BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G30515.1

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473282 jgi|Araly1|473282|fgenesh2_kg.1__3236__AT1G30515.1         588    2e-167


> Ahg473282 jgi|Araly1|473282|fgenesh2_kg.1__3236__AT1G30515.1
Length=524

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 396/432 (92%), Gaps = 11/432 (3%)
 Strand=Plus/Plus

Query  47   AAAATGGCCGCACACAAAACCAGTGAGTATCCACCGTTGATTTCAATGCTGATCATGTTC  106
            |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| || | 
Sbjct  1    AAAATGGCTGCACACAAAACCAGTGAGTTTCCACCGTTGATTTCAATGATGATCGTG-T-  58

Query  107  ATCATCGTCCTAGAATCAACGATTATCAATGCAAGAGAATTACGACCGTCCGATCACGGT  166
             ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||
Sbjct  59   -TCATCGTCCTAGAATCAACAAGTATCAATGCAAGAGAATTACGACCCTCCGATCACGGT  117

Query  167  CTCGAGTACTACTACGAACCAGGCGAGTCATCAGAAATGACGTCATTCTTTGGACCACCT  226
            || ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  118  CTTGAGTATTACTACGAACCAGGCGAGTCATCGGAAATGACGTCATTCTTCGGACCACCT  177

Query  227  TCTTCAAATGATCTAACGTCGAT-ATCATCACCGTCTAGCTCGATATTGCCGAGTGCGGT  285
            ||||||||||| || || ||| |  ||||||||||||||||||||||| |||||||||||
Sbjct  178  TCTTCAAATGAGCTTACCTCG-TCGTCATCACCGTCTAGCTCGATATTACCGAGTGCGGT  236

Query  286  GAAGTCTCCAAT---GAAGACG-C-T-ATCAAAAGATCAGGATGATGATCGCGTGATGAA  339
            ||| ||||||||   ||||| | | | ||||||||||||||||||||||| |||||||||
Sbjct  237  GAAATCTCCAATGAAGAAGATGTCGTCATCAAAAGATCAGGATGATGATCACGTGATGAA  296

Query  340  TCACGTGCTGGTTGTGGGCAGCTTGGTGTGTGGACTCTCCGGCGTGGCTTTGATGGTCGC  399
            |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  297  TCACGTGCTGGTTGTGGGCAGCTTGGTGTGTGGAGTCTCCGGCGTAGCTTTGATGGTCGC  356

Query  400  TTCTGCTCTCATTTATTTTCTCGGTTACCCGAAAACGCAAAATTCCTCTGTTAATTGTGA  459
            ||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct  357  TTCTGCTCTCATTTATTTTCTTGGATACCCGAAAACACAAAATTCCTCAGTTAATTGTGA  416

Query  460  TCACATTCATAA  471
            ||||||||||||
Sbjct  417  TCACATTCATAA  428


 Score = 82.4 bits (44),  Expect = 4e-15
 Identities = 66/75 (88%), Gaps = 7/75 (9%)
 Strand=Plus/Plus

Query  540  AATAAAGATGTTATCATGTATTATTGTAAGAAAACAGATACTAATAATCTTTTGGTTGGT  599
            ||||||||||||||||| |   ||| || ||||||||||||||||   ||||||||||||
Sbjct  457  AATAAAGATGTTATCATCTG--ATT-TA-GAAAACAGATACTAAT---CTTTTGGTTGGT  509

Query  600  TATTGATTATGTTTG  614
            |||||||||||||||
Sbjct  510  TATTGATTATGTTTG  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22949996034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5