BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30475.1
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473274 jgi|Araly1|473274|fgenesh2_kg.1__3228__AT1G30475.1 872 0.0
> Ahg473274 jgi|Araly1|473274|fgenesh2_kg.1__3228__AT1G30475.1
Length=773
Score = 872 bits (472), Expect = 0.0
Identities = 708/811 (87%), Gaps = 59/811 (7%)
Strand=Plus/Plus
Query 13 CTTCGAGGAGCAACCAAAATCCCAAATTTTTCCTCGACAAAAAATCTACCTGC-TTTGAT 71
||||||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 2 CTTCGAGGAGCAACC-AAATCCCAGATTTTT-CTCGACAAAAAATCTACCTGCTTTTGAT 59
Query 72 CCAAATCTCTATGGTTATGCCGGTAATGAATCCATCATTGTGTATTGGTACACAAACATC 131
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 CCAAATCTTTATGGTTATGCCGGTAATGAATCCATCATTGTGTATTGGTACACAACCATC 119
Query 132 GGTGTACCTCGCTCCTCGTGAGAA---ATC-TTTTACGAGTAATGGAAACTCTCAAAGGC 187
| |||||||||||||||||| ||| ||| |||||||| ||||||||||||||| ||||
Sbjct 120 GCTGTACCTCGCTCCTCGTG-GAATTCATCATTTTACGACTAATGGAAACTCTCATAGGC 178
Query 188 GTTATCCTACAAGCGTTTCTATGCAACGCCAGCCTTGGAGCCAAAGTAAATTCCCTTCTC 247
||| |||| ||||||||||||||||||| |||| | |||||| |||||||| |||||||
Sbjct 179 GTTCTCCTTCAAGCGTTTCTATGCAACGTCAGCGGTCGAGCCAGAGTAAATTTCCTTCTC 238
Query 248 TCCA-------GG-A--TG--CAGTGCAACCAGTTGTCGTCTCTAAGAATAAAAGACCAG 295
|||| || | | |||||||| ||||||| ||||||||| ||||| || | |
Sbjct 239 TCCAGGCTGTTGGAACGCGCCCAGTGCAATCAGTTGTTGTCTCTAAGGATAAACGATCTG 298
Query 296 TCTTTGCATGTAACTCTGCGCTGAATTCAAAATGCAGTCAAGGACAAACACAGACCGTTA 355
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 TCTTTGCGTGTAACTCTGCTCTGAATTCAAAATGCAGTCAAGGGCAAACACAGACCGTTA 358
Query 356 CACGGCAATCACCAACAATCACACAAGCTCCTACTCATGGAAAAGTTAAATCCCCAAAGC 415
| ||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 359 CGCGGAAATCACCAACAATCACACAAGTTCCTACTCATGGAAAAGAGAAATCACCAAAGC 418
Query 416 TTGATGACGGTGGAAACGGGTTCCCACCTCGGGATGAtggtggtggtggtggtggCGGAG 475
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 419 TTGATGACGGTGGAAACGGATTCCCGCCTCGAGATGATGGTGGTGGTGGTGGTGGCGGAG 478
Query 476 GCGGTGGAGGGAGCTCTTCAGGTGGATTCTTCCTTTTCGGGTTTCTTTTGTTCATGGGAT 535
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 GTGGTGGAGGGAGCTCTTCAGGTGGATTCTTCCTCTTCGGGTTTCTTTTGTTCATGGGAT 538
Query 536 ACTTGAAAGATTTGGAGGGCGAACATGAAAACAACCATTAAATCGGAGGAAAACATGATG 595
|||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 539 ACTTGAAAGATTTGGAGGGCGAACATGAAAACAACCATTAAA-C--A------CA--A-- 585
Query 596 CACAAGCACAACAGACAAATCTCAAGACAAGTATTCTCCAAGAGAAATCTCTGTATCAAA 655
|||| || || |||||||||||||||||||||| ||||||| ||||||| |
Sbjct 586 CACA--CA-AA--------TCTCAAGACAAGTATTCTCCAAAAGAAATCG-TGTATCAGA 633
Query 656 AACAATAGATTCTAGTACTAGCAATAGGCACAGATTTGAGTTGTTATTTATGTTTTCTCT 715
||||||| ||||||| |||||||||||||||||| | | || ||||||||
Sbjct 634 GACAATAGGTTCTAGTGCTAGCAATAGGCACAGATCT---T----AT----GTTTTCTCA 682
Query 716 GTTGGGTTAT-GAATGAGATTCTTGTTCCGTGACACAAACAAAGCTCATCTTATCCAAA- 773
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 GTTGGGTTATTGAATAAGATTCTTGTTCCGTGACACAAACAAAGCTCATCTTATCCAAAA 742
Query 774 -TGTTTATGGAACCAGGTTTGGGAGATGCAG 803
||||||||||||||||||||||||||||||
Sbjct 743 ATGTTTATGGAACCAGGTTTGGGAGATGCAG 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31489529442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5