BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30260.1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922080 jgi|Araly1|922080|scaffold_103361.1                        429    1e-119


> Ahg922080 jgi|Araly1|922080|scaffold_103361.1
Length=325

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 302/334 (90%), Gaps = 12/334 (4%)
 Strand=Plus/Plus

Query  88   AATCCCTAAATTTTCAAGATCATGGCGACCTCAAGACTTGCAAGATTCATAACGGAAGTT  147
            |||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct  1    AATCCCTAAA-TTTCAAGATCATGGCGAGCGCACGACTTGCAAGATTCATAACGGAAGTT  59

Query  148  GCGCCACCGCAATTTGTCACGGTGATGCGGCGAAGAACGGCGAAGGTACTCGACACGATC  207
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  60   GCGCCACCGCAATTTGTCACGGTGATGCGGAGAAGAACGGCGAAGGTACTCGACACGATC  119

Query  208  AAGGAGGAAGAAAGAGAAGTTGGCACTGACTCTATATTTCCTTCTTCTTTCAATTCGAAG  267
            ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct  120  AAGGAGGAAGAAAGAGAAGTTGGCACTGACTCTATATTTTCATCTTCTTTAAATTCGAAG  179

Query  268  AAGATCTCTTCACCGTTTACTTCTCCTTATTCATCCTCTGTTTCTTCAGCTTCAGCTTCA  327
            || ||||||||||||||||||||| ||||| | |||||||| |||||   |||   |   
Sbjct  180  AACATCTCTTCACCGTTTACTTCTACTTATCCCTCCTCTGTCTCTTC---TTC---T---  230

Query  328  GCTTCATGCACTTCCGGTCTAAATAAA-TTCCCGGTTACAGAGAACCGGGGCTCCTTTCC  386
            |||||||||| ||| |||||||| ||| |||||||||| |||||||||||| || ||| |
Sbjct  231  GCTTCATGCAGTTCTGGTCTAAA-AAACTTCCCGGTTATAGAGAACCGGGGATCTTTTTC  289

Query  387  GGTTTTCAAGAACTAAACCAATTTTCAGATGTAA  420
            |||||||||||||| ||| |||||||||||||||
Sbjct  290  GGTTTTCAAGAACTGAACTAATTTTCAGATGTAA  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24894264801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5