BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30170.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473236 jgi|Araly1|473236|fgenesh2_kg.1__3190__AT1G30170.1 1917 0.0
Ahg922068 jgi|Araly1|922068|scaffold_103349.1 121 2e-26
> Ahg473236 jgi|Araly1|473236|fgenesh2_kg.1__3190__AT1G30170.1
Length=1322
Score = 1917 bits (1038), Expect = 0.0
Identities = 1178/1245 (95%), Gaps = 11/1245 (1%)
Strand=Plus/Plus
Query 15 CTCTCCCTCTTTGAATTAAGGGTAGAGAGACTCCAAAATACATCAACTTAATTTTTGGGT 74
||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 CTCTCTCTCTTTTAGTTAAGGGTAGAGAGACTCCAAAGTACATCAACTTAATTTTTGGG- 59
Query 75 TTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTCTCTCCCCTCATTCACAAGAGG 134
||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||
Sbjct 60 -TTTCTTCTGCAATAATGTCTCGGTTTCTCTCCAAGCTCGCTCCCGTTATTCACAAGAGG 118
Query 135 AGCGTTCGTTCGTTTTCATCCTCCACGACAGGTCCC-TATTTG-CAGCTTAGTCTCAGTG 192
|||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||
Sbjct 119 AGCGTTCGTTCGTTTTCATCCTCCACGACAGG-CCCGTATTTGTC-GCTTAGTCTCAGTG 176
Query 193 CAAAACCCTCGTCGGAAGGCGTCGTCAACATCGGAGAAATCGTTTTGTACGACCCTGCTA 252
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 177 CAAAACCCTCGTCGGAAGGCGTCCTCAACATCGGAGAAGTGGTTTTGTACGACCCTGCTA 236
Query 253 AACAAGAGTTACTCAACCTTACGGACAAACCAATTCCAGAAGAAATCGTGACAGCCAAAT 312
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 237 AACAAGAGTTACTCAACCTTACGGACAAAGCAATTCCAGAAGAAATCGTCACAGCCAAAT 296
Query 313 GGATCGGAGCTTCCAAGGGATGGGCATTCTTCT-TGGACACACAAGACCGTTGTGTACTC 371
||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||
Sbjct 297 GGATCGGAGCTTCCAAGGGATGGTCATTTTTCTCT-GACACACAAGACCGTTGTGTACTC 355
Query 372 ATCACCGACTCTTTGAACCCATGGGCATGCAAATCAAACCCCAAGCTCTTAACTCTGCCT 431
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 356 ATCACCGACTCTTTGAACCCATGGGCTTGCAAATCAAACCCCAAGATCTTTACTCTGCCT 415
Query 432 CCACTTAATCCTCTGTTCTCTTGCCAAACTGATGTGATCTGGAACGTGGCAATGTCCTCT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CCACTTAATCCTCTGTTCTCTTGCCAAACTGATGTGATCTGGAACGTGGCAATGTCCTCT 475
Query 492 TGTCCTGATGACGATGAAGACTGGGTTGTTGGCATCAAGTCCTTGGGTGACCAGGTGAGT 551
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 476 TGTCCTGATGACGATGAAGACTGGGTTGTTGGTATCAAGTCCTTGGGTGACCAGGTGAGT 535
Query 552 TTCTGTAGGCCTCG-TCGAGACTTGCGTTGGACTAAGTTCCAAACCCCTTCTGACCACTT 610
|||||||| || | ||| ||||||||||||||||| ||||||| |||| |||||||||
Sbjct 536 TTCTGTAGACC-CAATCGTGACTTGCGTTGGACTAACATCCAAACTCCTTTTGACCACTT 594
Query 611 TCCAACCTCGAATCTGACGTATTCCAAGAGAGATCGGAAGTTCTACTTGCCTGGTCCTGG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCCAACCTCGAATCTGACGTATTCCAAGAGAGATCGGAAGTTCTACTTGCCTGGTCCTGG 654
Query 671 AGGCCATCACTTGTTATCCTACGATCTTGACTTCAACAAAGCCGACCAGCCAGAGTTCCA 730
|||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||
Sbjct 655 AGGCCATCACTTGTTATCCTACAATCTTGACTTCGACAAAGCCGACCATCTTGAGTTCCA 714
Query 731 TGAGTTGCAGTTTCGCAACTTTCCAGAGTCGTTGAAGTATGACTCAGAGCTGTCGGAGCT 790
||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 715 TGAGTTGCAGTTTCGCATCTTTCAAGAGTCGTTCAAGTATGACTCGGAGCTGTCGGAGAT 774
Query 791 GTTTCCTTCTTCTTGTAGGACGGAACGCTTTGTGGAGTCACCCTCCGGAGATGAACGTTT 850
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 775 GTTTCCTTCTTCTTGTAGAACAGAACACTTTGTGGAGTCACCCTCCGGAGATGAACGTTT 834
Query 851 CCTTGTCAAATGGTACGCCAAGGGTTGTTTGGCTTCTTCGAGTAAAATCACCTATGAAAC 910
||| |||||||||||||||||| | |||||||||| |||||||||||||||||| |||||
Sbjct 835 CCTCGTCAAATGGTACGCCAAGAGCTGTTTGGCTTATTCGAGTAAAATCACCTACGAAAC 894
Query 911 GCAGAGGTTCATGGTATTTAGAGAGGAGGAGACTACGGAAGAAAGATTCATGTGTTACAC 970
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 895 GCAGAGGTTCATGGTTTTTAGAGAGGAGGAGACTACGGAAGGAAGATTCATGTGTTACAC 954
Query 971 TGATGACATTGGAGATTTGTGCATCTTTGTTTCAAAGAGCGAGGCTTTTTGCGTCCCGGC 1030
|||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |||
Sbjct 955 TGATGACATTGGAGATCTATGCATCTTTGTTTCAAAGAGTGAGGCTTTTTGCGTCCTGGC 1014
Query 1031 AAGCTCTTATCCTGGCCTTAAGCCAAACTCCATCTATTTTGTTGGCTTTGGCTTAGGTAT 1090
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAGCTCTTATCCTGGCCTTAAGCCAAACTCCATCTATTTTGTTGGCTTTGGCTTAGGTAC 1074
Query 1091 ATACGATCTTACCACCAGAAATGTCTCTATTTTTCGAGCTCCCAAAGGTGCACTGAATCA 1150
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1075 ATACGATCTTACCACCAGAGATGTCTCTACTTTTCGAGCTCCCAAAGGTGCACTGAATCA 1134
Query 1151 AATTGTGTCCCCTTACTGGTTTCCTCCAGCTTCTAGCTAGTGCTAGGATTGTATGGCTTT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AATTGTGTCCCCTTACTGGTTTCCTCCAGCTTCTAGCTAGTGCTAGGATTGTATGGCTTT 1194
Query 1211 GTTTGCTTTGGTTTTACTCTTTCTCTCGACTTGCTAAGATCTAAT 1255
|||||||| ||||| ||| |||||||| |||||||||||||||||
Sbjct 1195 GTTTGCTTCGGTTTGACT-TTTCTCTCCACTTGCTAAGATCTAAT 1238
Score = 135 bits (73), Expect = 6e-31
Identities = 81/85 (95%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1283 TATTAGGAGTTTCTTATGATCAATTGAATAATTCTTCTATAAATATATTTTACATACACA 1342
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1238 TATTAGGAGTTTATTATGATCAATGGTATAATTCTTCTATAAATATATTTTACATACACA 1297
Query 1343 ATTCACTTCATTTGTTTTTTACATG 1367
||||||||||||||||||| |||||
Sbjct 1298 ATTCACTTCATTTGTTTTTAACATG 1322
> Ahg922068 jgi|Araly1|922068|scaffold_103349.1
Length=704
Score = 121 bits (65), Expect = 2e-26
Identities = 97/110 (88%), Gaps = 11/110 (10%)
Strand=Plus/Plus
Query 68 TTTGGGTTTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTC-TCTCCCCTCATTC 126
|||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1 TTTGGG--TTTCTTCTGCAATAATGTCTCGGCTCCTCTCCAAGCTCGT-TCCCCTCATTC 57
Query 127 ACAAGAG--G-AG---CGTTCGTTCGTTTTCATCCTCCACGACAGGTCCC 170
||||||| | || ||||||||||||||||||||||||||| || |||
Sbjct 58 ACAAGAGCAGTAGGAGCGTTCGTTCGTTTTCATCCTCCACGACCGG-CCC 106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5