BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30515.1 Length=627 Score E Sequences producing significant alignments: (Bits) Value Ahg473282 jgi|Araly1|473282|fgenesh2_kg.1__3236__AT1G30515.1 588 2e-167 > Ahg473282 jgi|Araly1|473282|fgenesh2_kg.1__3236__AT1G30515.1 Length=524 Score = 588 bits (318), Expect = 2e-167 Identities = 396/432 (92%), Gaps = 11/432 (3%) Strand=Plus/Plus Query 47 AAAATGGCCGCACACAAAACCAGTGAGTATCCACCGTTGATTTCAATGCTGATCATGTTC 106 |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| || | Sbjct 1 AAAATGGCTGCACACAAAACCAGTGAGTTTCCACCGTTGATTTCAATGATGATCGTG-T- 58 Query 107 ATCATCGTCCTAGAATCAACGATTATCAATGCAAGAGAATTACGACCGTCCGATCACGGT 166 ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct 59 -TCATCGTCCTAGAATCAACAAGTATCAATGCAAGAGAATTACGACCCTCCGATCACGGT 117 Query 167 CTCGAGTACTACTACGAACCAGGCGAGTCATCAGAAATGACGTCATTCTTTGGACCACCT 226 || ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 118 CTTGAGTATTACTACGAACCAGGCGAGTCATCGGAAATGACGTCATTCTTCGGACCACCT 177 Query 227 TCTTCAAATGATCTAACGTCGAT-ATCATCACCGTCTAGCTCGATATTGCCGAGTGCGGT 285 ||||||||||| || || ||| | ||||||||||||||||||||||| ||||||||||| Sbjct 178 TCTTCAAATGAGCTTACCTCG-TCGTCATCACCGTCTAGCTCGATATTACCGAGTGCGGT 236 Query 286 GAAGTCTCCAAT---GAAGACG-C-T-ATCAAAAGATCAGGATGATGATCGCGTGATGAA 339 ||| |||||||| ||||| | | | ||||||||||||||||||||||| ||||||||| Sbjct 237 GAAATCTCCAATGAAGAAGATGTCGTCATCAAAAGATCAGGATGATGATCACGTGATGAA 296 Query 340 TCACGTGCTGGTTGTGGGCAGCTTGGTGTGTGGACTCTCCGGCGTGGCTTTGATGGTCGC 399 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 297 TCACGTGCTGGTTGTGGGCAGCTTGGTGTGTGGAGTCTCCGGCGTAGCTTTGATGGTCGC 356 Query 400 TTCTGCTCTCATTTATTTTCTCGGTTACCCGAAAACGCAAAATTCCTCTGTTAATTGTGA 459 ||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| Sbjct 357 TTCTGCTCTCATTTATTTTCTTGGATACCCGAAAACACAAAATTCCTCAGTTAATTGTGA 416 Query 460 TCACATTCATAA 471 |||||||||||| Sbjct 417 TCACATTCATAA 428 Score = 82.4 bits (44), Expect = 4e-15 Identities = 66/75 (88%), Gaps = 7/75 (9%) Strand=Plus/Plus Query 540 AATAAAGATGTTATCATGTATTATTGTAAGAAAACAGATACTAATAATCTTTTGGTTGGT 599 ||||||||||||||||| | ||| || |||||||||||||||| |||||||||||| Sbjct 457 AATAAAGATGTTATCATCTG--ATT-TA-GAAAACAGATACTAAT---CTTTTGGTTGGT 509 Query 600 TATTGATTATGTTTG 614 ||||||||||||||| Sbjct 510 TATTGATTATGTTTG 524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22949996034 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5