BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30510.2
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922113 jgi|Araly1|922113|scaffold_103394.1 1810 0.0
Ahg327454 jgi|Araly1|327454|fgenesh1_pm.C_scaffold_6002674 472 5e-132
> Ahg922113 jgi|Araly1|922113|scaffold_103394.1
Length=1187
Score = 1810 bits (980), Expect = 0.0
Identities = 1097/1153 (95%), Gaps = 9/1153 (1%)
Strand=Plus/Plus
Query 217 TCAGGCTGGTGCTGTCTCAGTTTCAATTGAAAACCAACGTTCTCTTAGAAGATCC-GTCT 275
||||||||||||||||||||||||||||| |||| ||||||||||||||||| || | ||
Sbjct 41 TCAGGCTGGTGCTGTCTCAGTTTCAATTGGAAACGAACGTTCTCTTAGAAGA-CCTGCCT 99
Query 276 TCAAGCAGAACAATAGCATAAGCTTCAACAGCAAGTCATGGTCATCTTCTTTAGCATTGA 335
|| | |||||||||||||||||||||| ||||||| ||||||||||| || ||| |||
Sbjct 100 TC-A--AGAACAATAGCATAAGCTTCAAGGGCAAGTCTTGGTCATCTTCCTTGGCACTGA 156
Query 336 ACCAGAAGACAACAAGCATAAGAGATGGGAAACGGTAC-CCGAGCACGACAATATGTATG 394
|||||||||||||| |||||||||||| ||||||||| || | |||||||||||| |||
Sbjct 157 ACCAGAAGACAACAGGCATAAGAGATGCAAAACGGTACACC-AACACGACAATATGCATG 215
Query 395 TCGGTTCAACAAACAAGTAGTTCCAAGGTTACTGTCTCTCCTATAGAGTTGGAAGACCCT 454
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 216 TCGGTTCAACAGACAAGTAGTTCCAAGGTTACTGTCTCTCCTATAGACTTGGAAGACGCT 275
Query 455 AAGGATCCTCCTTTGAACTTGTACAAACCCAAGGAGTCTTACACCGCTAAGATTGTCTCT 514
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 276 AAGGATCCTCCTTTGAACTTGTACAAACCCAAGGAGTCCTACACGGCTAAGATTGTCTCC 335
Query 515 GTGGAGCGAGTAGTTGGCCCGAAAGCCCCTGGAGAAACTTGTCATATCGTCATCGATCAT 574
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 336 GTGGAGCGAGTTGTTGGCCCAAAAGCCCCTGGAGAAACTTGTCATATCGTAATCGATCAT 395
Query 575 GATGGTAACCTTCCTTACTGGGAAGGACAGAGTTACGGTGTGATTCCTCCAGGTGAGAAC 634
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 396 GATGGTAACCTTCCTTACTGGGAAGGGCAGAGTTACGGTGTTATTCCTCCCGGTGAGAAC 455
Query 635 CCGAAGAAACCGGGAGCGCCACACAATGTGCGCCTTTACTCAATTGCATCAACAAGGTAC 694
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 456 CCGAAGAAACCGGGAGCTCCACACAATGTGCGCCTTTACTCGATTGCATCAACAAGGTAC 515
Query 695 GGAGATTTCTTTGACGGTAAAACAGCGAGTTTGTGTGTACGTAGAGCTGTTTATTACGA- 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GGAGATTTCTTTGACGGTAAAACAGCGAGTTTGTGTGTACGTAGAGCTGTTTATTACGAT 575
Query 754 CCCTGAGACTGGAAAAGAAGATCCTTCAAAGAACGGAGTCTGCAGCAACTTCCTATGTGA 813
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 576 CCC-GAGACTGGAAAAGAAGATCCTTCAAAGAACGGAGTCTGCAGCAACTTCTTATGTGA 634
Query 814 TTCAAAGCCCGGTGACAAGATTCAAATCACCGGTCCATCTGGGAAGGTAATGCTATTACC 873
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 635 TTCAAAGCCCGGAGACAAGATTCAAATCACTGGTCCATCTGGGAAGGTAATGCTATTACC 694
Query 874 CGAGAGTGATCCAAACGCGACACACATAATGATAGCCACGGGAACAGGAGTGGCTCCATA 933
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 695 CGAGACTGATCCAAACGCGACACACATAATGATAGCCACGGGAACAGGAGTGGCTCCTTA 754
Query 934 CAGAGGCTACTTACGTCGAATGTTCATGGAAAACGTCCCAAACAAGACATTTAGCGGCTT 993
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 CAGAGGCTACCTACGTCGAATGTTCATGGAAAACGTCCCAAACAAGACATTTAGCGGCTT 814
Query 994 AGCTTGGCTCTTCTTAGGCGTGGCCAACACCGATAGCCTTCTCTATGACGAAGAGTTTAC 1053
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 815 AGCTTGGCTCTTCTTAGGCGTGGCCAACACCGATAGCCTTCTCTATGACGATGAGTTTAC 874
Query 1054 CAAGTACCTAAAAGACCATCCAGACAACTTTAGGTTCGACAAGGCATTGAGCAGAGAGGA 1113
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 875 CAAGTACTTAAAAGACCATCCAGAGAACTTTAGGTTCGACAAGGCATTGAGCAGGGAGGA 934
Query 1114 GAAGAACAAGAAAGGTGGAAAGATGTACGTGCAGGACAAGATTGAAGAATATAGTGATGA 1173
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 935 GAAGAACAAGAAAGGTGGAAAGATGTATGTGCAGGACAAGATTGAGGAGTATAGTGATGA 994
Query 1174 GATCTTCAAGCTTTTGGACAATGGAGCTCATATTTACTTCTGTGGGCTTAAAGGAATGAT 1233
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GATCTTCAAGCTATTGGACAATGGAGCTCATATTTACTTCTGTGGGCTTAAAGGAATGAT 1054
Query 1234 GCCTGGGATTCAAGATACACTTAAGAGAGTTGCAGAAGAGAGAGGTGAGAGCTGGGACTT 1293
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1055 GCCTGGGATTCAGGATACACTTAAGAGAGTTGCAGAGGAGAGAGGTGAGAGCTGGGACTC 1114
Query 1294 GAAGCTTTCTCAGCTCAGGAAGAACAAGCAGTGGCACGTTGAAGTCTATTGAGCTCttta 1353
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 GAAGCTTTCTCAGCTTAGGAAGAACAAGCAGTGGCACGTTGAAGTCTATTGAGCTCTTTA 1174
Query 1354 tttgtatttgctg 1366
||||| |||||||
Sbjct 1175 TTTGTTTTTGCTG 1187
> Ahg327454 jgi|Araly1|327454|fgenesh1_pm.C_scaffold_6002674
Length=1068
Score = 472 bits (255), Expect = 5e-132
Identities = 467/566 (83%), Gaps = 28/566 (5%)
Strand=Plus/Plus
Query 794 TGCAGCAACTTCCTATGTG--AT-TCAAAGCCCGGTGA-CAAGATTCAAATCACCGGTCC 849
||||||||||| || |||| || |||| ||||| || ||| || ||||||| |||||
Sbjct 517 TGCAGCAACTT-CT-TGTGCAATGCCAAA-CCCGGCGATAAAG-TTAAAATCACTGGTCC 572
Query 850 ATCTGGGAAGGTAATGCTATTACCCG-AGAGTGATCCAAACGCGACACACATAATGATAG 908
|||||| ||||||||||| ||||| | ||| ||| ||||| || || ||||||||||| |
Sbjct 573 ATCTGGAAAGGTAATGCTTTTACCTGAAGA-TGACCCAAAAGCTACTCACATAATGATTG 631
Query 909 CCACGGGAACAGGAGTGGCTCCATACAGAGGCTACTTACGTCGAATGTTCATGGAAAACG 968
| || ||||| ||||| |||||||||||||| ||| |||| || ||||| ||||| ||||
Sbjct 632 CTACTGGAACCGGAGTTGCTCCATACAGAGGATACCTACGGCGTATGTTTATGGAGAACG 691
Query 969 TCCCAAA---CAAGACATTTAG-CGG-CTTAGCTTGGCTCTTCTTAGGCGTGGCCAACAC 1023
| ||||| |||| ||| | || | | || ||||||||| | || ||||| ||| |
Sbjct 692 TTCCAAATTTCAAG---TTT-GATGGAC-TCGCATGGCTCTTCCTCGGTGTGGCTAACTC 746
Query 1024 CGATAGCCTTCTCTATGACGAAGAGTTTACCAAG-TACCTAAAAGACCATCCAGACAACT 1082
|| || ||||||||||| ||||| ||| || | ||||| || ||| ||||||| || |
Sbjct 747 AGACAGTCTTCTCTATGATGAAGAATTTGCC-GGTTACCTCAAGGACTATCCAGAGAA-T 804
Query 1083 TT-AGGTTCGACAAGGCATTGAGCAGAGAGGAGAAGAACAAGAAAGG-TGGAAAGATGTA 1140
|| | || |||||| || |||||||||| ||||||||||||||||| ||||| |||||
Sbjct 805 TTCAAGTACGACAAAGCGCTGAGCAGAGAAGAGAAGAACAAGAAAGGAGGGAAA-ATGTA 863
Query 1141 CGTGCAGGACAAGATTGAAGAATATAGTGATGAGATCTTCAAGCTTTTGGACAATGGAGC 1200
||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||
Sbjct 864 TGTGCAGGACAAGATTGAAGAATACAGTGACGAGATCTTCAAACTTCTGGACAATGGAGC 923
Query 1201 TCATATTTACTTCTGTGGGCTTAAAGGAATGATGCCTGGGATTCAAGATACACTTAAGAG 1260
|||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 924 TCATATTTACTTTTGCGGGCTTAAAGGAATGATGCCCGGGATTCAAGACACTCTTAAGAG 983
Query 1261 AGTTGCAGAAGAGAGAGGTGAGAGCTGGGA-CTTGAAGCTTTCTCAGCTCAGGAAGAACA 1319
|| || |||||| |||| || |||||||| | ||| ||| ||||||||||||||||||
Sbjct 984 GGTCGCTGAAGAGCGAGGCGAAAGCTGGGAGC-AGAAACTTACTCAGCTCAGGAAGAACA 1042
Query 1320 AGCAGTGGCACGTTGAAGTCTATTGA 1345
|||||||||| |||||||| ||||||
Sbjct 1043 AGCAGTGGCATGTTGAAGTGTATTGA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5