BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30320.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473255 jgi|Araly1|473255|fgenesh2_kg.1__3209__AT1G30320.1 1914 0.0
> Ahg473255 jgi|Araly1|473255|fgenesh2_kg.1__3209__AT1G30320.1
Length=1721
Score = 1914 bits (1036), Expect = 0.0
Identities = 1218/1302 (94%), Gaps = 28/1302 (2%)
Strand=Plus/Plus
Query 457 CAGCAATTTAGGAAAGGGGACTTGAATATGGCTTCTCCTCATATAATGAGACCTCAAGAA 516
||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 424 CAGCAGTTTAGAAAAGGGGACTTGAATATGGCTCCTCATCATATAATGAGACCTCAAGAA 483
Query 517 GATGAAAACCTTGATTATGACAGTAACGCTAGCTCTTCAAGCTTCGAGTTTCACCGAGCT 576
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GATGAAAATCTTGATTATGACAGTAACGCTAGCTCTTCAAGCTTCGAGTTTCACCGAGCT 543
Query 577 CGTGGTGAGCGTTCGAATCAGAATCATGGCTCAAGAGGATATCCTTCAAGACAAATGCCA 636
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 544 CGTGGTGAGCGTTCGAATCAGAATCATGGATCAAGAGGATATCCTTCAAGACAAATGCCA 603
Query 637 TCTAAATGGAATGATGCTGAGAAGTGGATAATGAGCAGACAGAACATGGTGATGAGGAAG 696
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCCAAATGGAATGATGCTGAGAAGTGGATAATGAGCAGACAGAACATGGTGATGAGGAAG 663
Query 697 AACGGTCAAGGGAACCGAATACCTGTGAGAATTGTGCCTGATAATGCAGGTTACGAGCAT 756
|||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||
Sbjct 664 AACGGTCAAGGGAACCGAATGCCCGTGAGAGTTGTGCCTGATAATGCAGGTTATGAGCAT 723
Query 757 AACAAATCTAGGATGGATCTGTGCCAATCCTCACAAGTTGATGGGTTTGAGAAGTTCCCT 816
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 724 AACAAATCTAGGATGGATCTGTGCCAATCCTCACAAGTTGATGGGTTCGAGAAGTTCCCT 783
Query 817 AATGTTGTTCCCTCGGCGCCACATCCTATTCTAACTCAAGAGTATGGAGGAGACTCGTTG 876
||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 784 AATTTTGTTCCCTCGGCGCCACATCCAATTCTAACTCAAGAGTATGGAGGAAACTCGTTG 843
Query 877 ATTGACCAATCCACACAAAGCAATGATCTTGCGGATTC-ATCACATGATCATACAACAGG 935
|| || ||||||||||||||||||||||||| || ||| |||||| ||| || |||||||
Sbjct 844 ATCGATCAATCCACACAAAGCAATGATCTTGTGG-TTCCATCACAAGATAATTCAACAGG 902
Query 936 TGGTCCTGCGATTCGTTCGGTATGTATGAGAGATATGGGAACCGAAATGACACCTATACC 995
||||| |||||||||||| || ||||||||||||||||||||||| ||||| || |||||
Sbjct 903 TGGTCATGCGATTCGTTCTGTTTGTATGAGAGATATGGGAACCGATATGACGCCAATACC 962
Query 996 GAGTCAAGAACCTTCAAGATCTGTGACACCAGTTGGTGCAACAACTCCTCTTCGTAGCCC 1055
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 963 GAGTCAAGAACCTTCAAGATCGGTCACACCAGTTGGTGCAACAACTCCACTTCGTAGCCC 1022
Query 1056 GACTTCATCTCTCCCTTCTACTCCTAGAGGTGGCCAACCAGAGGAATCTTCT--AT-GT- 1111
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 1023 GACTTCATCTCTCCCTTCTACTCCTAGAGGTGGCCAACAAGAGGAATCTTCTTTATCGCA 1082
Query 1112 ---C--G---AAAAACACAAGAAGAGAACTATCTGAGGAGGAAGAGAAAGCGAAGACGCG 1163
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAACCAGCCGAAAAACACAAGAAGAGAACTATCTGAGGAGGAAGAGAAAGCGAAGACGCG 1142
Query 1164 AAGAGAGATTGTAGCTCTTGGAGTTCAGCTAGGGAAGATGAACATCGCCGCTTGGGCAAG 1223
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AAGAGAGATTGTAGCTCTCGGAGTTCAGCTAGGGAAGATGAACATCGCCGCTTGGGCAAG 1202
Query 1224 TAAAGAAGAAGAGGAGAACAAGAAAAACAATGGAGATGCAGAGGAGGCACAGAAGATTGA 1283
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1203 TAAAGAAGAAGCGGAGAACAAGAACAACAATGGAGATGCAGAGGAGGCACAGAAGATTGA 1262
Query 1284 GTTTGAAAAACGAGCGACTGCATGGGAAGAAGCAGAGAAATCCAAACATAATGCGAGGTA 1343
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1263 GTTTGAAAAACGAGCGACTGCATGGGAAGAAGCAGAGAAATCGAAACATAATGCAAGGTA 1322
Query 1344 TAAGCGTGAGGAAATCAGAATCCAAGCTTGGGAAAGTCAGGAGAAAGCCAAACTCGAAGC 1403
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1323 TAAGCGTGAGGAAATCAGAATCCAAGCTTGGGAAAGTCAGGAGAAAGCGAAACTCGAAGC 1382
Query 1404 AGAAATGCGACG--T--A--TA-G--AGGCTAAAGTTGAGCAGATGAAAGCTGAAGCTGA 1454
|||||||||||| | | || | |||||||||||||||| |||||||||||||||||
Sbjct 1383 AGAAATGCGACGAATCGAGGTATGTGAGGCTAAAGTTGAGCAAATGAAAGCTGAAGCTGA 1442
Query 1455 AGCAAAGATAATGAAGAAAATTGCGTTGGCTAAGCAAAGGTCAGAAGAGAAACGGGCTTT 1514
|||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1443 AGCAAAGATAGTGAAGAAAATTGCGATGGCTAAGCAAAGTTCAGAAGAGAAACGGGCTTT 1502
Query 1515 GGCGGAAGCTAGAAAAACCCGTGATGCTGAGAAGGCAGTGGCTGAAGCCCAATATATTCG 1574
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1503 AGCGGAAGCTAGAAAAATCCGTGATGCGGAGAAGGCAGTGGCTGAAGCCCAATATATCCG 1562
Query 1575 GGAAACTGGTAGAATACCGGCATCAAGTTACAAGATATGTTGTGGTTGGTTCTCATGAGG 1634
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1563 GGAAACTGGTCGAATACCGGCATCAAGCTACAAGATATGTTGTGGTTGGTTCTCATGAGG 1622
Query 1635 CA-TTGGATTGAGTTTTTGGTCTTCTGAGTAAACCATGATTGGATTCTCAAAGCCCCTTT 1693
|| ||| |||||||||| ||| || ||||||||||||| ||||||| ||||| |||||||
Sbjct 1623 CACTTG-ATTGAGTTTTCGGTGTT-TGAGTAAACCATGGTTGGATTATCAAA-CCCCTTT 1679
Query 1694 GT-GTAATATAGAAATGGAATGCATATTATGTTGCATAGACT 1734
| |||||||| ||||| |||||||| |||||||||||||||
Sbjct 1680 TTTGTAATATATAAATGAAATGCATAGTATGTTGCATAGACT 1721
Score = 573 bits (310), Expect = 1e-162
Identities = 393/431 (91%), Gaps = 14/431 (3%)
Strand=Plus/Plus
Query 2 CATTTTGTCTCTCTTCTTC-T-TT-TTCAG-AGACAGAGGAATTAGAGAAAGCAAGCTTT 57
|||| |||||||||||||| | || ||||| ||||||||||||||||||||| ||||
Sbjct 1 CATTCTGTCTCTCTTCTTCTTCTTCTTCAGAAGACAGAGGAATTAGAGAAAGAAAGC--- 57
Query 58 GTGTCTGTAAATATAAAGAGATAGAG-AAAAGATTTGGCATTGGCAATGGATTACGAGAG 116
| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 58 ---T-TGTAAATATACAGAGATAGAGAAAAAGATTTGGCATTGGCAATGGATTACGAGAG 113
Query 117 GATACAGAAAGTGCAGAAGAGTATAATCTCGCCAACGAAGCTGAGAATGAAGCTAATGGG 176
|||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 114 GATAGAGAAAGTGCAGAAGAGCATAATCTCGCCCACGAAGCTGCGAATGAAGCTAATGGG 173
Query 177 TCCACTCAATAACATGAAGCGAGAAGGATCCAAGTCCAACAGTAACTCTTCAAGAACATC 236
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCCACTCAATAACATGAAGAGAGAAGGATCCAAGTCCAACAGTAACTCTTCAAGAACATC 233
Query 237 TCCTTCTCGTCTTCAGATTCCAGATGACTCCGAGTTCTCCAAGAACAGCTTGTTAGCTTC 296
||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 234 TCCTTCTCGTCTTCAGATTTCAGACGACTCTGAGTTCTCCAAGAACAGCTTGTTAGCTTC 293
Query 297 TAACTCTTATTCAGACGACGATGTGGCAGCTACAACTACGGATATAGAAGTAGCTAAGCT 356
||| |||| |||||||||||||||||| ||| |||| |||||||||||||||||||| ||
Sbjct 294 TAAATCTTTTTCAGACGACGATGTGGCGGCTTCAACAACGGATATAGAAGTAGCTAAACT 353
Query 357 GCCAAATGAGCCGGTTTTGTATCC-AACCGAGAACGATAATCAAGGCTCAAAAGATCGGT 415
||||||||||||||||||| | || |||||||| ||||||||||| ||| | | |||| |
Sbjct 354 GCCAAATGAGCCGGTTTTGGA-CCTAACCGAGAGCGATAATCAAGCCTCGATACATCGAT 412
Query 416 GTGAAGGTGTT 426
|||||||||||
Sbjct 413 GTGAAGGTGTT 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5