BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30500.2
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473278 jgi|Araly1|473278|fgenesh2_kg.1__3232__AT1G30500.2 1371 0.0
Ahg482436 jgi|Araly1|482436|fgenesh2_kg.4__1496__AT2G34720.1 303 1e-81
Ahg887546 jgi|Araly1|887546|Al_scaffold_0481_2 291 9e-78
> Ahg473278 jgi|Araly1|473278|fgenesh2_kg.1__3232__AT1G30500.2
Length=945
Score = 1371 bits (742), Expect = 0.0
Identities = 863/920 (94%), Gaps = 13/920 (1%)
Strand=Plus/Plus
Query 58 TCGTCAGAGAAAATTGCAGAGAGAATTCTGCTTCGGACATTAAGCTCATGAGTCATGACT 117
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 32 TCGTCATTGAAAATTGCAGAGAGAATTCTCCTTCGGACATTAAGCTCATGAGTCATGACT 91
Query 118 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 151
Query 178 TCTCATTTCCAACCACCAATCCCTTCTGCAAGAAATTATGAATCAATTGTTACAAGTTTA 237
|||||||||||||||||||| ||| ||| ||||||||||||||| || | ||||||||||
Sbjct 152 TCTCATTTCCAACCACCAATTCCTCCTGGAAGAAATTATGAATCCATAGCTACAAGTTTA 211
Query 238 GTCTACTCAGACCCGGGGACT-ACAAATTCCATGGCACCTGGACAATATCCATATCCAGA 296
|||||||| || |||| || | ||| | | |||||||||||||||||||||||||||
Sbjct 212 GTCTACTCGGAACCGGTTCCTCAAAAACTGAA-GGCACCTGGACAATATCCATATCCAGA 270
Query 297 TCCTTACTACAGAAGCATATTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 356
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TCCTTACTACAGAAGCATCTTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 330
Query 357 GTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCATCTGATGCAGTCGAGGAACCTGT 416
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 331 GTTGATGGGAATGCAGCAACAAGGTGTTCCTTTACCATCTGATGCAGTTGAGGAACCTGT 390
Query 417 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGACAATCAAGAGCAAGACT 476
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 391 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGGCAATCTAGAGCAAGACT 450
Query 477 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCGTATTTGCATGAATCTCGGCATTT 536
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 451 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCATATTTACATGAATCACGGCATTT 510
Query 537 GCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGGTTTCTAAATGCCAAGAAGGA-GG 595
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 511 GCATGCGATAAGACGACCAAGAGGATGTGGCGGTCGGTTTCTAAATGCCAAGAAGGACGG 570
Query 596 ATGAGCATCACGAAGACAGTAGTCATGAAGAAAAATCCAACCTTAGCGCTGGTAAATCCG 655
||||||||||||||||||| ||||||||||| |||||||| ||| ||| ||||||||
Sbjct 571 C-GAGCATCACGAAGACAGTACTCATGAAGAAACTTCCAACCTCAGCTCTGATAAATCCG 629
Query 656 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCCTACAAGTAGCTTTGTTGTATTTT 715
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 630 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCATCCAAGTAGCTTTGTTGTATTTT 689
Query 716 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTTTAGTGTATGATATATACAAATCTTTGT 775
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 690 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTT-AGTGTATGATATATACAAATCTTTGT 748
Query 776 ATAAAGGTATAGATAGGTTCTTGGGAAGCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 835
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 749 AGAAAGGTATAGATAGGTTCTTGGGA-GCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 807
Query 836 TGTGATTATTAAATAAAACCCACCGAGGAA-AAAGGGAAATAAATAA-TGTCCATGATGT 893
||||||||||||||||||||||| |||||| ||||| |||||||||| |||| || ||||
Sbjct 808 TGTGATTATTAAATAAAACCCACTGAGGAAGAAAGG-AAATAAATAAATGTC-ATAATGT 865
Query 894 TTAGTTAAATA---CAATGCTACTGATATTGTTTTGTTATAAGAAATTTTGGTAATAAAA 950
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 866 TTAGTTAAATAGTACAATGCTACTTATATTGTTTTGTTGTAAGAAATTTTGGTAATAAAA 925
Query 951 CGAAGAATGGAAGAATCCAC 970
| || |||||||||||||||
Sbjct 926 CAAAAAATGGAAGAATCCAC 945
> Ahg482436 jgi|Araly1|482436|fgenesh2_kg.4__1496__AT2G34720.1
Length=968
Score = 303 bits (164), Expect = 1e-81
Identities = 400/508 (79%), Gaps = 39/508 (8%)
Strand=Plus/Plus
Query 102 CTCATGAGTCATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAA 161
||||||| |||||||||||||| | |||||||| |||||||||| || |||||||| |||
Sbjct 101 CTCATGAATCATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAA 160
Query 162 GCAAGAACAG-AGAGATTCTCATTTCCA-ACCACCA-ATCCCTTCTGCAAGAAATTATGA 218
| |||||| | |||||| || | | |||| || || ||||| | | ||| || ||
Sbjct 161 GAAAGAAC-GTCCAGATTCCCA-AACAAGACCA-CAGATTCCTTCAGGACGAAGTTCGGA 217
Query 219 ATCAATTGTTACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGG 278
||| |||| ||||| | |||| | | ||| || | ||||||||| |||
Sbjct 218 ATCTATTGATACAA---CA---AACTCTG--TC---TACT-CAGAGCCCATGGCACATGG 265
Query 279 ACAATATCCATATCCAGATCCTTACTACAGAAGCATATTTGCAC--C--GC----C-TCC 329
| ||| || |||||||||||||||||||||||||| ||| ||| | || | |||
Sbjct 266 GCTATACCCGTATCCAGATCCTTACTACAGAAGCATCTTTTCACAGCAAGCATATCTTCC 325
Query 330 ACAACCGTATACC-GGGGTAC-ATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCT 387
||| || ||| || ||||| | || | ||||| |||||| |||| || | ||| |||||
Sbjct 326 ACATCCCTAT-CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAACAGCCAGGAGTTCCA 383
Query 388 TTACCAT-CTGATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTAT 446
|| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTGCAATGC-GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTAT 442
Query 447 ACTAAGGCGCAGACAATCAAGAGCAAGACTTGAGTCTCAGAATA-A-AGTCATCAAGTCA 504
||| |||||||| ||||| | |||| ||||||| | | ||| | | || ||||||| ||
Sbjct 443 ACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCAC-GAA-ACAGAGCCATCAAGGCA 500
Query 505 C-GTAAGCCGTATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATG 563
| ||||| || ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 501 AAG-AAGCCATACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATG 559
Query 564 TGGCGGGCGGTTTCTAAATGCCAAGAAG 591
|||||| |||||||| ||||||||||||
Sbjct 560 TGGCGGACGGTTTCTCAATGCCAAGAAG 587
> Ahg887546 jgi|Araly1|887546|Al_scaffold_0481_2
Length=519
Score = 291 bits (157), Expect = 9e-78
Identities = 391/498 (79%), Gaps = 39/498 (8%)
Strand=Plus/Plus
Query 112 ATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAG 171
|||||||||||| | |||||||| |||||||||| || |||||||| |||| |||||| |
Sbjct 1 ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAAGAAAGAAC-G 59
Query 172 -AGAGATTCTCATTTCCA-ACCACCA-ATCCCTTCTGCAAGAAATTATGAATCAATTGTT 228
|||||| || | | |||| || || ||||| | | ||| || ||||| |||| |
Sbjct 60 TCCAGATTCCCA-AACAAGACCA-CAGATTCCTTCAGGACGAAGTTCGGAATCTATTGAT 117
Query 229 ACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGGACAATATCCA 288
|||| | |||| | | ||| || | ||||||||| ||| | ||| ||
Sbjct 118 ACAA---CA---AACTCTG--TC---TACT-CAGAGCCCATGGCACATGGGCTATACCCG 165
Query 289 TATCCAGATCCTTACTACAGAAGCATATTTGCAC--C--GC----C-TCCACAACCGTAT 339
|||||||||||||||||||||||||| ||| ||| | || | |||||| || |||
Sbjct 166 TATCCAGATCCTTACTACAGAAGCATCTTTTCACAGCAAGCATATCTTCCACATCCCTAT 225
Query 340 ACC-GGGGTAC-ATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCAT-CT 396
|| ||||| | || | ||||| |||||| |||| || | ||| ||||| || | || |
Sbjct 226 -CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAACAGCCAGGAGTTCCATTGCAATGC- 282
Query 397 GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGC 456
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 283 GATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTCAGGCGC 342
Query 457 AGACAATCAAGAGCAAGACTTGAGTCTCAGAATA-A-AGTCATCAAGTCAC-GTAAGCCG 513
|| ||||| | |||| ||||||| | | ||| | | || ||||||| || | |||||
Sbjct 343 AGGCAATCCCGGGCAAAACTTGAGGCAC-GAA-ACAGAGCCATCAAGGCAAAG-AAGCCA 399
Query 514 TATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGG 573
|| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 400 TACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATGTGGCGGACGG 459
Query 574 TTTCTAAATGCCAAGAAG 591
||||| ||||||||||||
Sbjct 460 TTTCTCAATGCCAAGAAG 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5