BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30230.2
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473244 jgi|Araly1|473244|fgenesh2_kg.1__3198__AT1G30230.2 1351 0.0
Ahg319762 jgi|Araly1|319762|fgenesh1_pm.C_scaffold_3002778 998 0.0
> Ahg473244 jgi|Araly1|473244|fgenesh2_kg.1__3198__AT1G30230.2
Length=840
Score = 1351 bits (731), Expect = 0.0
Identities = 806/841 (96%), Gaps = 9/841 (1%)
Strand=Plus/Plus
Query 56 TCAGTGAAAAAGGTTCGAGCTTCGGAAACT-ATGGCAGCATTCCCTAACCTTAACTCTGA 114
||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||
Sbjct 6 TCAGTGAAAAAGGTTCGAGCTTCAGAAA-TAATGGCAGCATTCCCAAACCTTAACTCTGA 64
Query 115 TGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGATACCA 174
| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 65 TTCTGGATTGAAGAAGCTCGATGAGCATCTTCTCACTCGCAGTTACATCACTGGGTACCA 124
Query 175 GGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTA 234
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 125 GGCTTCAAAGGACGATATCACTGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTA 184
Query 235 TGTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCTGGTGTCTC 294
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 185 TGTGAACGCATCTCGTTGGTACAACCACATTGATGCCCTCTTGAGGATCTCTGGTGTCTC 244
Query 295 TGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATCACTGAGGAGGCTGTTGC 354
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 245 TGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCCCCTATCACTGAGGAGGCTGTTGC 304
Query 355 TACTCCCCCTGCAGCTGATTCTAAGGATGCTGCGGCTGATGAAGAAGATGATGATGATGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TACTCCCCCTGCAGCTGATTCTAAGGATGCTGCGGCTGATGAAGAAGATGATGATGATGT 364
Query 415 TGACCTTTTCGGAGAGGAGACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTC 474
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TGACCTTTTCGGAGAGGAAACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTC 424
Query 475 TGTCAAGGCATCTACAAAGAAGAAGGAATCTGGAAAGTCCTCAGTTTTGATTGATATCAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TGTCAAGGCATCTACAAAGAAGAAGGAATCTGGAAAGTCCTCAGTTTTGATTGATATCAA 484
Query 535 ACCGTGGGATGATGAGACTGACATGAAGAAGCTT-GAGGAAGCTGTGA-AGTCCATTCAG 592
|| ||||||||||||||||||||||||||| || |||||||| |||| | |||||||||
Sbjct 485 GCCATGGGATGATGAGACTGACATGAAGAAG-TTAGAGGAAGCAGTGAGA-TCCATTCAG 542
Query 593 ATGGAAGGTTTGTTTTGGGGAGCATCAAAGCTTGTCCCAGTTGGTTATGGTATCAAGAAG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ATGGAAGGTTTGTTTTGGGGAGCATCAAAGCTTGTCCCAGTTGGTTATGGTATCAAGAAG 602
Query 653 TTGCAGATTTTGTGCACCATTGTTGACGACCTTGTCTCTATTGACACCATGATCGAAGAG 712
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 603 TTGCAGATTATGTGCACCATTGTTGATGACCTTGTCTCTATTGACACCATGATCGAAGAG 662
Query 713 CAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAAC 772
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 663 CAACTCACAGTTGAACCAATCAATGAATACGTCCAGAGCTGTGACATTGTTGCCTTCAAC 722
Query 773 AAGATATGTAAGATGGAGAAAGCTTCAAGGAATGTCTGTGTTCATGTGGTCTGGTTCTTC 832
|||||||||| ||||||||| |||||||||| ||||||||||| ||| ||||||||||||
Sbjct 723 AAGATATGTAGGATGGAGAATGCTTCAAGGATTGTCTGTGTTCTTGTTGTCTGGTTCTTC 782
Query 833 TTCTTCTTCTATATTCAGTTTCCCAAGTTTTTGTAGACTGTTGTTTTGACTCTGTTATGG 892
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 783 TTCTTCT---ATATTCAGTTTCCCAAGTTTTTGTAGACTGTTGTTTTGACTCTGCTATGG 839
Query 893 C 893
|
Sbjct 840 C 840
> Ahg319762 jgi|Araly1|319762|fgenesh1_pm.C_scaffold_3002778
Length=759
Score = 998 bits (540), Expect = 0.0
Identities = 647/700 (92%), Gaps = 2/700 (0%)
Strand=Plus/Plus
Query 86 ATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTT 145
|||||||||||||| ||||| ||||||| | |||| |||||||||||||| |||||||||
Sbjct 1 ATGGCAGCATTCCCCAACCTCAACTCTGCTTCTGGTTTGAAGAAGCTCGATGAGCATCTT 60
Query 146 CTCACTCGCAGTTACATTACTGGATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCA 205
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| ||
Sbjct 61 CTCACTCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGATATCACTGTCTTTACA 120
Query 206 GCTCTTGCAAAGCCCCCAACTTCACAGTATGTGAACGCTTCTCGTTGGTACAATCACATT 265
||||| ||||||||||||||||| |||||||||| | ||||||||||| ||| |||||
Sbjct 121 TCTCTTTCAAAGCCCCCAACTTCAGAGTATGTGAATGTTTCTCGTTGGTTCAACCACATC 180
Query 266 GATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGA 325
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGTGGTGTCATTGTTGAGGGA 240
Query 326 TCAGCTCCTATCACTGAGGAGGCTGTTGCTACTCCCCCTGCAGCTGATTCTAAGGATGCT 385
||| | || ||||| || |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 241 TCATCACCGATCACAGAAGAGGCTGTTGCTTCTCCCCCTGCAGCTGATTCTAAGGATACT 300
Query 386 GCGGCTGATGAAGAAGATGATGATGATGTTGACCTTTTCGGAGAGGAGACCGAAGAGGAA 445
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 301 GCGGCTGATGAAGATGATGATGATGATGTTGACCTTTTCGGGGAGGAGACTGAAGAAGAA 360
Query 446 AAGAAAGCTGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATCT 505
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 361 AAGAAAGCTGCTGAAGAGAGAGCTGCTTCTGTGAAGGCATCTACAAAGAAGAAGGAATCC 420
Query 506 GGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGACATGAAGAAG 565
|||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 421 GGAAAGTCATCAGTTTTAATTGATATCAAGCCGTGGGATGATGAGACCGACATGAAGAAG 480
Query 566 CTTGAGGAAGCTGTGAAG-TCCATTCAGATGGAAGGTTTGTTTTGGGGAGCATCAAAGCT 624
|| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CTAGAGGAAGCTGT-AAGATCCATTCAGATGGAAGGATTGTTTTGGGGAGCATCAAAGCT 539
Query 625 TGTCCCAGTTGGTTATGGTATCAAGAAGTTGCAGATTTTGTGCACCATTGTTGACGACCT 684
||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||
Sbjct 540 TGTACCAGTTGGTTACGGTATCAAGAAATTGCAGATCATGTGCACCATTGTTGATGACCT 599
Query 685 TGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGT 744
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 600 TGTGTCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCAATCAATGAATTTGT 659
Query 745 CCAGAGCTGTGACATTGTTGCCTTCAACAAGATATGTAAG 784
|||||| |||||||||||||||||||||||||||||||||
Sbjct 660 CCAGAGTTGTGACATTGTTGCCTTCAACAAGATATGTAAG 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5