BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30360.1
Length=2600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473259 jgi|Araly1|473259|fgenesh2_kg.1__3213__AT1G30360.1 3945 0.0
> Ahg473259 jgi|Araly1|473259|fgenesh2_kg.1__3213__AT1G30360.1
Length=2563
Score = 3945 bits (2136), Expect = 0.0
Identities = 2449/2595 (94%), Gaps = 41/2595 (2%)
Strand=Plus/Plus
Query 12 AACAATAGAAAAATATCTTCCTTTCTTTTTCTGTGAATACACCAATAAAGTGACAAAAG- 70
||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||
Sbjct 1 AACAATAGAAAAATATCTT-CTTTCTTTTTCTGTGAATACATCTATAAAGT-ACAAAAGA 58
Query 71 -AAAAAGCCTGTCTTCTCTCACCTGT---AATTACCAGAAGACAATAT-AAACTG-TTAC 124
|||||||||||| |||||||||||| |||||||||||| ||| | |||| | ||||
Sbjct 59 AAAAAAGCCTGTCCTCTCTCACCTGTAAAAATTACCAGAAG--AATCTCAAACGGTTTAC 116
Query 125 TTTCCTTCTTTTGTTGTACCCCTTTAAAAACGGCTACTTTAGAGAACTTGAGAAGATTTA 184
||||||||||||||| | | ||||||||||||||||| || | | ||| ||||||
Sbjct 117 TTTCCTTCTTTTGTT-TTCACCTTTAAAAACGGCTAC-TT---G-A---GAG--GATTTA 165
Query 185 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCTAAACCCAGATGGAGTTTGGATCTTT 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 166 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCAAAACCCAGATGGAGTTTGGATCTTT 225
Query 245 TCTTGTGTCCTTAGGGACATCTTTTGTTATCTTCGTCATTCTCATGCTTCTCTTCACCTG 304
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 226 TCTTGTGTCCTTAGGGACATCTTTTGTTGTCTTCGTCGTTCTCATGCTTCTCTTCACATG 285
Query 305 GCTTTCTCGCAAATCTGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGCT 364
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 286 GCTTTCTCGCAAATCCGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGTT 345
Query 365 GGAGCCATGGGAAGGCACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GGAGCCATGGGAAGGTACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 405
Query 425 GACTTCCTCTGAACAAGATGTCGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 484
|||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 406 GACTTCTTCTGAGCAAGACGTTGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 465
Query 485 CTTCTTGAGCACTGTTCTGGGGATATTTGCTTGTTCCAGTCTTCTTCTCCTACCAACTCT 544
|||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 466 CTTCTTGACCACTGTTCTGGGGATATTTGCTTGTTCCGGTCTTCTTCTCTTACCGACTCT 525
Query 545 ACTGCCTCTAGCCGCTACAGACAACAACATAAAGAACACAAAGAATGCGACAGATACCAC 604
|||||||||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct 526 ACTGCCTCTAGCCGCTACAGACAACAACTTAAAGAACAC-AA-AA----ACAGATACCAC 579
Query 605 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACaaaaaaaaG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACAAAAAAAAG 639
Query 665 TTCGAGGCTGTGGGCGTTCCTAGGAGCTGTTTACTGGATATCTTTGGTCACATATTTCTT 724
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 640 TCCGAGGCTGTGGGCGTTCCTAGGAGCGGTTTACTGGATATCTTTGGTCACATATTTCTT 699
Query 725 CTTGTGGAAAGCTTATAAGCATGTCTCTTCATTGAGAGCTCAAGCTCTGATGTCTGCTGA 784
|||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||
Sbjct 700 CTTGTGGAAAGCTTATAAGCATGTCTCTACGTTGAGGGCACAAGCTCTGATGTCTGCTGA 759
Query 785 TGTAAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTGCACCACCTGACGGGCA 844
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 760 TGTCAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTTCACCACCTGACGGGCA 819
Query 845 GACACAGAAAGAGTTTATTGATTCTTATTTCAGAGAAATATACCCTGAGACATTCTACAG 904
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 820 GACACAGAAAGAGTTCATCGATTCTTATTTCAGAGAAATATACCCCGAGACATTCTACAG 879
Query 905 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAAATATGGGAAAAATTGGAAGGTTA 964
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 880 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAGATATGGGGAAAGTTGGAAGGTTA 939
Query 965 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATA-TTAGCAGCAACTAATAACCGTCCCACGA 1023
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 940 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATACTT-GCAGCAACTAATAACCGACCCACGA 998
Query 1024 ACAAAACCGGCTTCTGTGGGCTAGTCGGTAAACAAGTAGACAGCATTGAGTATTACACTG 1083
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 999 ACAAAACCGGCTTGTGTGGGCTAGTCGGTAAACAAGTTGACAGCATTGAGTATTACACCG 1058
Query 1084 AGCTAATCAACGAGTCTGTAGCCAAACTGGAAACAGAGCAGAAAGCGGTTCTTGCTGAGA 1143
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1059 AGCTAATCAACGAGTCTGTAGCCAATCTAGAAACAGAGCAGAAAGCGGTTCTTGCCGAGA 1118
Query 1144 AGCAGCAAACCGCAGCAGTGGTTTTCTTCACAACCAGGGTTGCTGCTGCATCAGCAGCTC 1203
||||||||||||| |||||||| |||||||||||| ||||||| || |||||||| ||||
Sbjct 1119 AGCAGCAAACCGCGGCAGTGGTCTTCTTCACAACCCGGGTTGCCGCCGCATCAGCCGCTC 1178
Query 1204 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCTGAGCCACGGC 1263
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1179 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCCGAGCCTCGGG 1238
Query 1264 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1298
Query 1324 TCTACTTCTTTGTTGCAGTGACCATTCTGTTTTACATGATACCAATCGCGTTCGTCTCTG 1383
|||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1299 TCTACTTCTTTGTTGCTCTGACCATTCTGTTTTATATGATCCCAATCGCGTTCGTCTCTG 1358
Query 1384 CCATCACCACTCTTAAGAATCTTCAGAGGATTATTCCGTTCATAAAGCCGGTTGTGGAGA 1443
| |||||||||||| |||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct 1359 CAATCACCACTCTTGAGAATCTTCAGAAGATTATCCCGTTCATAAAGCCGATTGTGGAGA 1418
Query 1444 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAGATTGCGCTCATTGTTTTCT 1503
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 1419 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAAATTGCGCTCCTCGTTTTCT 1478
Query 1504 TGGCCATGTTGCCGAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGGATTCCTTCACAGA 1563
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1479 TGGCGATGTTGCCTAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGAATTCCGTCGCAGA 1538
Query 1564 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCGGTCTTTAATGTCTTCA 1623
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1539 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCAGTCTTTAATGTCTTCA 1598
Query 1624 TTGGTGTTACCCTTGCTGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1683
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 TTGGTGTTACCCTTGCGGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1658
Query 1684 AACTCGACATGATTATTAACCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCC 1743
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1659 AACTCGACATGGTCATTAATCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCT 1718
Query 1744 TGACCTACGTTGCTCTCAAGTTCTTTATCGGTTATGGCCTTGAGCTGTCTCGGATCATAC 1803
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1719 TGACCTACGTTTCTCTCAAGTTCTTTATCGGTTATGGCCTTGAACTGTCTCGGATCATAC 1778
Query 1804 CTTTGATAATCTTCCACCTGAAAAAGAAGTATCTCTGCAAAACCGAAGCGGAGGTCAAAG 1863
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1779 CTTTGATAATCTTCCACCTGAAAAAGAAGTATGTCTGCAAAACCGAAGCGGAGGTCAAAG 1838
Query 1864 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACATGCTCATCC 1923
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1839 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACCTGCTCATCC 1898
Query 1924 TCACAATCACGTTCTGCTATTCAGTCATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1983
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1899 TCACAATCACGTTCTGCTATTCTGTAATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1958
Query 1984 ACTTTGGTTTAGGCTGGCTAGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2043
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 ACTTCGGTTTAGGCTGGCTGGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2018
Query 2044 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGCATACTAGCAGCGTTGTTTC 2103
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2019 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGGATACTAGCAGCGTTGTTTC 2078
Query 2104 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTTG 2163
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2079 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTCG 2138
Query 2164 TGATCCCTCTCATTATCACCTCTCTCATCTTCGGATATGTGTGCCGCCAGAAATTCTACG 2223
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2139 TGATCCCTCTCATCATCACCTCTCTCATCTTCGGTTACGTGTGCCGCCAGAAATTCTACG 2198
Query 2224 GAGGGTTCGAACACACAGCTCTCGAGGTAGCTTGCCGTGAGCTGAAGCAGAGTCCAGACC 2283
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 2199 GAGGGTTCAAACACACAGCTCTGGAGGTGGCTTGCCGTGAGCTGAAGCAGAGTCCGGACC 2258
Query 2284 TAGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAACCAGAAGAAC 2343
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2259 TCGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAAGCAGAAGAAC 2318
Query 2344 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAACGCAATAGCAGGCGTTTAAA 2403
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 2319 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAATGCAATAGGAGGCGTTTAAA 2378
Query 2404 ATTTGAATCCAATCCCCAAATTATCTCATAGAtttgttttgctggttttttagaagcttt 2463
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |
Sbjct 2379 GTTTGAATCCAATCCC-AA-TTATCTCATAGATTTGTTTTGTTGGTTTTTTAGAAGCTGT 2436
Query 2464 tattgttatgtgtgtgaattttagggtttgtttaGGATTCTTCTTTGTATGTGTTCCATG 2523
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2437 TATTGTTGTGTGTGTGAATTTTAAGGTTTGTTTAGGATTCTTCTTTGTATGTGTTCT-TG 2495
Query 2524 GTTGTTGTAACTTGTAACTTTGTAAGCTACTTTTAAACATCAACTTGATTTTTCATCATT 2583
| ||||| | |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2496 G--GTTGT---T-GTAACTTTGTAAGCTACTTTTAAATATCAACTTGATTTTTCATCAGT 2549
Query 2584 AAT-ATTCTTCTACT 2597
| | |||||||||||
Sbjct 2550 A-TGATTCTTCTACT 2563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98044290630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5