BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30350.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912851 jgi|Araly1|912851|Al_scaffold_0001_3105 1546 0.0
Ahg312221 jgi|Araly1|312221|fgenesh1_pm.C_scaffold_1001001 575 3e-163
> Ahg912851 jgi|Araly1|912851|Al_scaffold_0001_3105
Length=1107
Score = 1546 bits (837), Expect = 0.0
Identities = 1024/1114 (92%), Gaps = 14/1114 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCTCGTGGTAATAGTTTCACTTCTCTTGGCAGCTTTCGCTTCTCCTCTTTTA 60
|||||||| |||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1 ATGGCTTCCCTCGTGTTAACAGTTTCACTTCTCTTGGCAACTTTCGCTTCTTCTCTTGTA 60
Query 61 GAGACTGCTCATAGTTATAATGTAACCGCCCCCAGGGTATCACTAAATCCAATTGATGCT 120
||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 61 GAGACTGCTCATAGTAATAATGTAACCATCCCCAGGGTATCACTAAATGTAATTGATGCT 120
Query 121 TGCTGGCGAAGAAACCCTAAATGGGCGACTAATCGTCAAGCCCTAGCACATTGCGCGGTA 180
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 TGCTGGCGAAGAAACCCTAATTGGGCCACTAACCGTCAAGCCCTAGCACATTGCGCGGTA 180
Query 181 GGGTACGGGAAAGCAGCAATAGGGGGAAAAAACGGTCCGATCTACGTGGTTACAAACCCA 240
|||||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 181 GGGTACGGGAAAGCCGCAGTAGGGGGGAAACACGGGCCGATCTACGTGGTTACAAACCCA 240
Query 241 TCAGACAACCCTACACGCCCTAGCCCCGGAACCTTAAGATATGCGGTGAGCCAACCTAAA 300
||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 241 TCAGACAACCCTACAAGCCCTAGCCCCGGAACCTTAAGATTTGCGGTGACCCAACCAAAA 300
Query 301 CCGCTGTGGATCACATTTGCACGTGACATGGTGATAGTGTTGAAAAGCCAGCTCATGATT 360
|| || ||||||||||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct 301 CCACTATGGATCACATTCGCACGTGACATGGTGATAGTGTTGAAAAGCGAGCTCATGGTG 360
Query 361 AACAGCTACAAGACAATCGACGGAAGAGGGGCAAAGGTTGAAATTGCCAACGGACCATGC 420
|||||||||||||| ||||| || ||||||||||| |||||||| |||||||| ||||||
Sbjct 361 AACAGCTACAAGACGATCGATGGGAGAGGGGCAAAAGTTGAAATAGCCAACGGGCCATGC 420
Query 421 TTAAGGATCAGACAAGTGAAG-CATGTCATTATACATGGGATAAGTATCCATGATTGTAA 479
|||||||||| ||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 421 TTAAGGATCAAACAAGTG-AGCCATGTCATTATACATGGTATTAGTATCCATGATTGTAA 479
Query 480 AGCAGATCCCAATGGAAT-GGATGGTGATGGAATACGCGTTTTTCAATCTACACATGTTT 538
| ||| | |||| || || ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 480 ACCAGGTTCCAAAGG-ATGGGATGGTGACGGAATACGAGTTTTTCAATCTACACATGTTT 538
Query 539 GGATCGATCATTGTTTCCTTTCTCGGTGCCATGATGGTTTGATCGATGTGATTGTTTCTT 598
||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||
Sbjct 539 GGATCGATCATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGTGATTCTTTCTT 598
Query 599 CTACGGCTGTCACGATTTCAAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCG 658
|||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 599 CTACGGCTATCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATATTACTCG 658
Query 659 GACATGATGACAGTTATATGGGAGATAAGGA-CATGAGAGTTACAATTGCATTCAATACT 717
|||||||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||
Sbjct 659 GACATGATGACAATTACATGGGAGATAA-AATCATGAGAGTTACCATTGCATTCAATACT 717
Query 718 TTTGGACCGGGTCTCATTGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCACATGTAGCA 777
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 TTTGGACCGGGTCTGATTGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCGCATGTAGCA 777
Query 778 AACAATAGGTACGAGAAATGGCAAATGTACGCGATCGGAGGAAGTGCTAATCCAATTATC 837
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 778 AACAATAGGTACGAGAAATGGCAAATGTATGCGATTGGAGGAAGTGCTAATCCAATTATC 837
Query 838 TTTAGTGAAGGCAACTACTTCGTTGCTCCCGAAAAA-CGTAGCAGCAAACAGGTGACGAA 896
|||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 838 TTTAGTGAAGGCAACTACTTCGTTGCTCCCGACAAAGC-TAGCAACAAACAGGTGACGAA 896
Query 897 GAGAATGA-TGGCTGGACCTGATTCTAAAAGATGGAAATGGGGTACGTCTAGAGATGTTT 955
||||||| || | ||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 897 GAGAATGGGTG-CGGGACCTGATTCTAAAAGATGGAAATGGGGTACGGCTAAAGACGTTT 955
Query 956 TCATGAACGGAGCTTTCTTCG-GACCGCCAGGAGTAATAGTCAGGCCGTTGTACAAAGGA 1014
||||||||||||||||||||| | ||| | || | |||||||||||| |||||||||| |
Sbjct 956 TCATGAACGGAGCTTTCTTCGTG-CCGTCTGGCGGAATAGTCAGGCCATTGTACAAAGCA 1014
Query 1015 GGAGAGGGGTTTCGGGTGGCACATGGCTCTCTCGTCCCTTCTCTTACTTCCTCTGCCGGT 1074
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GGAGAGGGGTTTCAGGTCGCCCATGGCTCTCTCGTCCCTTCTCTTACTTCCTCTGCCGGT 1074
Query 1075 CCTCTCCGTTGCTACGTC-GGCAGGATTTGCTAA 1107
|||||||||||||||| | |||||||||||||||
Sbjct 1075 CCTCTCCGTTGCTACG-CAGGCAGGATTTGCTAA 1107
> Ahg312221 jgi|Araly1|312221|fgenesh1_pm.C_scaffold_1001001
Length=1152
Score = 575 bits (311), Expect = 3e-163
Identities = 520/620 (84%), Gaps = 17/620 (3%)
Strand=Plus/Plus
Query 498 GGATGGTGATGGAATACG-CGTTTTTCAATCTACACATGTTTGGATCGATCATTGTTTCC 556
||||||||| | |||| | | ||||| ||| ||||| ||||||| |||||||||| |
Sbjct 540 GGATGGTGACGCAATA-GCCATTTTTGGTTCTTCACATATTTGGATTGATCATTGTTACT 598
Query 557 TTTCTCGGTGCCATGATGGTTTGATCGATGTGA-TTGTTTCTTCTACGGCTGTCACGATT 615
|||||||||| || ||||||||||||||||| | || | |||| ||||| ||||| |||
Sbjct 599 TTTCTCGGTGTCAAGATGGTTTGATCGATGT-ACTTCATGCTTCGACGGCCGTCACTATT 657
Query 616 TCAAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATGATGACAGTTAT 675
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||| | ||
Sbjct 658 TCTAATAACTACTTCACTCAGCATGATAAAGTGATGTTACTCGGACACAATGACAATAAT 717
Query 676 ATGGGAGATAAGGACATGAGAGTTACAATTGCATTCAATAC-TTTTGGACCGGGTCTCAT 734
||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 718 GTGGAAGATAAGAACATGAGAGTTACAATTGCATTCAA-CCATTTTGGACCGGGTCTTAT 776
Query 735 TGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCACATGTAGCAAACAATAGGTACGAGAA 794
||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 777 TGAGAGAATGCCTAGAGTGCGAAGAGGGTATGCGCATGTAGCAAACAATAGGTACGAGAA 836
Query 795 ATGGCAAATGTACGCGATCGGAGGAAGTGCTAATCCAATTATCTTTAGTGAAGGCAACTA 854
||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 837 GTGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATCTTTAGTGAAGGCAACTA 896
Query 855 CTTCGTTGCTCCCGAAAAACGTAGCAGCAAACAGGTGACGAAGAGAAT-GATGGCTGGAC 913
|||||||||| | || | | ||||| ||||||||||| || ||||| ||| | ||||
Sbjct 897 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAG-TGGAT 955
Query 914 CTGATTCTAAAAGATGGAAATGGGGTACGTCTAGAGATGTTTTCATGAACGGAGCTTTCT 973
||||| | |||||||||||| | ||||| | ||| ||||||| ||| ||||||| ||
Sbjct 956 ATGATTGGAGGAGATGGAAATGGAGAACGTCCAAAGACGTTTTCAAGAATGGAGCTTACT 1015
Query 974 TCG-GACCGCCAGG--A-GTAATAGTCAGGCCGTTGTACA-AAGGAGGAGAGGGGTTTCG 1028
||| | ||| | || | | || || | |||||||||| ||| || |||| ||||||
Sbjct 1016 TCGTG-CCGTCTGGCTACGGAACCGTAACGCCGTTGTACGGAAG-AGCAGAGTGGTTTCC 1073
Query 1029 GGTGGCACATGGCTCTCTCGTCCCTTCTCTTACTTCCTCTGCCGGTCCTCTCCGTTGCTA 1088
|||| | || |||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1074 GGTGTCTCACGGCTCTCTCGTCCCTTCTCTTACTTCGTCCGCCGGTCCTCTCCATTGCTA 1133
Query 1089 CGTC-GGCAGGATTTGCTAA 1107
|| ||||| |||||||||
Sbjct 1134 T-TCCGGCAGAATTTGCTAA 1152
Score = 377 bits (204), Expect = 8e-104
Identities = 396/488 (81%), Gaps = 16/488 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCTCGTGGTAATAGTTTCACTTCTCTTGGCAGCTTTCGCTTCTCCTCTTTTA 60
||||||||||| | ||| | ||||||||||||| ||||||||| ||||| | || ||
Sbjct 1 ATGGCTTCTCTTTTCTTAACACTTTCACTTCTCTTTGCAGCTTTCTCTTCTTTTATTGTA 60
Query 61 GAGACTGCTCATAGTTATAATGTA-ACCGCCCCCAGGGTATCACTAAATCCAATTGATGC 119
||| | ||| | || || | || || |||| ||| ||||||||| || ||| |
Sbjct 61 GAGGCGGCTTACGGTAATGGT-TATACAATTCCCAAACTATTACTAAATCCTATCGATTC 119
Query 120 TTGCTGGCGAAGAAACCCTAAATGGGCGACTAATCGTCAAGCCCTAGCAC-ATTGCGCGG 178
|||||||||||||||||||| |||||| ||| |||| | ||||| | |||||||||
Sbjct 120 TTGCTGGCGAAGAAACCCTAGTTGGGCGTTTAACCGTCGTTCTCTAGC-CGATTGCGCGG 178
Query 179 TAGGGTACGGGAAAGCAGCAATAGGGGGAAAAAAC-GGTCCGATCTACGTGGTTACAAAC 237
|||||| |||||| |||| | ||||| ||| || ||| ||||||||||||||||||||
Sbjct 179 TAGGGTTTGGGAAATCAGCGGTTGGGGGGAAATACGGGT-CGATCTACGTGGTTACAAAC 237
Query 238 CCATCAGACAACCCT-ACACGCCCTAGCCCCGGAAC-CTTAAGATATGCGGTGAGCCAAC 295
||||||||| ||||| | | |||||| || ||||| ||| ||| | || |||| ||||
Sbjct 238 CCATCAGACGACCCTGA-AAACCCTAGACCAGGAACTCTT-AGACACGCCGTGATCCAAT 295
Query 296 CTAAACCGCTGTGGATCACATTTGCACGTGACATGGTGATAGTGTTG-AAAAGCCAGCTC 354
||||||| || ||||||||||| |||||||||||||| ||||||||| ||| | | |||
Sbjct 296 CTAAACCACTATGGATCACATTCGCACGTGACATGGTCATAGTGTTGCGAAA-CGAACTC 354
Query 355 ATGATTAACAGCTACAAGACAATCGACGGAAGAGGGGCAAAGGTTGAAATTGCCAACGGA 414
|| || |||||||||||||| ||||| |||||||||||||| || ||||||||| | |||
Sbjct 355 ATCATGAACAGCTACAAGACGATCGATGGAAGAGGGGCAAAAGTGGAAATTGCCTATGGA 414
Query 415 CCATGCTTAAGGAT-CAGACAAGTGAAG-CATGTCATTATACATGGGATAAGTATCCATG 472
|||||| ||| ||| || ||| ||| || |||||||||||||||||||||||||||||||
Sbjct 415 CCATGCATAACGATCCA-ACATGTG-AGCCATGTCATTATACATGGGATAAGTATCCATG 472
Query 473 ATTGTAAA 480
||||||||
Sbjct 473 ATTGTAAA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5