BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30200.2
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473238 jgi|Araly1|473238|fgenesh2_kg.1__3192__AT1G30200.2 2357 0.0
> Ahg473238 jgi|Araly1|473238|fgenesh2_kg.1__3192__AT1G30200.2
Length=1690
Score = 2357 bits (1276), Expect = 0.0
Identities = 1579/1720 (92%), Gaps = 42/1720 (2%)
Strand=Plus/Plus
Query 1 AAAAACAATCACGAGCCAACACctcttcatcttctccaaatcaatccatcaatggagtct 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAACAATCACGAGCCAACACCTCTTCATCTTCTCC-AATCAATCCATCAATGGAG--- 56
Query 61 tctcccatctctctctcttcctcctcagatctcacactctGAAAAATCCCCCAAAGCCAT 120
||| || || ||||||| | |||| | | | | ||| |||| || | |||||||||
Sbjct 57 TCT-CC-TC-CTCTCTC-T-CTCC-C---T-T--C-CTC--AAAATTCTCTCAAAGCCAT 101
Query 121 GTCTTACCTTCTTCGCTCCGATCCGGTTTCACGAATCCACCCAGAACCTCAATCTCTAAC 180
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 102 GTCTTATCTTCTTCGCTCCGATCCAGTTTCACGAATCCACCCAGAGCCTCAATCTCTAAC 161
Query 181 CTCTTTCGACCACTTCGATCTCCTCCCTGACTCTCTCCTCCTCTTAATCTTCGACAAAGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 162 CTCTTTCGACCACTTCGATCTCCTCCCTGACTCTCTCCTCCTCTTAATCTTCGATAAAGT 221
Query 241 CGCCGACGTCAAAGATCTCGGCCGTTGCTGCATCGTATCTCGTAGATTCCACTCTCTCGT 300
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 222 CGCCGACGTCAAAGATCTCGGCCGTTGCTGCATCGTATCCCGTAGATTTCACTCTCTTGT 281
Query 301 CCCTTTCGTTGAGAACGTTCTCGTCCGTGTTGATTGTGTTATCTCCGACGATGATTCCTC 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 282 CCCTTTCGTTGAGAACGTTCTCGTCCGTGTTGATTGTGTTATCTCCGATGATGATTCTTC 341
Query 361 TTCCTCCGACGAGAATCATCGATTCTCTTTAAACACTGCATCGATCTCAGACGCCGGCGG 420
|||||| |||||||||| |||||||||| | ||| |||| ||||| || ||||||| |||
Sbjct 342 TTCCTCTGACGAGAATCGTCGATTCTCTCTCAACGCTGCTTCGATTTCTGACGCCGCCGG 401
Query 421 TGCTGGTGGCTCCTTCTCCGCCTTGTTCCGTCTCGTATTCGCTCCAATTTTCAAACCGTT 480
||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 402 TGCTGGTGGTTCTTTCTCCGCCTTGTTTCGTCTCGTCTTCGCTCCAATTTTCAAACCGTT 461
Query 481 TCAAATGTTAGGGCAGATTCTAGGACCGAAACGATCGTC-T--TC-T--TCGTTCGATGC 534
|||| |||||||||| |||||| |||||||||||| || | || | ||||| |||||
Sbjct 462 TCAAGCGTTAGGGCAGTTTCTAGTACCGAAACGATCATCGTCATCGTCGTCGTTTGATGC 521
Query 535 GTCGTTTTCAGCGATTAACGATGAGATCGGCGTAACGCATCACTCTCCGACTCAGGTATT 594
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 522 ATCGTTTTCAGCGATTAACGATGAAATCGGCGTTACGCATCACTCTCCGACTCAGGTATT 581
Query 595 GAAAAACTTCGGTGAGATTCGGTTTTTGAAAATCGAACTTCCTACAGGAGAATTAGGTAT 654
|||||| |||||||||||||||||| ||| |||||||||||| || || |||||||| ||
Sbjct 582 GAAAAATTTCGGTGAGATTCGGTTTCTGAGAATCGAACTTCCGACTGGTGAATTAGGAAT 641
Query 655 CGAGGATGGTATATTGTTGAAATGGAGAGCTGATTTTGGATCTACGCTTGATAATTGTAT 714
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CGAGGATGGTATTTTGCTGAAATGGAGAGCTGATTTTGGATCTACGCTTGATAATTGTAT 701
Query 715 GATACTTGGAGCATCTTCGGTGATTC-AGTCGAATTCA-GTGAAGAATCAT-GAGAATTC 771
||| ||||| |||||||||||||||| | |||||| || || ||||||| | ||||||||
Sbjct 702 GATTCTTGGTGCATCTTCGGTGATTCTA-TCGAAT-CAAGTCAAGAATC-TCGAGAATTC 758
Query 772 GGTTGATGAAGACAATGGTAACATACCTGAGTCGTTTTACACTAATGGAGGGCTTAAGCT 831
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 759 GGTTGATGAAGACAATGGTAACATACCTGAATCGTTTTACACTAATGGCGGACTTAAACT 818
Query 832 TCGTGTGGTTTGGACGATAAGCTCGTTAATCGCTGCGTCGGCTCGGCATTATCTTCTTCA 891
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 819 CCGTGTGGTTTGGACGATAAGCTCGTTAATCGCCGCCTCAGCTCGGCATTATCTTCTTCA 878
Query 892 ACCGATTATCAATGAGCATAAGTCGTTAGATCGTTTGGTTTTATCTGATGCTGATGGGCA 951
||||| |||| |||||| ||| ||||||||||||||||| | |||||||||||||| ||
Sbjct 879 GCCGATCATCACTGAGCACAAGACGTTAGATCGTTTGGTTCTCTCTGATGCTGATGGACA 938
Query 952 AGGTGTTTTGTGTATGAATAGAGAACAGCTTGAAGAGCTTAGAGTTACTCCTTTATCAGC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 939 AGGTGTTTTGTGTATGAATAGAGAACAGCTTGAAGAGCTTAGAGTTACTCCTTTATCGGC 998
Query 1012 TTCTTCTGCTTCGAAGAGGACGCTTGTGCCTGCGTTGAATATGAGGTTGTGGTATGCTCC 1071
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 999 TTCTTCTGCTTCGAAGAGGACGCTTGTGCCTGCATTGAATATGAGGTTGTGGTATGCTCC 1058
Query 1072 GGAATTGGATTTACCTGATGGGACGGTGTTGAAAGGTGCGACATTGGTGGCTATTAGGCC 1131
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GCAATTGGATTTACCTGATGGCACGGTGTTGAAAGGTGCGACATTGGTGGCTATTAGGCC 1118
Query 1132 GAGTGAGTCTAAGAAGGAAGTTTGTGATGCTTCTTGGTTGTCTGATGCTTTTGAGGAACC 1191
||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1119 GAGTGAGTCGAAGAAAGAAGTTTGTGATGCTTCTTGGTTGTCGGATGCATTTGAGGAACC 1178
Query 1192 GTTTGGGACTGTGGCGAAGATGTTGATCAAGAGGAGGACTTATTGTTTGGAGATGAACTC 1251
|| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1179 GTATGGGACTGCGGCGAAGATGTTGATCAAGAGGAGGACTTATTGTCTGGAGATGAACTC 1238
Query 1252 GTTCTGATTTCGCATTATGACCGGTTTCAGACATTTTGCAGATGGTGGGAGCAAACAAAT 1311
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 GTTCTGATTTCGCAGTACGACCGGTTTCAGACATTTTGCAGATGGTGGGAGCAAACAAAT 1298
Query 1312 CCACATATGTTGGAGAATGAAGGAAAGAGAACAGAGAGTTCACAAATGTCCTGAAGCCAA 1371
||||||||||||||||||| ||||||| || ||||||| ||||| |||||||||||||||
Sbjct 1299 CCACATATGTTGGAGAATGGAGGAAAGGGATCAGAGAGATCACATATGTCCTGAAGCCAA 1358
Query 1372 AAACCGCAAATCTCTCGACtttttttGAGACATACTGCTTCGCCAGTCATGAGGCCTGCG 1431
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1359 AAACCGCAAATCTCTCGACTTTTT--GACACATACTGCTTCGCCAGTCATGAGGAGTGCG 1416
Query 1432 TCGAATGAATCTGCAGGCATGGAGGATGCCGAAGGGAGGTTCTCTGAAACCGAAGAAGAA 1491
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1417 TCGAAT----CTGCAGGCATGGAGGATGCCTAAGGGAGGTTCTCTGAAACCGAAGAAGAA 1472
Query 1492 CGCCATTGTACATACACTCTTGTAAAAGAAGTCTGCGAGTGAGGAAGAACATGTGTGT-G 1550
| |||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |
Sbjct 1473 CACCATTGTACATACACTCTTGTAAAAGAAGTCTGCGAATGAGCAAGAGTATGTGTGTTG 1532
Query 1551 ATCTGTGTTAAAAAGAGGCACATATGAAGGATGTGAATCGTCGTAACACGTAAGGGATTA 1610
||| |||| ||||||| | ||||| | ||||| |||||||||||||| |||||||||||
Sbjct 1533 -TCTTTGTTTAAAAGAGACGCATATCA-GGATGGGAATCGTCGTAACATGTAAGGGATTA 1590
Query 1611 TGTTACAAAAGAGTCTGTAAT-AATATGTATAAGCTTTATTTCGACACTTTGATGTTCTG 1669
||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct 1591 TGTTACAAAAGAGTCTGTAATGAATATTTTTAAGCTTTACTTCGACACTTTGATGTTCTG 1650
Query 1670 TT-CTTGATACTTGGATACTCTGTTCTTGAAGCTAACTAC 1708
|| |||||||||||||||||||||||||||||||||||||
Sbjct 1651 TTTCTTGATACTTGGATACTCTGTTCTTGAAGCTAACTAC 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65172409195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5