BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30210.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473241 jgi|Araly1|473241|fgenesh2_kg.1__3195__AT1G30210.2 2054 0.0
> Ahg473241 jgi|Araly1|473241|fgenesh2_kg.1__3195__AT1G30210.2
Length=1534
Score = 2054 bits (1112), Expect = 0.0
Identities = 1403/1534 (91%), Gaps = 57/1534 (4%)
Strand=Plus/Plus
Query 158 GATCTGTGGATCTTAACACTTCTCTAATGCTTATAATGACGAGATCTAAGCATGAGAAGG 217
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 39 GATCTGTGGATCTTAACA---CTCTAATGCTTATAATGACGAGATCTAAGCATGAAAAGG 95
Query 218 AAGAGATAAGAAGCTCATGACAAGAATCTGAAGAAAATTAAATTTGTTTTTCACTTATCG 277
|||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 96 AAGAGAGAAGAATCTCATGACAAGAATCTGAAGAAAATTAAATTTG-TTTTC-TTTATCG 153
Query 278 CCGCCATTGTTGTTCTACACTGAGCTTAGACAGTTGACACCTGTAATCCAAAATTCAAAA 337
|||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
Sbjct 154 CCGCCATTGTTGTTCTACGGTGAGCTTGGACAGTTGACACCTGTAATCC-AAATT--TGA 210
Query 338 GTTTATCACTGCAA-C--ATAC-TCAGGCTTTTTACTTAATTATCATAGCTCTGATAAAG 393
| | || ||| || | | | ||||||||||| | ||||||||||||||||||||
Sbjct 211 G-TAATGACTTTAATCTTCTTCTTCAGGCTTTTT-C---CTTATCATAGCTCTGATAAAG 265
Query 394 TATGAGAGTAGCGTTACAATGGAGGTTGACGAAGACATTGAGTTACAAAAACATCAAGAA 453
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 266 TATGAGAGTAGTGTTTCAATGGAGGTTGACGAAGACATTGAGTTACAAAAGCATCAAG-- 323
Query 454 CAACAAAGCAGAAAGCTACAAAGATTCTCAGAGGACAACACTGG-A--CTAATGAGGAAT 510
||||||||||||||||||||||| ||||||| |||||| |||| | |||||||||||
Sbjct 324 -AACAAAGCAGAAAGCTACAAAGACTCTCAGACGACAACTCTGGAATTATAATGAGGAAT 382
Query 511 TGGAACAATCCATCGTCTCGTATCATTAGGGTTTCACGAGCTTCTGGTGGCAAAGATAGA 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 383 TGGAACAATCCATCGTCTCGTATCATTAGGGTTTCACGAGCTTCTGGTGGCAAAGATCGA 442
Query 571 CATAGCAAAGTGTTAACATCAAAAGGTTTAAGAGATCGAAGAATACGTCTCTCAGTTGCT 630
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 CATAGCAAAGTCTTAACTTCAAAAGGTTTAAGAGATCGAAGAATACGTCTCTCAGTTGCT 502
Query 631 ACAGCAATCCAGTTCTATGATCTTCAAGATCGTCTTGGATTTGATCAGCCAAGTAAAGCT 690
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 503 ACAGCAATCCAGTTCTATGATCTTCAAGATCGTCTTGGATTTGATCAACCAAGTAAAGCT 562
Query 691 GTTGAATGGTTAATCAATGCAGCTTCTGATTCAATCACTGATCTTCCTTTGCTTAACACA 750
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 563 GTTGAATGGTTAATCAATGCAGCGTCTGATTCAATCACTGATCTTCCTTCGATTAACACA 622
Query 751 AATTTTGATCATCTTGATCAGAATCAGAATCAGACCAAATCTGCTTGTAGTAGTGGAACA 810
||||||||| |||||||| |||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 623 AATTTTGATTATCTTGATGAGAACCAGAACCAGACCAAATCTGCTGGTAGTAGTGGAACA 682
Query 811 TCTGAGAGTTCGCTGTTGTCGTTATCaagaacagagattcgtgggaaagcaagagagaga 870
|||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 683 TCTGAGAGTTCGTTGTTGTCTTTATCAAGGACAGAGATTCGTGGGAAAGCAAGAGAGAGA 742
Query 871 gctagagaaagaacagctaaagacagagataaagaTTTGCAGAATGCTCATAGCTCATTC 930
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 743 GCTAGAGAAAGAACAGCTAAAGAAAGAGATAAAGATTTGCAAAATGCTCAAAGCTCATTC 802
Query 931 ACTCAGCTTCTCACTGGTGGTTTTGACCAACAACCGAGTAACCGGAATTGGACCGGTGGT 990
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ACTCAGCTTCTCACCGGTGGTTTTGACCAACAACCGAGTAACCGGAATTGGACCGGTGGT 862
Query 991 TCTGATTGCTTT-AACCCGGTTCAGCTGCAAATACCAAACTCTTCCTCTCAAGAGCCAAT 1049
|||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 863 TCTGATTG-TTTCAACCCGGTTCAGCTGCAGATACCAAACTCATCCTCTCAAGAACCAAT 921
Query 1050 GAATCA-------C-CC-ATTCTCCTTTGTACCTGATTACAACTTTGGAATCTCTTCTTC 1100
|||||| | || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 922 GAATCAGAATAATCACCCATTCTCCTTTGTACCTGATTACAACTTTGGAATCTCTTCCTC 981
Query 1101 TTCTTCTGCCATTAATGGTGGTTACAGTAGTAGGGGGACCCTTCAGTCCAATTCACAATC 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TTCTTCTGCCATTAATGGTGGTTACAGTAGTAGGGGGACCCTTCAGTCCAATTCACAATC 1041
Query 1161 TCTCTTTCTGAATAACAACAACAACATTACTCAAAGGTCATCGATTTCTTCGTCTTCTTC 1220
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1042 TCTCTTTCTCAA---CAACAACAACATTACTCAAAGGTCATCGATTTCTTCATCTTCTTC 1098
Query 1221 TTCCTCTTCTCCAATGGATAGTCAAAGCATTTCCTTTTTCATGGCTACACCTCCACCTCT 1280
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1099 TTCCTCTTCTCCAATGGATAGTCAAAGCATTTCCTTTTTCATGGCTACACCTCCGCCTCT 1158
Query 1281 TGACCACCATAACCACCAGCTTCCGGAGACTTTTGATGGTCGGCTATATCTTTATTACGG 1340
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1159 TGACCACCATAACCACCAGCTTCCGGAGACTTTTGATGGCCGGTTATATCTTTATTACGG 1218
Query 1341 CGAAGGAAACCGGAGCTCTGATGACAAGGCAAAGGAAAGGAGATAGTAAAAACAAAATGC 1400
|||||||||||||| ||| ||||| |||| |||||| ||||||||| ||| |||||||
Sbjct 1219 CGAAGGAAACCGGAACTCCGATGATAAGGGAAAGGATAGGAGATAGGAAA--CAAAATGG 1276
Query 1401 TTCCTTTCATCTCTCGCCAATCTTGG--AGTGGAAGTGTAATTTGTGGGAAGACGATGTT 1458
|||||||||||||||||||||||||| || |||||||||| | | ||||||||||||||
Sbjct 1277 TTCCTTTCATCTCTCGCCAATCTTGGTTAGAGGAAGTGTAAGT-GAGGGAAGACGATGTT 1335
Query 1459 TGTGCAGCCCTGAGCATGTATATGAATCCTCCATTGCAATCATAAGCCAGGTTGATTGTA 1518
|| |||||||||||| ||| || |||||||||| |||||||||||| | ||||||| |
Sbjct 1336 TGCATAGCCCTGAGCATATATTTGGATCCTCCATTTCAATCATAAGCCTGATTGATTGCA 1395
Query 1519 TGTTCAGACCGCGAGGAATTGTTTTTGTTTGATGAGAAACATGTGTTATGTAATGAATCA 1578
||||||||||||||||| |||||||||||| | | |||||||||||||
Sbjct 1396 TGTTCAGACCGCGAGGAGTTGTTTTTGTTT--T--------T-----ATGTAATGAATCA 1440
Query 1579 TATATATGTCTCTATATGTGTTCATGTTCATTGTCATAAACTTTGTCCGAAACTCGGACC 1638
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1441 TATATATGTCTCTATGTGTGTTCATGTTCATTGTCAAAAACTTTGTCCGAAACTCGGACC 1500
Query 1639 AATGTTTTCAGGTCATCCTCATTCTGTTGGCTGC 1672
||||||||||||||||||||||||||||||||||
Sbjct 1501 AATGTTTTCAGGTCATCCTCATTCTGTTGGCTGC 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5