BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30370.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922090 jgi|Araly1|922090|scaffold_103371.1 2327 0.0
> Ahg922090 jgi|Araly1|922090|scaffold_103371.1
Length=1622
Score = 2327 bits (1260), Expect = 0.0
Identities = 1485/1593 (93%), Gaps = 18/1593 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAACGCATTGGTCAAAACTCCACTGAGAAAGCTAAGAAGAAGAAGAACT-AAACG 59
||||||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||
Sbjct 24 ATGGAGAACGCATTGGTCAAAACTCCATTGAGGAAGCTAAGAAGAAGAAGAA-TAAAACG 82
Query 60 GGTCTGGAGATTGAAGCAGAAGCTAAAGCTTGCATGGAAATCTATCAAGATCCGGGTCAA 119
|||||||||||| |||||| | |||||||| ||||||||||||||||||||
Sbjct 83 GGTCTGGAGATT------GAAGCT---G---GCATGGAAGTCTATCAAGATCCGGGTCAA 130
Query 120 GTCACATCTTCCGGGTTTCTTGTCAACCAAGAAACACCTCTTCCACATTAAATCACGAAA 179
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 131 GTCACATCTTCCAGGTTTCTTGTCAACCAAGAAACACCTCTTCCACGTTAAATCACGGAA 190
Query 180 GGAAGAACAAGATTTGTCTCAAGTGGCCCAGAGGATCTGCAAAATCTCCAATGACTCGAC 239
||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 191 GGAAGAACAAGATTTGTCTCAAGTGGCTCGGAGGATCTGCAAAATCTCCAACGACTCGAC 250
Query 240 CAAATCACTGGCGTTTCTACTTCAGCTTCCAAAATACTCAGCCGACGATTTTCTTGACCG 299
|||||| ||||||||| | ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 251 CAAATCGCTGGCGTTTTTGCTTCAGCTTCCGAAATACTCAGCGGACGATTTTCTTGACCG 310
Query 300 CGGCGATCTGATGACTCCAGCTGCGTCTCCAAGGGAAAAAATATCCAAAATGTGGCGTGA 359
||||||||||||||||||||| |||| |||||||| || ||||| ||||||||||||||
Sbjct 311 AGGCGATCTGATGACTCCAGCTACGTCCCCAAGGGAGAATATATCTAAAATGTGGCGTGA 370
Query 360 GCTTCACGGTAGCAACAATTGGGAGAATCTTCTTGATCCTCTGCATCCATGGCTTAGGAG 419
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 371 GCTTCACGGTAGCAACAATTGGGAGAATCTTCTCGATCCTCTACATCCATGGCTTAGGAG 430
Query 420 AGAAGTAACCAAATATGGAGAATTCGTGGAATCCGTTTATGATTCACTTGATTTCGATCC 479
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 431 AGAAGTAACCAAATATGGAGAATTCGTGGAATCCGTCTACGATTCACTTGATTTCGATCC 490
Query 480 TTTATCCGAATTCTGTGGAAGCTCTAGATACAACAGGAACAAACTCTTTGAAGAGCTTGG 539
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 491 TTTATCCGAATTCTGCGGAAGCTCTAGATACAACAGGAACAAACTCTTCGAAGAGCTTGG 550
Query 540 TTTAACCAGACATGGTTACAAGGTAACGAAATACATCTACGCGATGTCTCGTGTCGACGT 599
|||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||| ||
Sbjct 551 TTTAACCAAACATGGTTACAAGGTAACCAAATACATCTATGCGATGTCTCATGTCGATGT 610
Query 600 TCCTCAGTGGTTCTTAAGCTCGGCTTTGGGAGAGACATGGAGCAAAGATTCCAACTGGAT 659
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 611 TCCTCAGTGGTTCTTAAGCTCAGCTATGGGAGAGACATGGAGCAAAGATTCGAACTGGAT 670
Query 660 GGGCTTTGTAGCTGTGAGTGGAGACAGAGAGTCGTTGAGGATTGGTCGGAGAGACATTGT 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GGGGTTTGTAGCTGTGAGTGGAGACAGAGAGTCGTTGAGGATTGGTCGGAGAGACATTGT 730
Query 720 TGTGGCGTGGCGTGGAACGGTGACTCCCACGGAATGGTTCATGGATCTTAGGACGAGTAT 779
|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 731 TGTGGCGTGGCGTGGAACGGTGACTCCCACAGAATGGTTCATGGATCTTAGAACAAGTAA 790
Query 780 GGAGCCGTTCGATTGTGAAGGAA-AACATGGCAAGACCGTGGTTAAGGTGCAAAGTGGGT 838
|||||||||||||| |||| | |||||||||||| |||||| ||||| ||||| ||||
Sbjct 791 AGAGCCGTTCGATTGC-AAGGGAGAACATGGCAAGAACGTGGTCAAGGTCCAAAGCGGGT 849
Query 839 TTTTAAGTATCTACAACTCGAAAAGCGAACTCACACGGTACAACAAAGAAAGTGCATCTG 898
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 850 TTTTCAGTATCTACAAATCGAAAAGCAAACTCACACGGTACAACAAAGAAAGTGCATCAG 909
Query 899 AGCAGACGATGGATGAAGTGAAGCGGCTAGTGAAtttttttAAGGATAGAGGCGAAGAGG 958
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 910 AGCAGACGATGGAGGAAGTGAAACGGCTAGTGAATTTTTTTAAGGATAGAGGCGAAGAGG 969
Query 959 TAAGCCTAACCATTACCGGGCATAGCCTCGGAGGTGCGCTGGCGCTTATGAACGCTTACG 1018
| ||||||||||| || ||||||||||| ||||| ||| ||||||||||||||||||| |
Sbjct 970 TGAGCCTAACCATCACGGGGCATAGCCTAGGAGGCGCGTTGGCGCTTATGAACGCTTATG 1029
Query 1019 AGGCGGCTAGAGATGTTCCAGCGTTATCTGGTAACATTTCAGTGATCTCGTTTGGTGCGC 1078
||||||| |||||||||||||| |||||||||||| |||| |||||||| ||||||||||
Sbjct 1030 AGGCGGCCAGAGATGTTCCAGCATTATCTGGTAACGTTTCTGTGATCTCCTTTGGTGCGC 1089
Query 1079 CGAGGGTAGGTAACTTGGCATTCAAGGAAAAGCTAAACAGTTTAGGAGTTAAGGTGTTAC 1138
|||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1090 CGAGAGTAGGTAACTTGGCATTCAAGGAAAGGCTAAATAGTTTAGGTGTTAAGGTGTTAC 1149
Query 1139 GTGTGGTGAACAAGCAAGACATTGTACCTAAGCTACCTGGTATCGTGTTCAACAAGGTAC 1198
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1150 GTGTGGTGAACAAGCAAGACATTGTCCCTAAGCTTCCTGGTATCGTGTTCAACAAGGTAC 1209
Query 1199 TTAACAAACTTAATCCGATAACTTCAAGGCTCAATTGGGTCTACAGGCATGTCGGAACGC 1258
| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1210 TAAACAAACTTAACCCGATTACTTCAAGGCTCAATTGGGTCTACAGGCACGTCGGAACGC 1269
Query 1259 AGCTTAAACTCGATGTCTTCAGTTCGCCTTACGTAAAACGTGATTCAGACTTAGGGAGGG 1318
||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1270 AGCTTAAGCTCGATGTGTTTAGTTCGCCTTACGTAAAACGCGATTCAGACTTAGGGAGGG 1329
Query 1319 CTCATAATCTAGAGGTGTATCTCCATGTTTTGGATGGCTTCCACCGCAAGAAATCTGGGT 1378
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1330 CGCATAATCTAGAGGTGTATCTCCATGTTTTGGATGGCTTCCACCGTAAGAAATCTGGGT 1389
Query 1379 TTAGGGTTAACGCTAGGAGAGACGTTGCTTCGGTGAACAAGAGCACAGATATGTTGTTGG 1438
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1390 TTAGGGTTAACGCAAGGAGAGACGTTGCTTCTGTGAACAAGAGCACGGATATGTTGTTGG 1449
Query 1439 ATCATCTAAGAATACCTGAGTTTTGGTACCAAGTGGCACATAAGGGTCTGATCCTTAACA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1450 ATCATCTAAGAATACCTGAGTTTTGGTACCAAGTGGCACATAAGGGTCTGATCCTCAACA 1509
Query 1499 AACAGACTGGCCGGTGGGTGAAGCCTGTCCGTGCACCTGAAGACATTCCCTCTCCGTTA- 1557
||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1510 AACAGACCGGCCGGTGGGTGAAGCCCGTCCGTGCGCCCGAAGACATTCCCTCTCCGTTAT 1569
Query 1558 CCGACCGGACCAAAACCTATTTATAGCTTATGA 1590
|| |||||||||||||| ||||||| |||||||
Sbjct 1570 CC-ACCGGACCAAAACCGATTTATAACTTATGA 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5