BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30250.1

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922079 jgi|Araly1|922079|scaffold_103360.1                        412    1e-114


> Ahg922079 jgi|Araly1|922079|scaffold_103360.1
Length=292

 Score =  412 bits (223),  Expect = 1e-114
 Identities = 265/284 (93%), Gaps = 7/284 (2%)
 Strand=Plus/Plus

Query  1    TTTGATAAAAATGGTTGATATCC-AAAGCACCCGTTTCGTCTACCGACCAGACCAACAGG  59
            |||||||||||||||||||| || ||| ||||| |||||||| ||||| |||||| ||||
Sbjct  11   TTTGATAAAAATGGTTGATACCCGAAA-CACCCTTTTCGTCTTCCGACAAGACCAGCAGG  69

Query  60   CTCTCT-CACCTCAACCACGGACTCCATTCTCAGCCGTGACTGCGCACCGTGCTACAGCC  118
            |||| | |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  70   CTCT-TGCACCTCAACCTCGGACTCCATTCTCAGCCGTGACTGCGCACCGTGCCACAGCC  128

Query  119  ATACGACAGTGCCGCCTCATGATCTCTGTCACAACCCTCGAAATGATCCTTGAGGAAGAG  178
            ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  129  ATACGACGGTGCCGCCTCATGATCTCTGTCACGACCCTCGAAATGATCCTTGAGGAAGAG  188

Query  179  ATAACACCAGAAGAAGGTCATCCAAGCATTGCCCCTGCGATGGATTCTCTTGCGGTG-T-  236
            ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| | 
Sbjct  189  ATAACACCAGAAGAAGGTCATCCAAACATTACCCCTGCGATAGATTCTCTTGCGGTGGTG  248

Query  237  TT-CCGGTGACCTCTTGTTTCTAGGACATCAAGAAACAAGTCTC  279
            || |||||||||||||||||||||||||||||||||||||||||
Sbjct  249  TTTCCGGTGACCTCTTGTTTCTAGGACATCAAGAAACAAGTCTC  292



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19115950089


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5