BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30460.1
Length=2631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922101 jgi|Araly1|922101|scaffold_103382.1 3033 0.0
> Ahg922101 jgi|Araly1|922101|scaffold_103382.1
Length=1936
Score = 3033 bits (1642), Expect = 0.0
Identities = 1842/1940 (95%), Gaps = 7/1940 (0%)
Strand=Plus/Plus
Query 55 CCAAACCCTAGAAAAATCCTTAGCAATGGAGGATGCTGATGGACTTAGCTTCGATTTCGA 114
|||||||||||||||| || | ||||||||| ||||||||||| ||||||||||||||
Sbjct 1 CCAAACCCTAGAAAAA---TT-G-AATGGAGGAGGCTGATGGACTCAGCTTCGATTTCGA 55
Query 115 AGGCGGTCTTGATTCCGGACCTGTTCAGAACACCGCTTCCGTCCCGGTTGCTCCGCCTGA 174
||||||||| ||||||||||||| |||| | ||||||| ||||||||||||||||||||
Sbjct 56 AGGCGGTCTCGATTCCGGACCTGCTCAGCCCTCCGCTTCAGTCCCGGTTGCTCCGCCTGA 115
Query 175 AAACTCTTCCTCCGCCGCTGTTAACGTAGCACCGACCTACGATCATTCTTCCGCGACGGT 234
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 116 TAACTCTTCCTCCGCCGCTGTTAACGTAGCACCGACCTACGATCACTCCTCCGCGACGGT 175
Query 235 GGCTGGAGCTGGGAGGGGTAGAAGTTTCCGTCAAACTGTTTGTAGACACTGGCTTCGAGG 294
||| |||||||| ||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 176 GGCGGGAGCTGGCAGGGGAAGAAGTTTCCGGCAGACTGTTTGCAGACACTGGCTTCGAGG 235
Query 295 TCTGTGTATGAAAGGTGACGCCTGTGGGTTTCTCCATCAGTTCGATAAAGCTCGTATGCC 354
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 236 TCTGTGTATGAAAGGTGACGCCTGTGGGTTTCTCCATCAGTACGATAAAGCTCGTATGCC 295
Query 355 GATCTGCCGTTTTTTCCGGTTATACGGTGAATGTCGAGAGCAGGATTGTGTGTATAAACA 414
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 296 AATCTGCCGATTTTTCCGGTTATACGGTGAATGTCGAGAGCAGGATTGTGTGTATAAGCA 355
Query 415 TACCAATGAAGATATCAAAGAATGCAATATGTACAAGCTGGGGTTTTGTCCCAATGGTCC 474
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 TACCAATGAAGATATCAAAGAATGCAATATGTACAAGCTGGGATTTTGTCCCAATGGTCC 415
Query 475 TGATTGTCGGTACAGGCATGCAAAGCTTCCTGGACCTCCACCACCAGTTGAGGAAGTTCT 534
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 416 TGATTGTCGGTACAGGCATGCAAAGCTTCCTGGACCTCCACCTCCTGTTGAGGAAGTTCT 475
Query 535 TCAGAAGATACAACAATTGACAACATACAATTATGGGACAAATAGGCTCTATCAAGCAAG 594
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||| || |
Sbjct 476 TCAGAAGATACAACAATTGACATCATACAATTATGGGCCAAATAGGTTCTATCAACCACG 535
Query 595 GAATGTTGCTCCACAGCTACAAGATAGACCTCAGGGGCAAGTTCCAATGCAAGGCCAGCC 654
||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 536 TAATGTTGCTCCACAGCTACAAGATAAACCTCAGGGGCAAGTTCCGACGCAAGGCCAGCC 595
Query 655 ACAAGAATCAGGTAACTTGCAGCAGCAACAACAACAACAACCTCAGCAATCACAACACCA 714
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 596 ACAAGAATCAGGTAACTTTCAGCAGCAACAACAACAACAACCTCAGCAAACACAACACCA 655
Query 715 GGTCAGCCAGACTCTGATACCAAATCCTGCTGATCAAACGAACAGAACATCTCATCCTTT 774
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 656 GGTCAGCCAGACTCAGATACCAAATCCTGCTGATCAAACAAACAGAACATCTCATCCTTT 715
Query 775 GCCTCAAGGGGTAAATAGGTATTTTGTAGTTAAAAGTAACAATCGAGAAAATTTTGAATT 834
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 716 GCCTCAAGGGGTAAATAGGTATTTTGTAGTTAAGAGTTGCAATCGAGAAAATTTTGAATT 775
Query 835 ATCTGTGCAACAAGGTGTGTGGGCAACACAAAGGAGCAATGAAGCTAAACTTAATGAAGC 894
|||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||
Sbjct 776 ATCTGTGCAACAAGGTGTATGGGCTACGCAAAGGAGCAATGAATCTAAACTTAATGAAGC 835
Query 895 TTTCGACTCTGTGGAAAATGTGATCTTGATATTTTCTGTCAACCGGACCCGGCATTTCCA 954
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 836 TTTCGACTCTGTGGAAAATGTGATCTTGATATTTTCTGTCAACAGGACCCGGCATTTCCA 895
Query 955 GGGGTGTGCTAAGATGACATCAAGAATTGGTGGTTACATTGGTGGAGGAAACTGGAAACA 1014
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 896 GGGCTGTGCTAAGATGACATCAAGAATTGGTAGTTACATTGGTGGAGGAAACTGGAAACA 955
Query 1015 TGAACATGGAACTGCACAGTATGGCCGGAACTTTTCAGTTAAATGGTTAAAGTTGTGCGA 1074
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGAACACGGAACTGCACAGTATGGCCGGAACTTTTCAGTTAAATGGTTAAAGTTGTGCGA 1015
Query 1075 ACTATCCTTCCACAAAACTCGGAATTTGAGGAATCCTTACAACGAAAACTTACCTGTGAA 1134
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 ACTATCCTTCCACAAAACTCGGAATTTGAGGAATCCCTACAACGAAAACTTACCTGTGAA 1075
Query 1135 GATAAGCAGAGACTGTCAGGAATTAGAGCCCTCCGTTGGTGAACAACTCGCTTCTTTGCT 1194
||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||
Sbjct 1076 GATAAGCAGAGACTGTCAGGAGTTAGAGCCCTCCGTCGGTGAACAGCTTGCTTCTTTGCT 1135
Query 1195 TTATCTTGAACCAGATAGCGAGCTTATGGCAATCTCCATAGCTGCAGAAGCAAAACGAGA 1254
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1136 TTATCTTGAACCAGATAGCGATCTTATGGCAATCTCCATAGCTGCAGAAGCGAAACGAGA 1195
Query 1255 AGAAGAGAAAGCAAAGGGTGTGAATCCAGAGAGTAGAGCTGAGAACCCAGACATTGTGCC 1314
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 AGAAGAAAAAGCGAAGGGTGTGAATCCAGAGAGCAGAGCTGAGAACCCAGACATTGTGCC 1255
Query 1315 GTTtgaagacaatgaagaagaggaagaggaagaagatgaaagtgaggaggaagaagagag 1374
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GTTTGAAGACAACGAAGAAGAGGAAGAGGAAGAAGATGAAAGTGAGGAGGAAGAAGAGAG 1315
Query 1375 CATGGCGGGGGGTCCTCAAGGCAGAGGAAGAGGAAGAGGAATAATGTGGCCTCCTCAAAT 1434
||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1316 CATGGCGGGCGGTCCTCAAGGCAGAGGAAGGGGAAGAGGAATGATGTGGCCGCCTCAAAT 1375
Query 1435 GCCTTTAGGACGCGGAATCAGACCGATGCCTGGAATGGGAGGTTTCCCTCTCGGAGTAAT 1494
|||| ||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1376 GCCTCTAGGACGCGGAATCAGACCAATGCCTGGAATGGGAGGTTTCCCTCTTGGGGTAAT 1435
Query 1495 GGGCCCTGGCGATGCATTTCCCTATGGGCCTGGTGGATATAATGGTATGCCAGATCCATT 1554
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1436 GGGCCCCGGCGATGCATTTCCCTATGGGCCTGGTGGATATAACGGTATGCCAGATCCATT 1495
Query 1555 TGGCATGGGTCCAAGACCCTTTGGACCGTATGGACCGAGGTTCGGTGGTGATTTCAGAGG 1614
||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 1496 TGGCATGGGTCCAAGACCCTTTGGACCATATGGACCTAGGTTCGGTGTTGATTTCAGAGG 1555
Query 1615 ACCAGTACCTGGGATGATGTTTCCTGGTAGGCCTCCGCAACAGTTTCCACATGGCGGTTA 1674
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1556 ACCAGTACCCGGGATGATGTTTCCGGGTAGACCTCCGCAACAGTTTCCACATGGCGGTTA 1615
Query 1675 TGGTATGATGGGAGGCGGACGAGGCCCGCATATGGGAGGAATGGGAAACGCTCCTAGAGG 1734
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 1616 TGGTATGATGGGAGGTGGACGTGGCCCGCATATGGGAGGAATGGGAAACGGTCCTCGAGG 1675
Query 1735 AGGGAGGCCGATGTATTATCCACCAGCAACATCATCAGCACGACCTGGCCCAAGCAACCG 1794
||| ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1676 AGGCAGGCCAATGTATTATCCACCAGCAACATCATCAGCACGTCCTGGCCCCACCAACCG 1735
Query 1795 AAAAACACCTGAGAGAAGCGATGAGAGAGGAGTGTCGGG-GGATCAACAAAATCAGGATG 1853
|||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1736 GAAAACACCTGAGGGAAGCGATGAGAGAGGAGTG-GGGGCGGATCAACAAAATCAGGATA 1794
Query 1854 CATCACATGACATGGAGCAGTTCGAGGTTGGAAACAGTTTAAGAAACGAAGAGAGTGAAA 1913
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1795 CATCACATGACATGGAGCAGTTCGAGGTTGGAAACAGTCTGAGAAACGAAGAGAGTGAAA 1854
Query 1914 GTGAAGACGAAGACGAAGCTCCAAGACGATCAAGACATGGAGAAGGAAAGAAGCGTCGGT 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GTGAAGACGAAGACGAAGCTCCAAGACGATCAAGACATGGAGAAGGAAAGAAGCGTCGGT 1914
Query 1974 GAGAGAGACTTACACAACAA 1993
|||||||||| |||||||||
Sbjct 1915 GAGAGAGACTCACACAACAA 1934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99225088225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5