BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30473.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912871 jgi|Araly1|912871|Al_scaffold_0001_3125 791 0.0
Ahg473274 jgi|Araly1|473274|fgenesh2_kg.1__3228__AT1G30475.1 416 2e-115
> Ahg912871 jgi|Araly1|912871|Al_scaffold_0001_3125
Length=771
Score = 791 bits (428), Expect = 0.0
Identities = 568/631 (90%), Gaps = 27/631 (4%)
Strand=Plus/Plus
Query 237 ATGGCGAACCCAAACCAATCCGTCCGGACGTGCATACTAAAAGTCGATCTAAAGTGTTGC 296
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAACCCAAACCAATCCGTCCGGACTTGCATACTAAAAGTCGATCTAAAGTGTTGC 60
Query 297 ATTGGTTGCCaaaaaaaaGCAAGCATGAAATTGCAGAGTATCTCTGGTGTAGAGGAAGTG 356
| ||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||
Sbjct 61 ACCGGTTGCCAAAAAAAAGCAAGCATGAAATTGCGGAGAATCTCTGGTGTCGACGAAGTG 120
Query 357 GAGTATAACATCGAAAAAGGGCTCATGACAGTCAGAGGTGACGTAGAACCCATGGCTCTG 416
|||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||
Sbjct 121 GAGTATAACAGCGAAAAACGGCTCATGACAGTCACAGGTGACGTAGAACCGATGGCTCTG 180
Query 417 GTTCGTAAACTTAATAAACAT-GACAGAAAAACAGAGCTTTTCTCAGTCAAGTACCAGCT 475
||||||||||||| |||| || | || |||||||||||||||||||||||||||||||||
Sbjct 181 GTTCGTAAACTTACTAAATATCG-CATAAAAACAGAGCTTTTCTCAGTCAAGTACCAGCT 239
Query 476 TGATGATGATGATCTAAACAGTGATTCA-GAAGACTACTCTTCTTCTGACTCTACTAATT 534
||||||||||||||||||||||||| | |||||| | |||||||||||||||||| ||
Sbjct 240 TGATGATGATGATCTAAACAGTGATG-ATGAAGACGGCACTTCTTCTGACTCTACTAGTT 298
Query 535 CATCTTATGATCCTAAACCCATGGAACGTCAATTCCAAGAGAAGATGATGCAGCAGAAGA 594
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 299 CATATTATGATCCTAAACCCATGGAACGTGAATTCCAAGAGAAGATGATGCAGCAGAAGA 358
Query 595 AGAAGAAGTCTGGGATACTAAAAATGCTTTCTCTTTT-ATGGTGTTTCAGCAGTAAATCA 653
|||||| ||||| |||||| | |||| | || | |||||| |||||||||||||
Sbjct 359 AGAAGA---CTGGGCTACTAACC-T-CTTT-T-TTAGGAGGGTGTTGCAGCAGTAAATCA 411
Query 654 AAAGTTGTTCAGCCTTTACCGATGCGAAACCGAAACTGGCATGTCCCATCAAAGTTTGAG 713
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AACGTTGTTCAGCCTTTACCGATGCGAAACCGAAACTGGCATGTCCCATCAAAGTTTGAG 471
Query 714 AATGTTCCTCCTGGCTTTGGC-TTC--------AATTCTACTACATCGTCGCAGTTGCGG 764
|||| |||||||| |||||| ||| |||||||||||||| ||||||||||||
Sbjct 472 AATGGTCCTCCTGTTTTTGGCCTTCCTTTTGGCAATTCTACTACATCATCGCAGTTGCGG 531
Query 765 CCTCCGCATCCAATGATGCCCTATCCACCAATGATGCAACCACCAATGATGCAGCAACAA 824
||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 532 CCTCCGCATCCAATGATGCCCTATCCACCAACGATGCAACCA--A-TGATGCAGCAACAA 588
Query 825 CGACCAC-TA--ATGATGCAGCAACAAGCAC 852
| ||||| || ||||||||||||||| |||
Sbjct 589 CCACCACCTATGATGATGCAGCAACAACCAC 619
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 859 CAATGCCACCTAATGTTAACATGTTCCAGTCAGCACCCCA 898
||||||||||||||||||||||||||||| ||||||||||
Sbjct 665 CAATGCCACCTAATGTTAACATGTTCCAGCCAGCACCCCA 704
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 834 ATGATGCAGCAACAAGCACAAGTTCCAATG 863
||||||||||||||||||||||||||||||
Sbjct 625 ATGATGCAGCAACAAGCACAAGTTCCAATG 654
> Ahg473274 jgi|Araly1|473274|fgenesh2_kg.1__3228__AT1G30475.1
Length=773
Score = 416 bits (225), Expect = 2e-115
Identities = 357/413 (86%), Gaps = 39/413 (9%)
Strand=Plus/Minus
Query 1123 CTGCATCTCCCAAACCTGGTTCCATAAACA--TTTGGATAAGATGAGCTTTGTTTGTGTC 1180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 773 CTGCATCTCCCAAACCTGGTTCCATAAACATTTTTGGATAAGATGAGCTTTGTTTGTGTC 714
Query 1181 ACGGAACAAGAATCTCATTC-ATAACCCAACAGAGAAAACATAAATAACAACTCAAATCT 1239
||||||||||||||| |||| |||||||||| |||||||| || | | ||||
Sbjct 713 ACGGAACAAGAATCTTATTCAATAACCCAACTGAGAAAAC----AT----A---AGATCT 665
Query 1240 GTGCCTATTGCTAGTACTAGAATCTATTGTTTTTGATACAGAGATTTCTCTTGGAGAATA 1299
|||||||||||||| ||||||| ||||||| | ||||||| ||||||| ||||||||||
Sbjct 664 GTGCCTATTGCTAGCACTAGAACCTATTGTCTCTGATACA-CGATTTCTTTTGGAGAATA 606
Query 1300 CTTGTCTTGAGATTTGTCTGTTGTGCTTGTGCATCATGTTTTCCTCCGATTTAATGGTTG 1359
|||||||||||| || || |||| | || | | |||||||||||
Sbjct 605 CTTGTCTTGAGA--------TT-TG--TGTG--T--TG------T--G-TTTAATGGTTG 570
Query 1360 TTTTCATGTTCGCCCTCCAAATCTTTCAAGTATCCCATGAACAAAAGAAACCCGAAAAGG 1419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 569 TTTTCATGTTCGCCCTCCAAATCTTTCAAGTATCCCATGAACAAAAGAAACCCGAAGAGG 510
Query 1420 AAGAATCCACCTGAAGAGCTCCCTCCACCGCCTCCGccaccaccaccaccaccaTCATCC 1479
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 509 AAGAATCCACCTGAAGAGCTCCCTCCACCACCTCCGCCACCACCACCACCACCATCATCT 450
Query 1480 CGAGGTGGGAACCCGTTTCCACCGTCATCAAGCTTTGGGGATTTAACTTTTCC 1532
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 449 CGAGGCGGGAATCCGTTTCCACCGTCATCAAGCTTTGGTGATTTCTCTTTTCC 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5