Query 516 CTT-CGTTGGACTAACATCCTAACCCCTTTTGA 547
|| |||||||||||||||| ||| ||||||||
Sbjct 557 -TTGCGTTGGACTAACATCCAAACTCCTTTTGA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5