BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30200.2 Length=1737 Score E Sequences producing significant alignments: (Bits) Value Ahg473238 jgi|Araly1|473238|fgenesh2_kg.1__3192__AT1G30200.2 2357 0.0 > Ahg473238 jgi|Araly1|473238|fgenesh2_kg.1__3192__AT1G30200.2 Length=1690 Score = 2357 bits (1276), Expect = 0.0 Identities = 1579/1720 (92%), Gaps = 42/1720 (2%) Strand=Plus/Plus Query 1 AAAAACAATCACGAGCCAACACctcttcatcttctccaaatcaatccatcaatggagtct 60 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 AAAAACAATCACGAGCCAACACCTCTTCATCTTCTCC-AATCAATCCATCAATGGAG--- 56 Query 61 tctcccatctctctctcttcctcctcagatctcacactctGAAAAATCCCCCAAAGCCAT 120 ||| || || ||||||| | |||| | | | | ||| |||| || | ||||||||| Sbjct 57 TCT-CC-TC-CTCTCTC-T-CTCC-C---T-T--C-CTC--AAAATTCTCTCAAAGCCAT 101 Query 121 GTCTTACCTTCTTCGCTCCGATCCGGTTTCACGAATCCACCCAGAACCTCAATCTCTAAC 180 |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 102 GTCTTATCTTCTTCGCTCCGATCCAGTTTCACGAATCCACCCAGAGCCTCAATCTCTAAC 161 Query 181 CTCTTTCGACCACTTCGATCTCCTCCCTGACTCTCTCCTCCTCTTAATCTTCGACAAAGT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 162 CTCTTTCGACCACTTCGATCTCCTCCCTGACTCTCTCCTCCTCTTAATCTTCGATAAAGT 221 Query 241 CGCCGACGTCAAAGATCTCGGCCGTTGCTGCATCGTATCTCGTAGATTCCACTCTCTCGT 300 ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 222 CGCCGACGTCAAAGATCTCGGCCGTTGCTGCATCGTATCCCGTAGATTTCACTCTCTTGT 281 Query 301 CCCTTTCGTTGAGAACGTTCTCGTCCGTGTTGATTGTGTTATCTCCGACGATGATTCCTC 360 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 282 CCCTTTCGTTGAGAACGTTCTCGTCCGTGTTGATTGTGTTATCTCCGATGATGATTCTTC 341 Query 361 TTCCTCCGACGAGAATCATCGATTCTCTTTAAACACTGCATCGATCTCAGACGCCGGCGG 420 |||||| |||||||||| |||||||||| | ||| |||| ||||| || ||||||| ||| Sbjct 342 TTCCTCTGACGAGAATCGTCGATTCTCTCTCAACGCTGCTTCGATTTCTGACGCCGCCGG 401 Query 421 TGCTGGTGGCTCCTTCTCCGCCTTGTTCCGTCTCGTATTCGCTCCAATTTTCAAACCGTT 480 ||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 402 TGCTGGTGGTTCTTTCTCCGCCTTGTTTCGTCTCGTCTTCGCTCCAATTTTCAAACCGTT 461 Query 481 TCAAATGTTAGGGCAGATTCTAGGACCGAAACGATCGTC-T--TC-T--TCGTTCGATGC 534 |||| |||||||||| |||||| |||||||||||| || | || | ||||| ||||| Sbjct 462 TCAAGCGTTAGGGCAGTTTCTAGTACCGAAACGATCATCGTCATCGTCGTCGTTTGATGC 521 Query 535 GTCGTTTTCAGCGATTAACGATGAGATCGGCGTAACGCATCACTCTCCGACTCAGGTATT 594 ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 522 ATCGTTTTCAGCGATTAACGATGAAATCGGCGTTACGCATCACTCTCCGACTCAGGTATT 581 Query 595 GAAAAACTTCGGTGAGATTCGGTTTTTGAAAATCGAACTTCCTACAGGAGAATTAGGTAT 654 |||||| |||||||||||||||||| ||| |||||||||||| || || |||||||| || Sbjct 582 GAAAAATTTCGGTGAGATTCGGTTTCTGAGAATCGAACTTCCGACTGGTGAATTAGGAAT 641 Query 655 CGAGGATGGTATATTGTTGAAATGGAGAGCTGATTTTGGATCTACGCTTGATAATTGTAT 714 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 CGAGGATGGTATTTTGCTGAAATGGAGAGCTGATTTTGGATCTACGCTTGATAATTGTAT 701 Query 715 GATACTTGGAGCATCTTCGGTGATTC-AGTCGAATTCA-GTGAAGAATCAT-GAGAATTC 771 ||| ||||| |||||||||||||||| | |||||| || || ||||||| | |||||||| Sbjct 702 GATTCTTGGTGCATCTTCGGTGATTCTA-TCGAAT-CAAGTCAAGAATC-TCGAGAATTC 758 Query 772 GGTTGATGAAGACAATGGTAACATACCTGAGTCGTTTTACACTAATGGAGGGCTTAAGCT 831 |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || Sbjct 759 GGTTGATGAAGACAATGGTAACATACCTGAATCGTTTTACACTAATGGCGGACTTAAACT 818 Query 832 TCGTGTGGTTTGGACGATAAGCTCGTTAATCGCTGCGTCGGCTCGGCATTATCTTCTTCA 891 |||||||||||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 819 CCGTGTGGTTTGGACGATAAGCTCGTTAATCGCCGCCTCAGCTCGGCATTATCTTCTTCA 878 Query 892 ACCGATTATCAATGAGCATAAGTCGTTAGATCGTTTGGTTTTATCTGATGCTGATGGGCA 951 ||||| |||| |||||| ||| ||||||||||||||||| | |||||||||||||| || Sbjct 879 GCCGATCATCACTGAGCACAAGACGTTAGATCGTTTGGTTCTCTCTGATGCTGATGGACA 938 Query 952 AGGTGTTTTGTGTATGAATAGAGAACAGCTTGAAGAGCTTAGAGTTACTCCTTTATCAGC 1011 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 939 AGGTGTTTTGTGTATGAATAGAGAACAGCTTGAAGAGCTTAGAGTTACTCCTTTATCGGC 998 Query 1012 TTCTTCTGCTTCGAAGAGGACGCTTGTGCCTGCGTTGAATATGAGGTTGTGGTATGCTCC 1071 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 999 TTCTTCTGCTTCGAAGAGGACGCTTGTGCCTGCATTGAATATGAGGTTGTGGTATGCTCC 1058 Query 1072 GGAATTGGATTTACCTGATGGGACGGTGTTGAAAGGTGCGACATTGGTGGCTATTAGGCC 1131 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1059 GCAATTGGATTTACCTGATGGCACGGTGTTGAAAGGTGCGACATTGGTGGCTATTAGGCC 1118 Query 1132 GAGTGAGTCTAAGAAGGAAGTTTGTGATGCTTCTTGGTTGTCTGATGCTTTTGAGGAACC 1191 ||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1119 GAGTGAGTCGAAGAAAGAAGTTTGTGATGCTTCTTGGTTGTCGGATGCATTTGAGGAACC 1178 Query 1192 GTTTGGGACTGTGGCGAAGATGTTGATCAAGAGGAGGACTTATTGTTTGGAGATGAACTC 1251 || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1179 GTATGGGACTGCGGCGAAGATGTTGATCAAGAGGAGGACTTATTGTCTGGAGATGAACTC 1238 Query 1252 GTTCTGATTTCGCATTATGACCGGTTTCAGACATTTTGCAGATGGTGGGAGCAAACAAAT 1311 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 GTTCTGATTTCGCAGTACGACCGGTTTCAGACATTTTGCAGATGGTGGGAGCAAACAAAT 1298 Query 1312 CCACATATGTTGGAGAATGAAGGAAAGAGAACAGAGAGTTCACAAATGTCCTGAAGCCAA 1371 ||||||||||||||||||| ||||||| || ||||||| ||||| ||||||||||||||| Sbjct 1299 CCACATATGTTGGAGAATGGAGGAAAGGGATCAGAGAGATCACATATGTCCTGAAGCCAA 1358 Query 1372 AAACCGCAAATCTCTCGACtttttttGAGACATACTGCTTCGCCAGTCATGAGGCCTGCG 1431 |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| Sbjct 1359 AAACCGCAAATCTCTCGACTTTTT--GACACATACTGCTTCGCCAGTCATGAGGAGTGCG 1416 Query 1432 TCGAATGAATCTGCAGGCATGGAGGATGCCGAAGGGAGGTTCTCTGAAACCGAAGAAGAA 1491 |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1417 TCGAAT----CTGCAGGCATGGAGGATGCCTAAGGGAGGTTCTCTGAAACCGAAGAAGAA 1472 Query 1492 CGCCATTGTACATACACTCTTGTAAAAGAAGTCTGCGAGTGAGGAAGAACATGTGTGT-G 1550 | |||||||||||||||||||||||||||||||||||| |||| |||| |||||||| | Sbjct 1473 CACCATTGTACATACACTCTTGTAAAAGAAGTCTGCGAATGAGCAAGAGTATGTGTGTTG 1532 Query 1551 ATCTGTGTTAAAAAGAGGCACATATGAAGGATGTGAATCGTCGTAACACGTAAGGGATTA 1610 ||| |||| ||||||| | ||||| | ||||| |||||||||||||| ||||||||||| Sbjct 1533 -TCTTTGTTTAAAAGAGACGCATATCA-GGATGGGAATCGTCGTAACATGTAAGGGATTA 1590 Query 1611 TGTTACAAAAGAGTCTGTAAT-AATATGTATAAGCTTTATTTCGACACTTTGATGTTCTG 1669 ||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct 1591 TGTTACAAAAGAGTCTGTAATGAATATTTTTAAGCTTTACTTCGACACTTTGATGTTCTG 1650 Query 1670 TT-CTTGATACTTGGATACTCTGTTCTTGAAGCTAACTAC 1708 || ||||||||||||||||||||||||||||||||||||| Sbjct 1651 TTTCTTGATACTTGGATACTCTGTTCTTGAAGCTAACTAC 1690 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65172409195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5