BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30300.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473254 jgi|Araly1|473254|fgenesh2_kg.1__3208__AT1G30300.1 1965 0.0
> Ahg473254 jgi|Araly1|473254|fgenesh2_kg.1__3208__AT1G30300.1
Length=1241
Score = 1965 bits (1064), Expect = 0.0
Identities = 1193/1252 (95%), Gaps = 22/1252 (2%)
Strand=Plus/Plus
Query 22 TACGTTCGACTCCAGATTCCTCCTTTGCCGGAATATTCCATACGTAAGAGATATTGAAAT 81
||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1 TACGTTCGACTTTAGATTCCTCCTTCGCCGGAATATTCCATACGTAAGAGATACTGAAAT 60
Query 82 CGCCGATGATGGAAAGTTCGATTCCGTCTGAGAACGGCTCCGTTACCTCTGATCGTGATA 141
|||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 61 CGCCGATGATGGAAAGTTTGATTCCGGCTGAGAACGGCTTTGTTACCTCTGATCGTGATA 120
Query 142 GATCGGCTCTAATATTCCTAGGAACTGGATGTTCAAGCGCGGTACCTAACGCAATGTGCT 201
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GATCGGCACTAATATTCCTCGGAACTGGATGTTCGAGCGCGGTACCTAACGCAATGTGCT 180
Query 202 TGATCCAGCGATCTGATAATCCCTGCTATGTTTGTTCCCAGTCTCTTTCAATCCCGCCTG 261
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TGATCCAGCGATCTGATAGTCCCTGCTATGTTTGTTCCCAGTCTCTTTCGATCCCGCCTG 240
Query 262 AGAAAAATCCTAATTACAGGGGGAATACTTCACTGCTCATTGATTATTGCCAAAGTGATG 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGAAAAATCCTAATTACAGGGGGAATACTTCACTGCTCATTGATTATTGCCAAATTGATG 300
Query 322 GCAAACATAAATACATTCAAATCGATGTTGGCAAGACTTTCAGAGAACAAGTCCTTCGTT 381
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 GCAAACATAAATACATTCAAATCGATGTTGGCAAGACTTTCAGGGAACAAGTCCTTCGTT 360
Query 382 GGTTTACTCTTCACAAGATTCCTCAAGTTGATTCTATAATTTTGACTCATGAACATGCTG 441
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GGTTTACTCTTCACAAGATTCCTCAAGTTGATTCTATCATTTTGACTCATGAACATGCTG 420
Query 442 ATGCAGTACTTGGCCTGGATGATATACGTTCAGTGCAACCATTTAGTCCTACTAATGATA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGCAGTACTTGGCCTGGATGATATACGTTCAGTGCAACCATTTAGTCCTACTAATGATA 480
Query 502 TTGATCCTACTCCAATTTTTGTAAGCCAATACGCTATGGAAAGCCTTGCTGTGAAGTTCC 561
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 TTGATCCTACTCCAATTTTTGTAAGCCAATACGCTATGGACAGCCTTGCTGTGAAGTTCC 540
Query 562 CGTATTTGGTTCAGAAGAAACTTAAAGAAGGCCAAGAAGTTAGGCGAGTAGCACAGCTAG 621
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 CGTATTTGGTTCAGAAGAAACTTAAAGAAGGCCAAGAAGTTAGGCGAGTAGCACAGCTGG 600
Query 622 ATTGGAGAGTAATTGAAGAAGATTGTGAGAAGCCATTTGTAGCTTCAGGTTTATCATTCA 681
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTGGAGAATAATTGAAGAAGATTGTGAGAAGCCATTTGTAGCTTCAGGTTTATCATTCA 660
Query 682 CGCCACTTCCAGTGATGCATGGAGAAGACTATGTATGTCTTGGCTTCCTTTTTGGTGAAA 741
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 661 CGCCACTTCCAGTGATGCATGGAGAAGACTATGTATGTCTTGGTTTCCTTTTTGGTGAAA 720
Query 742 AATCAAGAGTGGCTTATATATCCGATGTTTCACGGTTTCCTCCAAACACCGAGTATGCTA 801
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 AATCAAGAGTGGCGTATATATCCGATGTATCACGGTTTCCTCCAAACACCGAGTATGCTA 780
Query 802 TATCAAAATCTGGTGGTGGACAATTGGATCTCCTTATTTTGGATACATTATATAAGACAG 861
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 781 TATCAAAATCTGGTGGTGGACAATTGGATCTCCTTATCTTGGATACATTGTATAAGACAG 840
Query 862 GATCCCACAACACTCACTTATGTTTCCCGCAGACACTAGACACAATCAAAAGACTGAGTC 921
|||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GATCTCACAACACCCACTTATGTTTCCCGCAGACATTAGACACAATCAAAAGACTGAGTC 900
Query 922 CAAAAAGGGCTCTTCTGATTGGAATGACTCACGAGTTTGATCATCACAAGGACAACGAGT 981
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 901 CAAAAAGGGCTCTTCTAATCGGAATGACTCACGAGTTTGAGCATCACAAGGACAACGAGT 960
Query 982 TTCTTGAAGAATGGTCTAAAAGGGAAGGGATTTCAGTAAAACTCGCTCATGATGGCTTGA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCTTGAAGAATGGTCTAAAAGGGAAGGGATTTCAGTAAAACTCGCTCATGATGGCTTGA 1020
Query 1042 GAGTCCCAATAGACCTATGAAGAGGTGAAAATGATTACTTGGCTTTCTCATTAACGAAAC 1101
||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1021 GAGTCCCAATAGACCTATGAAGAGGTGAAAATGATTACTTG--------A--AAGGAAAA 1070
Query 1102 TAAGATCATTGCCTTATTTTTTATCTGACTTCTG-A-TTC-----ACT-CAATGAGGAAG 1153
||| ||||||||||||||||||||| |||||||| | ||| | | |||||| || |
Sbjct 1071 TAAAATCATTGCCTTATTTTTTATC-GACTTCTGGAGTTCTGGTTAATTCAATGATGATG 1129
Query 1154 CTTGTAGGTCTCCTTGTGTTA---TAGAGAGATAGAGAGCGGAGTGAAACGGTTTTGTTC 1210
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1130 CTTGTAGGTCTTCTTGTGTTAAGATAGAGAGATAGAGAGCGGAGTGAAACGGTTTTGTTC 1189
Query 1211 AAGATGCATAATGCTCGCATGGCTTCATATCAACATTATCACTAATGTTTTT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AAGATGCATAATGCTCGCATGGCTTCATATCAACATTATCACTAATGTTTTT 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5