BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30490.1
Length=2936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473277 jgi|Araly1|473277|fgenesh2_kg.1__3231__AT1G30490.1 4383 0.0
Ahg934072 jgi|Araly1|934072|scaffold_402060.1 2392 0.0
Ahg491408 jgi|Araly1|491408|fgenesh2_kg.7__841__AT4G32880.1 300 4e-80
> Ahg473277 jgi|Araly1|473277|fgenesh2_kg.1__3231__AT1G30490.1
Length=2838
Score = 4383 bits (2373), Expect = 0.0
Identities = 2700/2852 (95%), Gaps = 45/2852 (2%)
Strand=Plus/Plus
Query 9 GAGCAAATGaaaaaaacccaaaaaaCTCTTTTCTCCAACCATTACCATCTCATGAACACT 68
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GAGCAAATGAAAAATACCCAAAAAACTCTTTTCCCCAACCATTACCATCTCATGAACACT 60
Query 69 CTCACAGGAGGCTCTCTCTTCTCAGAGAGCCTACCCATCTAATATTTCTTCATCTGAGTC 128
|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 61 CTCAAAGGAGGCTCTCTCTTCTCAGAGAGCCTACCCATCT-A-ATTTCTTCATCTGGGTC 118
Query 129 TCTTTTAC-TTCTCTCAAAGTATCGATCTTTATTCTTCT-TTTTGTAAACCctctctctc 186
|| ||| | ||| ||||||||||||||||||| |||||| ||||| || | | |||
Sbjct 119 TCATTT-CTTTCCCTCAAAGTATCGATCTTTACTCTTCTCGTTTGT-AA----C-C-CTC 170
Query 187 tctctGATTTCTACTGACCTGTTTGGAAGATATGATGGCTCATCACTCCATGGACGATAG 246
|||| ||| || | |||||||| |||||||| | ||||||||||||||| ||
Sbjct 171 TCTC-----TCT-CT---C--TTTGGAAGTTATGATGG--C-TCACTCCATGGACGACAG 216
Query 247 AGACTCTCCTGATAAAGGATTTGATTCCGGCAAGTACGTTAGATACACGCCGGAACAAGT 306
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AGACTCTCCTGACAAAGGATTTGATTCCGGCAAGTACGTTAGATACACGCCGGAACAAGT 276
Query 307 TGAAGCTCTTGAGAGAGTTTATGCTGAGTGTCCTAAACCTAGCTCTCTGAGAAGACAACA 366
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 277 TGAAGCTCTTGAGAGAGTTTATGCTGAGTGTCCTAAACCTAGCTCTCTCAGAAGACAACA 336
Query 367 GCTTATTCGTGAATGTCCCATTCTCTGTAACATCGAGCCTCGACAGATCAAAGTTTGGTT 426
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GCTTATTCGTGAATGTCCGATTCTCTGTAACATCGAGCCTCGACAGATCAAAGTTTGGTT 396
Query 427 CCAGAATCGCAGATGTCGAGAGAAGCAGAGGAAAGAGTCAGCTCGTCTTCAGACAGTGAA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CCAGAATCGCAGATGTCGAGAGAAGCAGAGGAAAGAGTCAGCTCGTCTTCAGACAGTGAA 456
Query 487 CAGGAAGCTGAGTGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCA 546
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 CAGGAAGCTGAGTGCCATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCA 516
Query 547 AGTCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTGCTTCTGG 606
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 517 AGTCTCCAACTTGGTTTATGAGAATGGGTTCATGAAACATCGAATCCACACTGCTTCTGG 576
Query 607 GACGACCACAGACAACAGCTGTGAGTCTGTGGTCGTGAGTGGTCAGCAACGTCAGCAGCA 666
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 577 GACGACCACAGACAACAGCTGTGAGTCTGTGGTCGTGATTGGTCAGCAACGTCAGCAGCA 636
Query 667 AAACCCAACACATCAGCATCCTCAGCGTGATGTTAACAACCCAGCTAATCTTCTCTCGAT 726
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 637 AAACCCAACACATCAGCATCCACAGCGTGATGCTAACAACCCAGCTAATCTTCTCTCGAT 696
Query 727 TGCGGAGGAGACCTTGGCGGAGTTCCTTTGCAAGGCTACAGGAACTGCTGTCGACTGGGT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TGCGGAGGAGACCTTGGCGGAGTTCCTTTGCAAGGCTACAGGAACTGCTGTCGACTGGGT 756
Query 787 CCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATCGTAGCTGTTTCACGCAA 846
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 757 TCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTAGCTGTTTCACGCAA 816
Query 847 CTGCAGTGGAATAGCAGCACGTGCCTGTGGCCTCGTGAGTTTAGAACCCATGAAGGTCGC 906
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 817 CTGCAGTGGAATAGCAGCACGTGCCTGCGGCCTCGTGAGTTTAGAACCCATGAAGGTCGT 876
Query 907 TGAAATCCTCAAAGATCGTCCATCTTGGTTCCGTGACTGTCGATGTGTCGAGACTCTGAA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TGAAATCCTCAAAGATCGTCCATCTTGGTTCCGTGACTGTCGATGTGTCGAGACTCTGAA 936
Query 967 TGTTATACCCACTGGAAATGGTGGTACTATCGAGCTTGTCAACACTCAGATTTATGCTCC 1026
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 937 TGTTATACCTACTGGAAATGGTGGTACTATTGAGCTTGTCAACACTCAGATTTATGCTCC 996
Query 1027 TACAACATTAGCAGCAGCTCGTGACTTTTGGACGCTGAGATATAGTACAAGTCTAGAAGA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TACAACATTAGCAGCAGCTCGTGACTTTTGGACGCTGAGATATAGTACAAGTCTAGAAGA 1056
Query 1087 TGGAAGCTATGTGGTCTGTGAGAGATCACTCACTTCTGCAACTGGTGGCCCCAATGGTCC 1146
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1057 TGGAAGCTATGTGGTTTGTGAGAGGTCACTCACTTCTGCAACTGGTGGCCCCAATGGTCC 1116
Query 1147 ACTTTCTTCAAGCTTCGTGAGAGCCAAAATGCTGTCAAGCGGGTTTCTTATCCGTCCTTG 1206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GCTTTCTTCAAGCTTCGTGAGAGCCAAAATGCTGTCAAGCGGGTTTCTTATCCGTCCTTG 1176
Query 1207 TGATGGTGGTGGTTCCATTATTCACATCGTTGATCATGTGGACTTGGATGTCTCAAGTGT 1266
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 1177 TGATGGTGGTGGTTCCATTATCCACATCGTTGATCATGTTGACCTGGATGTCTCAAGTGT 1236
Query 1267 TCCTGAAGTCCTCAGGCCTCTTTATGAGTCTTCCAAAATCCTTGCTCAAAAAATGACTGT 1326
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1237 TCCTGAAGTCCTGAGGCCTCTTTATGAGTCTTCCAAAATTCTTGCTCAGAAAATGACCGT 1296
Query 1327 CGCTGCTCTGAGACATGTGCGCCAAATTGCTCAAGAGACTAGTGGAGAAGTCCAGTATAG 1386
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1297 GGCTGCTTTGAGACATGTGAGGCAAATTGCTCAAGAGACTAGTGGAGAAGTCCAGTATAG 1356
Query 1387 TGGTGGACGCCAGCCTGCAGTTTTAAGGACTTTCAGCCAGAGACTCTGCCGGGGTTTCAA 1446
||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1357 TGGTGGAAGACAGCCTGCAGTTTTAAGAACTTTCAGCCAAAGACTCTGCCGGGGTTTCAA 1416
Query 1447 TGATGCTGTAAATGGTTTTGTCGATGATGGATGGTCTCCAATGAGTAGTGATGGAGGAGA 1506
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 1417 TGATGCTGTTAATGGTTTTGTTGATGATGGGTGGTCTCCAATGAGTAGTGATGGAGCAGA 1476
Query 1507 GGATATTACGATCATGATTAACTCTTCCTCTGCTAAATTTGCTGGCTCCCAATACGGTAG 1566
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1477 GGATATTACAATCATGATTAACTCTTCCTCTGCTAAATTCGCTGGCTCCCAATACGGTAG 1536
Query 1567 CTCATTTCTTCCAAGTTTTGGAAGTGGTGTCCTCTGTGCCAAAGCTTCTATGCTGTTGCA 1626
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1537 CTCATTTCTTCCAAGTTTTGGAAGTGGTGTCCTGTGTGCCAAAGCTTCTATGCTGTTGCA 1596
Query 1627 GAATGTTCCACCCCTTGTATTGATTCGGTTCCTGAGAGAACACCGAGCTGAATGGGCAGA 1686
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1597 GAATGTTCCACCCCTTGTACTAATTCGTTTCCTGAGAGAACACCGAGCTGAATGGGCAGA 1656
Query 1687 CTATGGTGTCGATGCCTATTCTGCTGCATCTCTCAGAGCAACTCCATATG-CTGTTCCAT 1745
||||||||| |||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 1657 CTATGGTGTTGATGCCTATTCTGCTGCATCTCTCAGGGCAACTCCAT-TCACTGTTCCAT 1715
Query 1746 GCGTCAGAACCGGTGGGTTCCCGAGTAACCAAGTCATTCTTCCTCTCGCACAGACACTCG 1805
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1716 GCGTTAGAACCGGTGGGTTCCCGAGTAACCAAGTCATTCTTCCTCTCGCACAGACACTTG 1775
Query 1806 AACATGAAGAGTTTCTCGAAGTGGTTAGACTTGGAGGTCATGCTTACTCACCTGAAGACA 1865
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1776 AACATGAAGAGTTTCTCGAAGTGGTCAGACTCGGAGGTCATGCTTACTCACCCGAAGACA 1835
Query 1866 TGGGCTTATCCCGGGATATGTATTTACTGCAGCTTTGTAGCGGCGTTGATGAAAATGTGG 1925
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1836 TGGGTTTATCCCGGGATATGTATTTACTGCAGCTTTGCAGCGGCGTTGATGAAAATGTGG 1895
Query 1926 TTGGAGGTTGTGCTCAGCTTGTCTTTGCCCCAATCGATGAATCATTTGCTGATGATGCAC 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 TTGGAGGTTGTGCTCAGCTTGTCTTTGCCCCAATCGATGAATCATTTGCTGATGATGCAC 1955
Query 1986 CTTTGCTTCCTTCTGGTTTCCGTGTCATACCACTCGACCAAAAAACAAATCCGAATGATC 2045
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1956 CTTTGCTTCCTTCTGGTTTCCGTGTCATACCGCTCGACCAGAAAACAAATCCGAATGATC 2015
Query 2046 ATCAATCTGCAAGTCGAACACGGGATCTAGCATCGTCCCTAGATGGTTCCACCAAAACCG 2105
|||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 2016 ATCAGTCTGCAAGTCGAACACGGGATCTAGCATCATCTCTAGATGGTTCCACGAAAACCG 2075
Query 2106 ATTCGGAAACAAACTCTAGATTGGTCTTAACAATAGCCTTCCAGTTCACGTTTGATAACC 2165
|||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2076 ATTCAGAAACAAACTCCAGATTGGTCTTAACAATAGCCTTCCAGTTCACATTTGATAATC 2135
Query 2166 ATTCCAGAGACAATGTTGCTACAATGGCGAGACAGTATGTGAGGAACGTTGTTGGTTCGA 2225
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2136 ATTCAAGAGACAATGTTGCTACAATGGCGAGACAGTATGTGAGGAATGTTGTTGGTTCGA 2195
Query 2226 TTCAGAGAGTGGCTCTAGCCATTACGCCTCGTCCTGGCTCAATGCAACTTCCCACTTCCC 2285
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 TTCAGAGAGTGGCTTTAGCCATTACGCCTCGTCCTGGCTCAATGCAACTTCCCACTTCCC 2255
Query 2286 CTGAAGCTCTCACTCTTGTCCGTTGGATCACCCGTAGTTACAGTATTCATACAGGTGCAG 2345
||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 2256 CTGAAGCTCTCACCCTTGTCCGTTGGATCACCCGTAGTTACAGCATTCACACAGGTGCTG 2315
Query 2346 ATCTGTTTGGAGCTGATTCTCAGTCCTGTGGAGGAGACACATTGCTTAAGCAACTCTGGG 2405
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2316 ACCTGTTTGGAGCTGATTCTCAGTCCTGTGGAGGAGACACGTTGCTTAAGCAACTCTGGA 2375
Query 2406 ACCATAGTGATGCCATATTGTGCTGCTCCCTGAAAACTAATGCCTCACCGGTATTCACAT 2465
||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2376 ACCATTCTGATGCCATATTGTGCTGCTCCCTCAAAACTAATGGATCACCGGTATTCACAT 2435
Query 2466 TTGCAAACCAAGCTGGTTTAGACATGCTTGAAACTACACTTGTGGCACTTCAGGATATAA 2525
||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||
Sbjct 2436 TTGCAAACCAAGCCGGTTTAGACATGCTTGAAACAACGCTCGTGGCACTTCAGGATATAA 2495
Query 2526 TGCTCGACAAAACACTTGATGACTCTGGTCGTAGAGCTCTTTGCTCCGAGTTCGCCAAGA 2585
||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2496 TGCTCGACAAAACGCTTGATGACTCTGGTCGTAAAGCTCTTTGCTCCGAATTCGCCAAGA 2555
Query 2586 TCATGCAGCAGGGATATGCGAATCTTCCGGCAGGAATATGTGTGTCGAGCATGGGCAGAC 2645
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2556 TCATGCAGCAGGGCTATGCGAATCTTCCGGCGGGAATATGTGTGTCGAGCATGGGCAGAC 2615
Query 2646 CGGTTTCGTATGAGCAAGCGACGGTGTGGAAAGTTGTTGATGACAACGAATCAAACCACT 2705
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2616 CGGTTTCGTATGAGCAAGCGACGGTGTGGAAAGTTGTCGACGACAACGAATCAAACCACT 2675
Query 2706 GCTTGGCTTTTACCCTCGTTAGTTGGTCGTTTGTTTGATGAAGG-AAAAGGTTGGTTATG 2764
|||||||||||| ||||| | ||||||||| |||||||||||| |||||||||||||||
Sbjct 2676 GCTTGGCTTTTATTCTCGTGAATTGGTCGTTCGTTTGATGAAGGGAAAAGGTTGGTTATG 2735
Query 2765 TTAGATATTAAAAGTTAGGGGATGTTGTTTTTGGCTAAGGTTTGTTGAATTAGAGAGTCC 2824
|||||||||||| || | | | | |||||||||||| |||||||| ||||
Sbjct 2736 TTAGATATTAAA--TT------T-T-G-----G-CTAAGGTTTGTTAAATTAGAGGGTCC 2779
Query 2825 ATAACTCTATATGTAATATGGAAAAATTCTGA 2856
||||||| |||||||||||||||||||| |||
Sbjct 2780 ATAACTCAATATGTAATATGGAAAAATTATGA 2811
Score = 65.8 bits (35), Expect = 2e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 2874 AATTATGACATTATGTATGGCAAGATATTTATTTT 2908
|||||||||||||||||||||||||||||||||||
Sbjct 2804 AATTATGACATTATGTATGGCAAGATATTTATTTT 2838
> Ahg934072 jgi|Araly1|934072|scaffold_402060.1
Length=2624
Score = 2392 bits (1295), Expect = 0.0
Identities = 2144/2550 (84%), Gaps = 73/2550 (3%)
Strand=Plus/Plus
Query 245 AGAGACTCTCCTGATAAAGGATTTGATTCCGGCAAGTACGTTAGATACACGCCGGAACAA 304
||||| || || |||||||| || |||||||||||||| || || ||||| ||||| |||
Sbjct 84 AGAGAGTCGCCGGATAAAGGGTTGGATTCCGGCAAGTATGTGAGGTACACACCGGAGCAA 143
Query 305 GTTGAAGCTCTTGAGAGAGTTTATGCTGAGTGTCCTAAACCTAGCTCTCTGAGAAGACAA 364
|| |||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 144 GTGGAAGCTCTCGAGAGAGTTTACACTGAGTGTCCTAAGCCCAGCTCTCTGAGAAGACAA 203
Query 365 CAGCTTATTCGTGAATGTCCCATTCTCTGTAACATCGAGCCTCGA-CAGATCAAAGTTTG 423
|| || || ||||||||||| ||||||| || ||||||||| | ||||||||||||||
Sbjct 204 CAACTCATACGTGAATGTCCGATTCTCTCCAATATCGAGCCT-AAGCAGATCAAAGTTTG 262
Query 424 GTTCCAGAATCGCAGATGTCGAGAGAAGCAGAGGAAAG-AGTCAGCTCGTCTTCAGACAG 482
||||||||| |||||||||||||||||||||||||||| || | ||||| ||||| ||||
Sbjct 263 GTTCCAGAACCGCAGATGTCGAGAGAAGCAGAGGAAAGAAG-CTGCTCGCCTTCAAACAG 321
Query 483 TGAACAGGAAGCTGAGTGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGA 542
||||||| ||||| | ||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 322 TGAACAGAAAGCTCAATGCCATGAACAAACTCTTGATGGAAGAGAATGATCGTTTGCAGA 381
Query 543 AGCAAGTCTC-CAACTTGGTTTATGAGAATGGATTCATGAAACATCGAA-TCCACACTGC 600
||||||| || | ||||||| ||||||||||| ||||||||| | || | |||||| |
Sbjct 382 AGCAAGTTTCTC-ACTTGGTCTATGAGAATGGCCACATGAAACAGC-AACTTCACACTTC 439
Query 601 TTCTGGGACGACCACAGACAACAGCTGTGAGTCTGTGGTCGTGAGTGGTCAGCAACGTCA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 440 TTCTGGGACGACCACAGACAACAGCTGTGAGTCTGTGGTCGTGAGTGGTCAGCAACATCA 499
Query 661 GCAGCAAAACCCAACA-CATCAGCATCCTCAGCGTGATGTTAACAACCCAGCTA-ATCTT 718
||||||||||||| | | |||||||| || ||||||| ||||||||||||| | ||
Sbjct 500 ACAGCAAAACCCAA-ATCCTCAGCATCAGCAACGTGATGCTAACAACCCAGCTGGA-CTC 557
Query 719 CTCTCGATTGCGGAGGAGACCTTGGCGGAGTTCCTTTGCAAGGCTACAGGAACTGCTGTC 778
|| ||||| || |||||| || | || |||||||||| |||||||||||||||||||||
Sbjct 558 CTTTCGATAGCAGAGGAGGCCCTAGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTT 617
Query 779 GACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATCGTAGCTGTT 838
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 618 GACTGGGTTCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTCGCTATT 677
Query 839 TCACGCAACTGCAGTGGAATAGCAGCACGTGCCTGTGGCCTCGTGAGTTTAGAACCCATG 898
|| ||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 678 TCGCGCAACTGCAGCGGAATTGCAGCACGTGCCTGCGGCTTCGTGAGTTTAGAACCCATG 737
Query 899 AAGGTCGCTGAAATCCTCAAAGATCGTCCATCTTGGTTCCGTGACTGTCGATGTGTCGAG 958
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 738 AAGGTTGCTGAAATCCTCAAAGATCGTCCATCTTGGCTCCGTGATTGTCGATGTGTGGAT 797
Query 959 ACTCTGAATGTTATACCCACTGGAAATGGTGGTACTATCGAGCTTGTCAACACTCAGATT 1018
||||||| ||| || || ||||||||||||| ||||| |||||| | |||| |||||
Sbjct 798 ACTCTGAGTGTGATTCCTGCTGGAAATGGTGGGACTATTGAGCTTATTTACACGCAGATG 857
Query 1019 TATGCTCCTACAACATTAGCAGCAGCTCGTGACTTTTGGACGCTGAGATATAGTACAAGT 1078
||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 858 TATGCCCCTACGACTTTAGCAGCAGCTCGTGACTTTTGGACACTGAGATATAGTACATGT 917
Query 1079 CTAGAAGATGGAAGCTATGTGGTCTGTGAGAGATCACTCACTTCTGCAACTGGTGGCCCC 1138
| |||||||||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct 918 TTGGAAGATGGAAGCTATGTGGTTTGTGAGAGGTCGCTTACTTCTGCAACTGGTGGCCCC 977
Query 1139 AATGGTCCACTTTCTTCAAGCTTCGTGAGAGCCAAAATGCTGTC-AAGCGGGTTTCTTAT 1197
| ||| |||| |||||| ||||| |||||||| |||||| | | |||||||||||||||
Sbjct 978 AGTGGGCCACCTTCTTCTAGCTTTGTGAGAGCTGAAATGC-GACCAAGCGGGTTTCTTAT 1036
Query 1198 CCGTCCTTGTGATGGTGGTGGTTCCATTATTCACATCGTTGATCATGTGGA-CTTGGATG 1256
||||||||| || ||||||||||||||| | ||||| ||||||||||| || || |||||
Sbjct 1037 CCGTCCTTGCGAGGGTGGTGGTTCCATTCTCCACATTGTTGATCATGTTGATCT-GGATG 1095
Query 1257 TCTCAAGTGTTCCTGAAGTCCTCAGGCCTCTTTATGAGTCTTCCAAAATCCTTGCTCAAA 1316
|| ||||| ||||||||| | |||||||| ||||| || || || || |||||||| |
Sbjct 1096 CCTGGAGTGTCCCTGAAGTCATGAGGCCTCTCTATGAATCATCGAAGATTCTTGCTCAGA 1155
Query 1317 AAATGACTGTCGCTGCTCTGAGACATGTGCGCCAAATTGCTCAAGAGACTAGTGGAGAAG 1376
|||||||||| ||||||||||||||||| | |||||||| ||||| || ||||||||||
Sbjct 1156 AAATGACTGTTGCTGCTCTGAGACATGTAAGACAAATTGCACAAGAAACAAGTGGAGAAG 1215
Query 1377 TCCAGTATAGTGGTGGACGCCAGCCTGCAGTTTTAAGGACTTTCAGCCAGAGACTCTGCC 1436
| |||||| |||| || ||||| ||||| |||||||| || ||||| || |||||||| |
Sbjct 1216 TTCAGTATGGTGGAGGGCGCCAACCTGCGGTTTTAAGAACCTTCAGTCAAAGACTCTGTC 1275
Query 1437 GGGGTTTCAATGATGCTGTAAATGGTTTTGTCGATGATGGATGGTCTCCAATGAGTAGTG 1496
||||||||||||||||||| ||||||||||| || ||||||||||| |||||| |||| |
Sbjct 1276 GGGGTTTCAATGATGCTGTTAATGGTTTTGTGGACGATGGATGGTCACCAATGGGTAGCG 1335
Query 1497 ATGGAGGAGAGGATATTAC-GATCATGATTAACTCT-TCCTCTGCTAAATTT-GCTGGCT 1553
|||| | |||||||||||| | | ||||| |||| | ||| ||| || ||| | ||| |
Sbjct 1336 ATGGTGCAGAGGATATTACTGTT-ATGATAAACT-TGTCCCCTGGGAAGTTTTG-TGGGT 1392
Query 1554 CCCAATACGGTAGCTCATTTCTTCCAAGTTTTGGAAGTGGTGTCCTCTGTGCCAAAGCTT 1613
| || ||||||| ||||| ||||| || ||||| ||||| || || |||||||| || |
Sbjct 1393 CTCAGTACGGTAATTCATTCCTTCCGAGCTTTGGTAGTGGCGTGCTTTGTGCCAAGGCAT 1452
Query 1614 CTATGCTG-TTGCAGAATGTTCCACCC-CTTGTATTGATTCGGTTCCTGAGAGAACACCG 1671
| ||| || || ||||| ||||||||| || || || | || ||||| |||||||||||
Sbjct 1453 CGATGTTGCTT-CAGAACGTTCCACCCGCT-GTGCTGGTGCGATTCCTTAGAGAACACCG 1510
Query 1672 AGCTGAATGGGCAGACTATGGTGTCGATGCCTATTCTGCTGCATCTCTCAGAGCAACTCC 1731
|||||||||| || |||||||| ||||| ||| |||||||||| |||||||||| |||
Sbjct 1511 CTCTGAATGGGCTGATTATGGTGTGGATGCTTATGCTGCTGCATCGCTCAGAGCAAGTCC 1570
Query 1732 ATATGCTGTTCCATGCG-TCAGAACCGGTGGGTTCCCGAGTAACCAAGTCATTCTTCCTC 1790
| ||||||||| |||| | ||| | |||||||||||||||||||||||||||||||| |
Sbjct 1571 TTTTGCTGTTCCTTGCGCT-AGAGCTGGTGGGTTCCCGAGTAACCAAGTCATTCTTCCCC 1629
Query 1791 TCGCACAGACACTCGAACATGAAGAGTTTCTCGAAGTGGTTAGACTTGGAGGTCATGCTT 1850
| || |||||| | ||||||||||||| ||| || ||||||||||||| |||||| ||||
Sbjct 1630 TTGCGCAGACAGTTGAACATGAAGAGTCTCTTGAGGTGGTTAGACTTGAAGGTCACGCTT 1689
Query 1851 ACTCACCTGAAGACATGGGCTTATCCCGGGATATGTATTTACTGCAGCTTTGTAGCGGCG 1910
||||||| ||||||||||| ||| | |||||||||||| | || |||||||||||||| |
Sbjct 1690 ACTCACCCGAAGACATGGGTTTAGCTCGGGATATGTATCTGCTACAGCTTTGTAGCGGTG 1749
Query 1911 TTGATGAAAATGTGGTTGGAGGTTGTGCTCAGCTTGTCTTTGCCCCAATCGATGAATCAT 1970
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1750 TTGATGAAAATGTGGTTGGAGGTTGTGCACAGCTTGTCTTTGCGCCTATCGATGAATCAT 1809
Query 1971 TTGCTGATGATGCACCTTTGCTTCCTTCTGGTTTCCGTGTCATACCACTCGACCAAAAAA 2030
||||||||||||||||||||||||||||||||||||| ||||||| || || || |||
Sbjct 1810 TTGCTGATGATGCACCTTTGCTTCCTTCTGGTTTCCGCATCATACCTCTTGAACAGAAAT 1869
Query 2031 CAAATCCGAATGATCATCAATCTGCAAGTCGAACACGGGATCTAGCATC-GTCCCTAGAT 2089
||| |||||| | | || ||||||| || || | |||| |||| || | | ||||
Sbjct 1870 CAACTCCGAACGGTG--CA-TCTGCAAACCGTACCCTGGATTTAGCCTCAG-CTTTAGAA 1925
Query 2090 GGTTCCAC-CAA-AACC-GATTC-G--GAAACAAA---CTCTAGA-TT--GGTC--T--T 2133
|| ||||| | || | | | | || |||| || || | || |||| | |
Sbjct 1926 GGATCCACACGTCAAGCAGGTGAAGCCGACCCAAATGGCTGTA-ACTTTAGGTCGGTACT 1984
Query 2134 AACAATAGCCTTCCAGTTCACGTTTGATAACCATTCCAGAGACAATGTTGCTACAATGGC 2193
||| ||||| ||||||||||| |||||||||||||| ||||||| ||||||| |||||||
Sbjct 1985 AACCATAGCATTCCAGTTCACATTTGATAACCATTCAAGAGACAGTGTTGCTTCAATGGC 2044
Query 2194 GA-GACAGTATGTGAGGAA-CGTTGTTGGTTCGATTCAGAGAGTGGCTCTAGCCATTACG 2251
| | ||||| || || || | | || || ||||||||||| || |||||||||||| |
Sbjct 2045 -ACGTCAGTACGTTAG-AAGCATAGTAGGATCGATTCAGAGGGTTGCTCTAGCCATTGCT 2102
Query 2252 CCTCGTCCTGGCTC-A--AT--G-C-AA-CT-T---CCCACTTCCCCTGAAGCTCTCACT 2299
|||||||||||||| | || | | || || | ||||||||||||||||||||||||
Sbjct 2103 CCTCGTCCTGGCTCCACTATCAGTCCAATCTCTGTTCCCACTTCCCCTGAAGCTCTCACT 2162
Query 2300 CTTGTCCGTTGGATCACCCGTAGTTACAGTATTCATACAGGTGCAGATCTGTTTGGAGCT 2359
|| |||||||||||| |||| |||||||| |||| || ||||||||||| |||||| ||
Sbjct 2163 CTGGTCCGTTGGATCTCCCGGAGTTACAGCCTTCACACTGGTGCAGATCTCTTTGGATCT 2222
Query 2360 GATTCTCAGTCCTGTGGAGGAGACACATTGCTTAAGCAACTCTGGGACCATAGTGATGCC 2419
|||||||| || |||| ||| ||||||||| | ||||||||| | || | ||||||
Sbjct 2223 GATTCTCAAACCAGTGG-GGA--CACATTGCTGCATCAACTCTGGAATCACACTGATGCA 2279
Query 2420 ATATTGTGCTGCTCCCTGAAAACTAATGCCTCACCGGTATTCACATTTGCAAACCAAGCT 2479
|| |||||||||||||| ||||| || || |||||||| |||||||| ||||||||| |
Sbjct 2280 ATCTTGTGCTGCTCCCTCAAAACAAACGCTTCACCGGTTTTCACATTCGCAAACCAAACC 2339
Query 2480 GGTTTAGACATGCTTGAAACTACACTTGTGGCACTTCAGGATATAATGCTCGACAAAACA 2539
|||||||||||||| ||||| || ||||| || ||||| || |||||||| ||||| ||
Sbjct 2340 GGTTTAGACATGCTGGAAACGACTCTTGTAGCCCTTCAAGACATAATGCTAGACAAGACC 2399
Query 2540 CTTGATGA-CTCTGGTCGTAGAGCTCTTTGCTCCGAGTTCGCCAAGATCATGCAGCAGGG 2598
||||| || | ||||||||| |||||||||||| |||||| ||||||||||||| |||||
Sbjct 2400 CTTGACGAAC-CTGGTCGTAAAGCTCTTTGCTCTGAGTTCCCCAAGATCATGCAACAGGG 2458
Query 2599 ATATGCGAATCTTCCGGCAGGAATATGTGTGTCGAGCATGGGCAG-ACCGGTTTCGTATG 2657
||||| |||||||||| ||| |||||| ||| |||||||| || | ||| || || |
Sbjct 2459 CTATGCTCATCTTCCGGCGGGAGTATGTGCGTCAAGCATGGGGAGGAT-GGTGTCTTACG 2517
Query 2658 AGCAAGCGACGGTGTGGAAAGTTGTTGATGACAACGAATCAAACCACTGCTTGGCTTTTA 2717
|||| || ||||||||||||||| |||| ||| | ||||||||||||||||| ||||| |
Sbjct 2518 AGCAGGCAACGGTGTGGAAAGTTCTTGAAGACGATGAATCAAACCACTGCTTAGCTTTCA 2577
Query 2718 CCCTCGTTAGTTGGTCGTTTGTTTGATGAA 2747
|||| | ||||||||| |||||| |||
Sbjct 2578 TGTTCGTGAATTGGTCGTTCGTTTGAAGAA 2607
> Ahg491408 jgi|Araly1|491408|fgenesh2_kg.7__841__AT4G32880.1
Length=3015
Score = 300 bits (162), Expect = 4e-80
Identities = 613/820 (75%), Gaps = 74/820 (9%)
Strand=Plus/Plus
Query 274 CGGCAAGTACGTTAGATACACGCCGGAACAAGTTGAAGCTCTTGAGAGAGTTTATGCTGA 333
||| |||||||| || ||||| || |||||||| |||||||| |||||| | || |||
Sbjct 420 CGGGAAGTACGTGAGGTACACTCCTGAACAAGTGGAAGCTCTGGAGAGACTCTACAATGA 479
Query 334 GTGTCCTAAACCTAGCTCTCTGAGAAGACAACAGCTTATTCGTGAATGTCCCATTCTCTG 393
||||||||||| |||||| || | | || || || || || |||||||| || ||||
Sbjct 480 CTGTCCTAAACCGAGCTCTATGCGCCGCCAGCAACTGATCCGGGAATGTCCTATCCTCTC 539
Query 394 TAACATCGAGCCTCGACAGATCAAAGTTTGGTTCCAGAATCGCAGATGTCGAGAGAAGCA 453
|||||||||||| |||||| ||||| ||||||||||| ||||| ||| |||| || ||
Sbjct 540 CAACATCGAGCCTAAACAGATAAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAAAAACA 599
Query 454 GAGGAAAGAGTCAG-CTCGTCTTC-AGACAGTGAA-CAGGAAGCTGA-GTGCTATGAACA 509
| |||||||| | | |||| |||| || | ||||| | ||||||| | | || |||||||
Sbjct 600 GCGGAAAGAGGC-GTCTCGACTTCAAG-CTGTGAATC-GGAAGCTAACG-GCAATGAACA 655
Query 510 AGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTC-CAACTTGGTTTATGAG 568
|||||||||||||||||||||| || ||||| |||||||| || || ||||||||| |||
Sbjct 656 AGCTTTTGATGGAAGAGAATGACCGCTTGCAAAAGCAAGTGTCTCA-CTTGGTTTACGAG 714
Query 569 AATGG--ATTCAT-GA-AACATCG--AATCCACACTGC--TTCTGGGACGACCACAGACA 620
|| | ||| | | |||||| || | || | || ||| | ||||| || |
Sbjct 715 AACAGCTATTT-TCGCCAACATCCTCAAAAC-CAGGGGAATT-TGGC-C-ACCACGGATA 769
Query 621 ACAGCTGTGAGTCTGTGGTCGT-GAGTGGTCAGCAACGTCAGCA-GCAAAACC-CAACAC 677
| ||||||||||| ||||| | ||||||||| || | || | | | || |||||
Sbjct 770 ATAGCTGTGAGTCAGTGGT-GACGAGTGGTCAACA-C--CA-CTTG-ACC-CCTCAACA- 821
Query 678 ATCAGCATCCTCAGCGTGATGTTAACAACCCAGCTA-ATC-TTCTCTCGATTGCGGAGGA 735
||||| | || | ||||| || | || ||| || || || | |||||||| ||
Sbjct 822 -TCAGC--C-TC-G--TGATGCTAGC--CCT-GCTGGATTATTGTC-C-ATTGCGGATGA 869
Query 736 GACCTTGGCGGAGTTCCTTTGC-AAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGA 794
|| || | |||||| ||| | ||||| || ||||| |||||||| |||||||| |||
Sbjct 870 AACTTTAACAGAGTTCATTT-CTAAGGCCACTGGAACCGCTGTCGAGTGGGTCCAAATGC 928
Query 795 TTGGGATGAAGCCTGGTCCGGATTCTATTGGTATCGTAGCTGTTTC--ACGCAACTGCA- 851
|||||||||||||||||||||||| || || ||||| ||| |||| ||| | ||||
Sbjct 929 CTGGGATGAAGCCTGGTCCGGATTCCATAGGAATCGTTGCTATTTCTCACGGA--TGCAC 986
Query 852 GTGGAATAGCAGCACGTGCCTGTGGCCTCGTGAGT-TTAGAACCCATGAAGG-TCGCTGA 909
| ||||| ||||| ||||| || ||||| ||| || || || |||| |||| |||| ||
Sbjct 987 G-GGAATCGCAGCCCGTGCTTGCGGCCTTGTGGGTCTT-GATCCCAC-AAGGGTCGCGGA 1043
Query 910 AATCCTCAAAG-ATC-GTCCATCTTGGTTCCGTGACTGTC-GATGTGTCGAGACTCTGAA 966
||||| |||| || | || | |||||| ||||| || | ||| | | || | | | ||
Sbjct 1044 GATCCT-AAAGGATAAG-CCTTGTTGGTTGCGTGATTG-CAGATCTCTAGATATTGTTAA 1100
Query 967 TGTTA-TAC-CCACTGGAAATGGTGGTACTATCGAGCTTGTCAACACT-CAGATTTATGC 1023
|| | | | |||||| ||||||||| || | || || || ||| | ||| |||| ||
Sbjct 1101 CGT-ACT-CTCCACTGCAAATGGTGGAACCCTTGAACTAATCTACA-TGCAGTTTTACGC 1157
Query 1024 TCCTACAACATTAGCAGC-AGCTCGTGACTTTTGGACGCT 1062
|| |||||||| || || |||||||||||| |||| |||
Sbjct 1158 GCCGACAACATTGGC-GCCAGCTCGTGACTTCTGGATGCT 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110842612950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5