BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30470.1
Length=2939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473272 jgi|Araly1|473272|fgenesh2_kg.1__3226__AT1G30470.1 3969 0.0
Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771 418 1e-115
> Ahg473272 jgi|Araly1|473272|fgenesh2_kg.1__3226__AT1G30470.1
Length=2954
Score = 3969 bits (2149), Expect = 0.0
Identities = 2398/2517 (95%), Gaps = 22/2517 (1%)
Strand=Plus/Plus
Query 11 AAGAAGCACTACCCCTCCCGCAATTGAAGGTTCTCTTCGTCGCTCACA-TCCAATCTCTA 69
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1 AAGAAGCACTACCCCTCCCGCAATTGAAGGTTCTCTTCGTCGCTCACATTCC-ATCTCTT 59
Query 70 TCGATCTCAGATTCCAATTTCTGCGAATATTTTCTTCCCAGAGAGATTACAGATTCTAGG 129
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 60 TCGATCTCAGATTCCAATTCCTGCGAATTTTTTCTTCCCATAGAGATTACAGATTCTAGG 119
Query 130 GTTTCGAATAG-TTCTTTCCAATCTAGTCTTCTTCCTTTTGTTTCTCGGG-CGAAATTTC 187
|||||| |||| |||||||||||| ||| ||||| ||||| | ||| ||| |||||||||
Sbjct 120 GTTTCG-ATAGCTTCTTTCCAATCGAGTTTTCTT-CTTTTATCTCT-GGGACGAAATTTC 176
Query 188 CCTTAGGGTTTCGAAGATCCGAATCTGTGGACGGAGACAATTCGACG---TCTTC-TTGA 243
|||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||
Sbjct 177 CCTTAGGGTTTCGAAGATCCGAATCTGTGGACGGAGGCAATTCGACGTTTTTTTCTTTGA 236
Query 244 GCTGCAAAGATGTTCTGGCGAATGGCTGGATTATCAACGGCGTCTGCCGTTGAAGCAATT 303
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 237 GCTGCAAAGATGTTCTGGCGAATGGCGGGATTGTCAACGGCGTCTGCCGTTGAAGCAATT 296
Query 304 TTGGATAAAGATAGTTTCACATTAGAGGATCTTCTTGACGAGGATGAAATTATTCAAGAA 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 297 TTGGATAAAGATAGTTTCACATTAGAGGACCTTCTTGACGAGGATGAAATTATTCAAGAA 356
Query 364 TGCAAAGCCCTGAATGGACGACTCTTAAATTTCTTGAGAGAAAAAGTGCAAGTGGAACAA 423
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 TGCAAAGCCCTGAACGGACGACTCTTAAATTTCTTGAGAGAAAGAGTGCAAGTGGAACAA 416
Query 424 CTTATTAGGTACATAATAGAGGAGCCTCTTGAGGACGTGGAAAAGAAGCGAACATTCAAG 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 417 CTTATTAGGTACATAATAGAGGAGCCTCTTGAGGATGTGGAAAAGAAGCGAACATTCAAG 476
Query 484 TTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAACACTA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAACACTA 536
Query 544 GTAGAAGATGAGGAGTTGATGTTATTATTGTTTTCGTTTTTGGAAGCTAAAGAAACCCAT 603
||||| ||||||||||||||| || | |||||||||| || ||||||||||||||||||
Sbjct 537 GTAGAGGATGAGGAGTTGATGCTAGTGCTGTTTTCGTTCTTAGAAGCTAAAGAAACCCAT 596
Query 604 AACTCATTACTTGCCGGGTACTTCAGCAAGGTTGTCATTTGTCTGCTGGTGCGGAAGACG 663
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 AACTCATTGCTTGCCGGGTACTTCAGTAAGGTTGTCATTTGTCTGCTGGTGCGGAAGACG 656
Query 664 ATCCCATTCATGCAATTTATAAAAGATCATCAAGAAATTCTGAAGCAGCTTGTTGATTTG 723
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 ATCCCTTTCATGCAATTTATAAAAGATCATCAAGAAATACTGAAGCAGCTTGTTGATTTG 716
Query 724 ATTGGTATTACATCTATTATGGAGGTTTTAAAACGCCTGGTTGGTACTGATGAACACCTA 783
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 717 ATTGGTATTACATCTATAATGGAGGTTTTAAAACGTCTGGTTGGTACTGATGAGCACCTA 776
Query 784 TATTCAAACTATACAAGTGCAATGCAGTGGATAGAAGATACGGATGTTTTAGAGATGATT 843
||||||||||| |||||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct 777 TATTCAAACTACACAAGTGCAATGCAGTGGGTAGAGGATACAGATGTGTTAGAGATGATT 836
Query 844 GTGGACAAGTTTGGCTCTTCGGAGTCTCCCGAGGTACATGCCAATGCAGCTGAAATTCTG 903
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 GTGGACAAGTTTGGCTCCTCGGATTCTCCCGAGGTACATGCCAATGCAGCTGAAATTCTT 896
Query 904 TGTACTGTTGCAAGATACGCACCCCCTGGTCTTGCTACAAAACTTTCCAGCCCCAGCTGC 963
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 897 TGTACTGTAGCAAGATACGCACCCCCTGGTCTTGCTACAAAACTTTCCAGCCCCAGTTGT 956
Query 964 ACTGGAAGGTTGTTAAAACATACTTTAGAAGATTCACGGCCTAAGTCTGTTCTGGTTAAT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACTGGAAGGTTGTTAAAACATACTTTAGAAGATTCACGGCCTAAGTCTGTTCTGGTTAAT 1016
Query 1024 TCGTTATCTGTATGCATATCTCTACTCGATCCTAAGAGGTTTACACTGGGCACTTATCAT 1083
|| |||||||||||||||||||| || |||||||||||||||||| |||| |||||||||
Sbjct 1017 TCATTATCTGTATGCATATCTCTGCTGGATCCTAAGAGGTTTACATTGGGGACTTATCAT 1076
Query 1084 ATATATGGTCGTCAACTT-ACCCATGGAAGCATGGTAACTAATCCCGAGACAGTTGAGGG 1142
|||||||| |||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1077 ATATATGGCCGTCAA-TTAACCCATGGAAGCATGGTAACTAATCCTGAGACAGTGGAGGG 1135
Query 1143 AATGCTTGGAAGCCTAGGTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGGTGT 1202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1136 AATGCTTGGAAGCCTAGGTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGATGT 1195
Query 1203 TTTGTTAACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGATTGT 1262
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTTGTTGACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGATTGT 1255
Query 1263 AGAGTTTATTTCAGTCTTGCTCACTGTCGGTAGTGAAGCAGCAGAGAAGGAAGTAATTCG 1322
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1256 AGAGTTTATTTCAGTCTTACTCACTGTCGGAAGTGAAGCAGCAGAGAAGGAAGTAATTCG 1315
Query 1323 ACTTGGAGCGGTGAAAAGAGTGTTGGACTTGTTCTTTGAGTATCCCTACAACAATTTTTT 1382
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 ACTTGGAGCGGTGAAAAGAGTGTTGGACTTGTTCTTCGAGTATCCCTACAACAATTTTTT 1375
Query 1383 GCATCACCATGTGGAGAATGTAATTCTCTCATGTATGGAGAGCAAAAACTCTCAACTTGT 1442
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1376 GCATCACCATGTGGAGAATGTAATTCTCTCATGTTTGGAGAGCAAAAACTCTCAACTTGT 1435
Query 1443 TGACCATCTTCTCAGTGAGTGCAATCTTATTGGGAGTATACTAGAGGCGGAAAAGGACTC 1502
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1436 TGACCATCTTTTCAGTGAGTGCAATCTTATTGGGAGTATACTAGAGGCGGAAAAAGACTC 1495
Query 1503 CACATTAACTGCTGGTGATTCTGATAAGCTTCAGCCTACAGTCCCTGCAGAGGGTAAAAA 1562
||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 1496 CACATTAACTGCTAGTGATTCTAATAAGCTTCAGCCGACAGTCCCTGCAGAGGGTAGAAA 1555
Query 1563 GCCACTCAGGATTGGAAACATCGGTCATTTGACTCGTATCTCCAACAAACTTCTTCAGCT 1622
||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 1556 GCCACTCAGGATTGGAAACATTGGTCATATGACTCGTATCTCGAACAAACTTCTTCAGCT 1615
Query 1623 AGCTAATAGCAATGTCGAAATTCAGTCACATTTGCAGGAAAATAGCAAATGGGTGGACTG 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 AGCTAATAGCAATGTCGAAATTCAGTCACATTTGCAGGAAAATAGCAAATGGGTGGACTG 1675
Query 1683 GCAGACAGATGTCTTGTCGAAGCGTAATACATTGGAAAATGTCTACTCTTGGGCCTGCGG 1742
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 GCAGACAGATGTATTGTCAAAGCGTAATACATTGGAAAATGTCTACTCTTGGGCCTGCGG 1735
Query 1743 GAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAG 1802
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GAGGCCAACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAG 1795
Query 1803 AGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAGGCTTTTCGATATGGAATTTA 1862
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1796 AGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAGGCCTTTCGGTATGGAATTTA 1855
Query 1863 CAGCAATGATGACATGGATGAGGCCCAAGGCTCTATGGAACGCGATGATGAGGATGTCTA 1922
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1856 CAGCAATGATGACATGGATGAGGCCCAAGGCTCTATGGAACGTGATGATGAGGATGTCTA 1915
Query 1923 CTTTGATGATGAATCTGCAGAAGTCGTCATATCCTCCTTGCGCCTTGGAGATGACCAGGA 1982
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1916 CTTTGATGATGAATCTGCAGAAGTCGTCATATCTTCCTTGCGCCTTGGAGATGATCAGGA 1975
Query 1983 GAGTGATTCTCTCTTCACAAATTCAAACTGGTTCGCATTCGATGATGATAAAGCTGCGAA 2042
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1976 GAGCGATTCTCTCTTCACAAATTCAAACTGGTTTGCATTCGATGATGATAAAGCTGCAAA 2035
Query 2043 TGAGCGCTCAATGACCTCAGCTGCTTCCCCTTCACCCAATGCTGATGGAGATGGTGAAGA 2102
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2036 TGAGCGCTCAATGAGCTCAGCTACTTCCCCTTCACCCAATGCTGATGGAGATGGTGACGA 2095
Query 2103 TGATGATGATGTCGTCATAGGCGAAGCCGATGAATTCAACGCCACTGCAGCCTCTTCTCC 2162
|||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 2096 TGATGATG-T--CGTCATAGGCGAAGCCGATGAATTCAACGACACTGCAGCTTCTTCCCC 2152
Query 2163 ACCTGTTGATATGGAAACAGAGGATTCTACATCAAAGCATCCTTCTGAAAACCCGAGTGA 2222
||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2153 ACCTGGTGATATGGAAACAGAAGATTCTACATCAAAGCATCCTTCTGAAAATCCGAGTGA 2212
Query 2223 ACCAGAACCTGAAAAGTCACCTGCTTGGGTTGAGTGGAGAGAGACCTCTGAGTCCACCGC 2282
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2213 ACCAGAACCTGAAAAATCACCTGCTTGGGTTGAGTGGAGAGAGACCTCTGAGTCCACTGC 2272
Query 2283 ACCACCTTCTTCCAACCCAGAGGAGACTACCATATTGTCCAATGGTGATGTTCAAATTGA 2342
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2273 ACC---TTCTTCCAACCCAGATGAAACTACCATATTGTCCAATGGTGATGTTCAAATTGA 2329
Query 2343 GAAAGAGGATAatgatgatgatgatgatACTGATAACAAAAGTGCAGTGAAAACACCAGG 2402
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 2330 GAAAGAGGATAATGATGATGATGAT-AC-C-GATAACAAAAGTGCAGTGAAAACACCAGG 2386
Query 2403 TGTACCTGGCGATGAAACCACAGAGAAGTTACCAGATGAGAGTGGTGTTGAACCCACTGA 2462
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 TGTATCTGGCGATGAAACCACAGAGAAGTTACCAGATGAGAGTGGTGTTGAACCCACTGA 2446
Query 2463 GAACTCACCAAAAGCTAGTGGCATTGAACCCACAGAGAGCTCACCAAAAGCGAGTGG 2519
|| |||| ||||||| ||||||||||||||||| |||| |||||| ||||| |||||
Sbjct 2447 GAGCTCATCAAAAGCGAGTGGCATTGAACCCACTGAGATCTCACCCAAAGCTAGTGG 2503
Score = 760 bits (411), Expect = 0.0
Identities = 471/499 (94%), Gaps = 7/499 (1%)
Strand=Plus/Plus
Query 2442 GAGTGGTGTTGAACCCACTGAGAACTCACCAAAAGCTAGTGGCATTGAACCCACAGAGAG 2501
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 2462 GAGTGGCATTGAACCCACTGAGATCTCACCCAAAGCTAGTGGCATTGAACCCACGGAGAC 2521
Query 2502 CTCACCAAAAGCGAGTGGAGCTGAAGTAACTGGA-AACTTGAGAGATTCCGATCCTGCTG 2560
|||||| ||||| |||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 2522 CTCACCTAAAGCTAGTGGAGCTGAAGTAACT-GAGAACTTGAGAGATTACGATCCTGCTG 2580
Query 2561 AATCTCATGCGGATGCTAAAAGCTCTGAACCTGAAAGCCCTCATGGGACAAAAGAAACAG 2620
|||| ||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2581 AATCGCATGCAGATGCGAAAAGCTCTGAACCTGAAAGCCCCCATGAGACAAAAGAAACAG 2640
Query 2621 AGGTTGCAGCAGAAGCAGATACCAAAGAGACCGAAGAGGCTGTGAAGGAACCAGAGAAGG 2680
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2641 AGGTTGCAGCAGAAGCAGATACCAAAGAGAAAGAAGAAGCTGTGAAGGAACCAGAGAAGG 2700
Query 2681 TAGTGTGAGCTTTTTACTTAACCGGGGGTCTCTTTGACTGATAAAACAAAATTTCTTCTG 2740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2701 TAGTGTGAGCTTTTTACTTAACCGGGGGTCTCTTTGACTGATAAAACAAAATTTCTTCTG 2760
Query 2741 GTTTAGTTTGATTAAGGGCTTTGTCTGTTTTGGGTACAATTTATTATTCTAtttttttCT 2800
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2761 GTTTAGTTTGATTAAGGGCTTTGTCTGTTTTGGGTACAATTTATTATTCT-TTTTTT-CT 2818
Query 2801 TTTCCTTGTTTGTTTACTTCATTGTATCATCTCCAAATCCGGTATTTTTTATTCAACATT 2860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2819 TTTCCTTGTTTGTTTACTTCATTGTATCATCTCCAAATCCGGTATTTTTTATTCAACATT 2878
Query 2861 ATTGTCGACCAAAATTTGTTACTAGCTTTTCATATTTTATTAGTATAATCTTTTACCTCA 2920
||||||| ||||||| |||| ||||||||||||| | || |||||||||||||||||||
Sbjct 2879 ATTGTCGTCCAAAAT--GTTAGTAGCTTTTCATATCT-ATCAGTATAATCTTTTACCTCA 2935
Query 2921 GCTAGACTCATCAAGTGTC 2939
|||||||||||||||||||
Sbjct 2936 GCTAGACTCATCAAGTGTC 2954
> Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771
Length=2166
Score = 418 bits (226), Expect = 1e-115
Identities = 254/268 (95%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 480 CAAGTTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAAC 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 894 CAAGTTTCCTTTCATTGCCTGTGAAATCTTCACATGTGAGATTGAAATGATACTGAAAAC 953
Query 540 ACTAGTAGAAGATGAGGAGTTGATGTTATTATTGTTTTCGTTTTTGGAAGCTAAAGAAAC 599
|||||| || ||||||||||||||| |||| |||||||||| || |||| |||||||||
Sbjct 954 ACTAGTCGAGGATGAGGAGTTGATGCTATTGCTGTTTTCGTTCTTAGAAGATAAAGAAAC 1013
Query 600 CCATAACTCATTACTTGCCGGGTACTTCAGCAAGGTTGTCATTTGTCTGCTGGTGCGGAA 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CCATAACTCATTGCTTGCCGGGTACTTCAGCAAGGTTGTCATTTGTCTGCTGGTGCGGAA 1073
Query 660 GACGATCCCATTCATGCAATTTATAAAAGATCATCAAGAAATTCTGAAGCAGCTTGTTGA 719
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1074 GACGATCCCTTTCATGCAATTTATAAAAGATCATCAAGAAATACTGAAGCAGCTTGTTGA 1133
Query 720 TTTGATTGGTATTACATCTATTATGGAG 747
||| ||||||||||||||||| ||||||
Sbjct 1134 TTTAATTGGTATTACATCTATAATGGAG 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110956883685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5