BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30370.1 Length=1590 Score E Sequences producing significant alignments: (Bits) Value Ahg922090 jgi|Araly1|922090|scaffold_103371.1 2327 0.0 > Ahg922090 jgi|Araly1|922090|scaffold_103371.1 Length=1622 Score = 2327 bits (1260), Expect = 0.0 Identities = 1485/1593 (93%), Gaps = 18/1593 (1%) Strand=Plus/Plus Query 1 ATGGAGAACGCATTGGTCAAAACTCCACTGAGAAAGCTAAGAAGAAGAAGAACT-AAACG 59 ||||||||||||||||||||||||||| |||| ||||||||||||||||||| | ||||| Sbjct 24 ATGGAGAACGCATTGGTCAAAACTCCATTGAGGAAGCTAAGAAGAAGAAGAA-TAAAACG 82 Query 60 GGTCTGGAGATTGAAGCAGAAGCTAAAGCTTGCATGGAAATCTATCAAGATCCGGGTCAA 119 |||||||||||| |||||| | |||||||| |||||||||||||||||||| Sbjct 83 GGTCTGGAGATT------GAAGCT---G---GCATGGAAGTCTATCAAGATCCGGGTCAA 130 Query 120 GTCACATCTTCCGGGTTTCTTGTCAACCAAGAAACACCTCTTCCACATTAAATCACGAAA 179 |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 131 GTCACATCTTCCAGGTTTCTTGTCAACCAAGAAACACCTCTTCCACGTTAAATCACGGAA 190 Query 180 GGAAGAACAAGATTTGTCTCAAGTGGCCCAGAGGATCTGCAAAATCTCCAATGACTCGAC 239 ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| Sbjct 191 GGAAGAACAAGATTTGTCTCAAGTGGCTCGGAGGATCTGCAAAATCTCCAACGACTCGAC 250 Query 240 CAAATCACTGGCGTTTCTACTTCAGCTTCCAAAATACTCAGCCGACGATTTTCTTGACCG 299 |||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 251 CAAATCGCTGGCGTTTTTGCTTCAGCTTCCGAAATACTCAGCGGACGATTTTCTTGACCG 310 Query 300 CGGCGATCTGATGACTCCAGCTGCGTCTCCAAGGGAAAAAATATCCAAAATGTGGCGTGA 359 ||||||||||||||||||||| |||| |||||||| || ||||| |||||||||||||| Sbjct 311 AGGCGATCTGATGACTCCAGCTACGTCCCCAAGGGAGAATATATCTAAAATGTGGCGTGA 370 Query 360 GCTTCACGGTAGCAACAATTGGGAGAATCTTCTTGATCCTCTGCATCCATGGCTTAGGAG 419 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 371 GCTTCACGGTAGCAACAATTGGGAGAATCTTCTCGATCCTCTACATCCATGGCTTAGGAG 430 Query 420 AGAAGTAACCAAATATGGAGAATTCGTGGAATCCGTTTATGATTCACTTGATTTCGATCC 479 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 431 AGAAGTAACCAAATATGGAGAATTCGTGGAATCCGTCTACGATTCACTTGATTTCGATCC 490 Query 480 TTTATCCGAATTCTGTGGAAGCTCTAGATACAACAGGAACAAACTCTTTGAAGAGCTTGG 539 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 491 TTTATCCGAATTCTGCGGAAGCTCTAGATACAACAGGAACAAACTCTTCGAAGAGCTTGG 550 Query 540 TTTAACCAGACATGGTTACAAGGTAACGAAATACATCTACGCGATGTCTCGTGTCGACGT 599 |||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||| || Sbjct 551 TTTAACCAAACATGGTTACAAGGTAACCAAATACATCTATGCGATGTCTCATGTCGATGT 610 Query 600 TCCTCAGTGGTTCTTAAGCTCGGCTTTGGGAGAGACATGGAGCAAAGATTCCAACTGGAT 659 ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 611 TCCTCAGTGGTTCTTAAGCTCAGCTATGGGAGAGACATGGAGCAAAGATTCGAACTGGAT 670 Query 660 GGGCTTTGTAGCTGTGAGTGGAGACAGAGAGTCGTTGAGGATTGGTCGGAGAGACATTGT 719 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 671 GGGGTTTGTAGCTGTGAGTGGAGACAGAGAGTCGTTGAGGATTGGTCGGAGAGACATTGT 730 Query 720 TGTGGCGTGGCGTGGAACGGTGACTCCCACGGAATGGTTCATGGATCTTAGGACGAGTAT 779 |||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| Sbjct 731 TGTGGCGTGGCGTGGAACGGTGACTCCCACAGAATGGTTCATGGATCTTAGAACAAGTAA 790 Query 780 GGAGCCGTTCGATTGTGAAGGAA-AACATGGCAAGACCGTGGTTAAGGTGCAAAGTGGGT 838 |||||||||||||| |||| | |||||||||||| |||||| ||||| ||||| |||| Sbjct 791 AGAGCCGTTCGATTGC-AAGGGAGAACATGGCAAGAACGTGGTCAAGGTCCAAAGCGGGT 849 Query 839 TTTTAAGTATCTACAACTCGAAAAGCGAACTCACACGGTACAACAAAGAAAGTGCATCTG 898 |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | Sbjct 850 TTTTCAGTATCTACAAATCGAAAAGCAAACTCACACGGTACAACAAAGAAAGTGCATCAG 909 Query 899 AGCAGACGATGGATGAAGTGAAGCGGCTAGTGAAtttttttAAGGATAGAGGCGAAGAGG 958 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 910 AGCAGACGATGGAGGAAGTGAAACGGCTAGTGAATTTTTTTAAGGATAGAGGCGAAGAGG 969 Query 959 TAAGCCTAACCATTACCGGGCATAGCCTCGGAGGTGCGCTGGCGCTTATGAACGCTTACG 1018 | ||||||||||| || ||||||||||| ||||| ||| ||||||||||||||||||| | Sbjct 970 TGAGCCTAACCATCACGGGGCATAGCCTAGGAGGCGCGTTGGCGCTTATGAACGCTTATG 1029 Query 1019 AGGCGGCTAGAGATGTTCCAGCGTTATCTGGTAACATTTCAGTGATCTCGTTTGGTGCGC 1078 ||||||| |||||||||||||| |||||||||||| |||| |||||||| |||||||||| Sbjct 1030 AGGCGGCCAGAGATGTTCCAGCATTATCTGGTAACGTTTCTGTGATCTCCTTTGGTGCGC 1089 Query 1079 CGAGGGTAGGTAACTTGGCATTCAAGGAAAAGCTAAACAGTTTAGGAGTTAAGGTGTTAC 1138 |||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| Sbjct 1090 CGAGAGTAGGTAACTTGGCATTCAAGGAAAGGCTAAATAGTTTAGGTGTTAAGGTGTTAC 1149 Query 1139 GTGTGGTGAACAAGCAAGACATTGTACCTAAGCTACCTGGTATCGTGTTCAACAAGGTAC 1198 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1150 GTGTGGTGAACAAGCAAGACATTGTCCCTAAGCTTCCTGGTATCGTGTTCAACAAGGTAC 1209 Query 1199 TTAACAAACTTAATCCGATAACTTCAAGGCTCAATTGGGTCTACAGGCATGTCGGAACGC 1258 | ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1210 TAAACAAACTTAACCCGATTACTTCAAGGCTCAATTGGGTCTACAGGCACGTCGGAACGC 1269 Query 1259 AGCTTAAACTCGATGTCTTCAGTTCGCCTTACGTAAAACGTGATTCAGACTTAGGGAGGG 1318 ||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 1270 AGCTTAAGCTCGATGTGTTTAGTTCGCCTTACGTAAAACGCGATTCAGACTTAGGGAGGG 1329 Query 1319 CTCATAATCTAGAGGTGTATCTCCATGTTTTGGATGGCTTCCACCGCAAGAAATCTGGGT 1378 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1330 CGCATAATCTAGAGGTGTATCTCCATGTTTTGGATGGCTTCCACCGTAAGAAATCTGGGT 1389 Query 1379 TTAGGGTTAACGCTAGGAGAGACGTTGCTTCGGTGAACAAGAGCACAGATATGTTGTTGG 1438 ||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1390 TTAGGGTTAACGCAAGGAGAGACGTTGCTTCTGTGAACAAGAGCACGGATATGTTGTTGG 1449 Query 1439 ATCATCTAAGAATACCTGAGTTTTGGTACCAAGTGGCACATAAGGGTCTGATCCTTAACA 1498 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1450 ATCATCTAAGAATACCTGAGTTTTGGTACCAAGTGGCACATAAGGGTCTGATCCTCAACA 1509 Query 1499 AACAGACTGGCCGGTGGGTGAAGCCTGTCCGTGCACCTGAAGACATTCCCTCTCCGTTA- 1557 ||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 1510 AACAGACCGGCCGGTGGGTGAAGCCCGTCCGTGCGCCCGAAGACATTCCCTCTCCGTTAT 1569 Query 1558 CCGACCGGACCAAAACCTATTTATAGCTTATGA 1590 || |||||||||||||| ||||||| ||||||| Sbjct 1570 CC-ACCGGACCAAAACCGATTTATAACTTATGA 1601 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59573143180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5