BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30480.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473276 jgi|Araly1|473276|fgenesh2_kg.1__3230__AT1G30480.1 1940 0.0
> Ahg473276 jgi|Araly1|473276|fgenesh2_kg.1__3230__AT1G30480.1
Length=1402
Score = 1940 bits (1050), Expect = 0.0
Identities = 1324/1445 (92%), Gaps = 64/1445 (4%)
Strand=Plus/Plus
Query 50 TCTCGCACAAATCAATTTTAA-AGCGTTGGCTTCTATTGCAAGAATCTAAATAGCCCAGA 108
||||||||||||||| ||||| | |||||||||||||||||||||| | ||
Sbjct 1 TCTCGCACAAATCAA-TTTAAGAACGTTGGCTTCTATTGCAAGAAT-T--AT-------- 48
Query 109 AAATAAAATAAAAGGACAAAAtatttctcctttgtttgtcggttttttattttc-caaca 167
|||| |||| | | ||| |||||||||||||||| ||||||||||| ||||| || |
Sbjct 49 AAAT-AAAT---A-GCCAACATATTTCTCCTTTGTTAGTCGGTTTTTTTTTTTCGAAAAA 103
Query 168 aa-atgat-a-tttgt-ttta-tt--t-atta-ttaC-TAAGGCTGATCGGaaaaaatta 217
|| || || | ||| | |||| || | ||| || | ||||||||||||
Sbjct 104 AACATAATAACTTT-TATTTATTTGGTCTTTATTTTCGGAAGGCTGATCGG--------- 153
Query 218 aaaaCCCTAATTTGAGCAGATCTTTCCAATTGAAAGCGAACCGTGAATTTTG-AG--TCT 274
||||||||||||||||||||||||||| ||||||||||||||||||| | | || | |
Sbjct 154 AAAACCCTAATTTGAGCAGATCTTTCC-ATTGAAAGCGAACCGTGAA-TCAGAAGATTTT 211
Query 275 CTTTACCGGCGGCGAAAAAATGCTTGGTGGATTATACGGAGATCTTCCTCCACCGACCGA 334
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 212 C-TTACCAGCGGCG-AAAAATGCTTGGTGGATTATACGGAGATCTTCCTCCACCGTCCGA 269
Query 335 TGATGAGAAACCCAGTGGAAACTCCTCTTCCGTCTGGTCAAGCAGTACCAAAATGGCTCC 394
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 270 TGATGAGAAACCCAGCGGAAACTCCTCCTCCGTCTGGTCAAGCAGTACCAAAATGGCTCC 329
Query 395 ACCTACACTTCGCAAACCACCAGCTTTTGCTCCCCCGCAAACAATCTTAAGACCTCTCAA 454
|||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||
Sbjct 330 ACCTACGCTTCGCAAACCACCTGCTTTTGCTCCGCCGCAAACAATCCTAAGACCTCAGAA 389
Query 455 CAAACCTAAACCTATCGTTTCGGCTCCGTACAAGCCTCCTCCT-C--C-T-T-CGAATTC 508
|||||| ||||||||||| || | | |||||||||||||||| | | | | | |||||
Sbjct 390 CAAACCAAAACCTATCGTGTCATCGCAGTACAAGCCTCCTCCTCCTTCTTCTACTAATTC 449
Query 509 ATCGCAATCGGTGCTTATTCCGGCGAACGAATCAGCACCTTCGCATCAGCCTGCATTGGT 568
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 450 ATCGCAATCGGTGCTTACTCCGGCGAACGAATCAGCACCTTCGCATCAGCCAGCA----T 505
Query 569 TGGTGTGACTTCATCGGTGATTGAAGAGTACGATCCAGCGAGACCTAACGATTACGAGGA 628
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 TGGT-TG----CATCGGTGATTGAAGAGTACGATCCAGCGAGACCTAACGATTACGAGGA 560
Query 629 GTATAAGAGGGAGAAGAAGAGGAAAGCTACGGAAGCTgagatgaaacgagagatggataa 688
|||||| |||||| ||||||||||||||| ||||||||||||||| |||||| | |||||
Sbjct 561 GTATAAAAGGGAGCAGAAGAGGAAAGCTATGGAAGCTGAGATGAAGCGAGAGCTTGATAA 620
Query 689 gagaaggcaagaggatgaggaaagagataagagagaaagagaagagagggagaaggagag 748
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 621 GAGAAGGCAAGAGGAAGAGGAAAGAGACAAGAGAGAAAGAGAAGAGAGGGACAAGGAAAG 680
Query 749 agagagagaTAACAGTGATCCGTCTCGGTTGAATATCTCCGGTGAGGAAGCGTGGAAGAG 808
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 AGAGAGAGATAACAGTGATCCGTCTCGATTGAATATCTCCGGTGAGGAAGCGTGGAAGAG 740
Query 809 ACGCGCTGCTATGAGTGGTGGTGGAAGTGGTGGGAAGGGAAGATCTTCGTCTCCGCCGGG 868
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 741 ACGCGCTGCTATGAGTGGTGGTGGAAGTGGTGGGAAGCGAAGATCTTCGTCTCCGCCTGG 800
Query 869 GAATGTTGATGGGTTTAGTATTGGGAAATCGGAGACGAGTGGGTTAGGAGTAGGAGCAGG 928
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 801 GAATGTTGATGGGTTTAGTATCGGGAAATCGGAGACGAGTGGGTTAGGAGTTGGAGCAGG 860
Query 929 TGGACAGATGACAGCTGCTCAGAGGATGATGGCGAAGATGGGATGGAAACAAGGACAAGG 988
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TGGGCAGATGACAGCTGCTCAGAGGATGATGGCGAAGATGGGATGGAAACAAGGACAAGG 920
Query 989 GCTTGGGAAATCAGAGCAAGGGATTACTACGCCATTGATGGCTAAGAAGACTGATCGTAG 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GCTTGGGAAATCAGAGCAAGGGATTACTACGCCATTGATGGCTAAGAAGACTGATCGTAG 980
Query 1049 AGCTGGTGTCATTGTCAATGCTAGTGAGAATAAATCTTCTTCGGCGGAGAAGAAGGTTGT 1108
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 981 AGCTGGTGTGATTGTGAATGCTAGTGAGAATAAATCTTCTTCGGCGGAGAAGAA-G--GT 1037
Query 1109 TAAGAGTGTTAATATCAATGGTGAACCAACCAGGGTTTTGCTTCTTAGAAACATGGTTGG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TAAGAGTGTTAATATCAATGGTGAACCAACCAGGGTTTTGCTTCTTAGAAACATGGTTGG 1097
Query 1169 GCCAGGACAAGTAGATGATGAGCTAGAAGATGAGGTAGGAGGCGAGTGTGGCAAATACGG 1228
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1098 GCCAGGAGAAGTAGATGATGAGCTAGAAGATGAGGTGGGAGGCGAGTGTGGCAAATACGG 1157
Query 1229 TACAGTCACTCGTGTACTGATATTCGAGATCACTGAACCGAACTTCCCTGTACACGAAGC 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TACAGTCACTCGTGTACTGATATTCGAGATCACTGAACCGAACTTCCCTGTACACGAAGC 1217
Query 1289 AGTAAGAATCTTTGTTCAGTTTTCAAGACCCGAGGAAACAACTAAAGCCCTTGTAGACCT 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AGTAAGAATCTTTGTTCAGTTTTCAAGACCCGAGGAAACAACTAAAGCCCTTGTAGACCT 1277
Query 1349 CGATGGGAGATACTTTGGAGGAAGAACCGTACGTGCAACGTTCTATGATGAAGAGAAATT 1408
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1278 CGATGGGAGATACTTTGGAGGAAGAACTGTACGTGCAACATTCTATGATGAGGAGAAATT 1337
Query 1409 CAGTAAGAACGAGTTGGCTCCAGTTCCAGGTGAAATCCCTGGCTATTAATAACTCCTAAG 1468
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1338 CAGTAAGAACGAGTTGGCTCCAGTTCCAGGTGAAATCCCTGGCTATTAACAACTCCTAAG 1397
Query 1469 ACAAA 1473
|||||
Sbjct 1398 ACAAA 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5