BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30520.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313692 jgi|Araly1|313692|fgenesh1_pm.C_scaffold_1002472 1591 0.0
> Ahg313692 jgi|Araly1|313692|fgenesh1_pm.C_scaffold_1002472
Length=1746
Score = 1591 bits (861), Expect = 0.0
Identities = 981/1041 (94%), Gaps = 0/1041 (0%)
Strand=Plus/Plus
Query 698 GTGTATTTGCACACGTCTCCATTAGTTCATATCGGCGGTCTGTCATCAGCTATGGCCATG 757
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GTGTATTTGCATACATCACCATTAGTTCATATCGGCGGTCTGTCATCAGCTATGGCCATG 765
Query 758 CTAATGGTTGGAGCTTGCCATGTTCTGCTGCCCAAGTTTGATGCCAAAACAGCTCTTCAA 817
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 766 CTAATGGTTGGTGCTTGCCATGTTCTGCTGCCCAAGTTTGATGCTAAAACAGCCCTTCAA 825
Query 818 GTTATGGAACAAAACCATATAACTTGCTTCATCACCGTCCCAGCTATGATGGCTGATCTT 877
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GTTATGGAACAAAACCGTATAACTTGCTTCATCACCGTCCCAGCTATGATGGCTGATCTT 885
Query 878 ATTCGTGTCAACAGGACAACGAAAAATGGAGCTGAAAACCGCGGTGTGAGAAAGATACTA 937
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 886 ATTCGTGTCAACAGGACAAAGAATAATGGAGCTGAAAACCGCGGTGTGAGAAAGATACTA 945
Query 938 AACGGAGGTGGATCTTTATCAAGCGAACTCCTTAAAGAAGCTGTGAACATCTTCCCATGT 997
|| ||||||||||||||||||| | |||| ||| |||||||||| || ||||||||||||
Sbjct 946 AATGGAGGTGGATCTTTATCAACCCAACTTCTTCAAGAAGCTGTAAAAATCTTCCCATGT 1005
Query 998 GCGAGGATACTTTCAGCATATGGGATGACAGAGGCGTGCTCTTCGCTGACCTTCATGACT 1057
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1006 GCGAAAATACTTTCAGCATATGGGATGACAGAGGCATGCTCTTCGCTGACCTTCATGACT 1065
Query 1058 CTCCATGATCCAACACAAGAGTCTTTTAAGGTGACTTATCCTTTGCTTAACCAACCAAAG 1117
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||
Sbjct 1066 CTCCATGATCCAACACAAGAGTCTTTTAAGGTGACATATCCTTTGGTTAATCAACCGAAG 1125
Query 1118 CAAGGCACATGTGTTGGCAAGCCTGCCCCTCATATCGAACTGATGGTTAAACTCGACGAA 1177
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1126 CAAGGCACATGTGTTGGCAAGCCTGCGCCTCATATCGAACTGATGATTAAACTCGACGAA 1185
Query 1178 GATTCATCGAGGGTCGGGAAAATTCTAACGCGCGGACCACACACTATGCTTAGATATTGG 1237
|||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 1186 AATTCATCGAGGGTCGGGAAAATTCTAACTCGCGGACCACACACAATGCTTGGATATTGG 1245
Query 1238 GGTCATCAAGTAGCTCAAGAAAATGTTGAAACATCAGAATCCAGAAGCAATGAAGCTTGG 1297
|||||| || | | |||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1246 GGTCATAAACTTGTTCAAGAAAGTGTTGCATCATCAGAATCCAGAAGCAATGAAGCTTGG 1305
Query 1298 CTTGACACAGGTGATATCGGGGCCTTTGATGAGTTTGGTAACTTATGGCTTATAGGCCGG 1357
||||||||||||||||| || |||||||||||||||| |||||||| |||||||| |||
Sbjct 1306 CTTGACACAGGTGATATTGGAACCTTTGATGAGTTTGGGAACTTATGCCTTATAGGTCGG 1365
Query 1358 TCCAATGGCCGAATCAAGACTGGAGGCGAGAATGTTTACCCCGAAGAGGTGGAAGCTGTT 1417
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1366 TCCAATGGCCGAATCAAAACTGGAGGCGAGAATGTTTACCCCGAAGAGGTCGAAGCTGTT 1425
Query 1418 CTAGTAGAGCATCCAGGGATTGTTTCTGCTGTGGTGATAGGCGTCATTGATACTCGTCTT 1477
|||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 1426 CTAGTAGAGCATCCTGGGATTGTTTCTGCCGTGGTTATAGGCGTCATTGATGTTCGTCTT 1485
Query 1478 GGAGAGATGGTCGTTGCTTGTGTTCGTTTACAGGAGAAATGGATATGGTCTGATGTTGAA 1537
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 1486 GGAGAGATGGTCGTTGCTTGTGTTCGTTTAGAGGAGAATTGGATATGGTCTGATATTGAA 1545
Query 1538 AACCGTAAAGGAAGTTTCCAACTGTCAAGTGAGACACTCAAACATCATTGCAGAACACAG 1597
||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1546 AACCGCAAACGAAGTTTCCAACTGTCAAGTGAGACACTCAAACATCATTGTAGAACACAG 1605
Query 1598 AACCTAACCGGGTTTAAGATACCGAAGAGGTTTGTCCGATGGGAGAAGCAGTTTCCGTTG 1657
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1606 AACCTAACCGGGTTTAAGATGCCGAAGAGGTTTGTCCAATGGGAGAAGCAGTTTCCGTTG 1665
Query 1658 ACAACAACTGGGAAAGTGAAAAGAGATGAAGTTCGAAGACAAGTTTTGTCTCATTTCCAA 1717
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1666 ACAACAACTGGGAAAGTGAAAAGAGATGAAGTTCGAAGACAAGTTATGTCTCATTTCCAA 1725
Query 1718 ATCATGACTAGCTCTCTCTGA 1738
||| ||||||||||||| |||
Sbjct 1726 ATCTTGACTAGCTCTCTATGA 1746
Score = 929 bits (503), Expect = 0.0
Identities = 598/645 (93%), Gaps = 2/645 (0%)
Strand=Plus/Plus
Query 56 ATGGCTAATCACTCTCGGCCTCACATCTGCCAGTGTTTGACTCGGCTAGCCTCCGTCAAA 115
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1 ATGGCTAATCACTCTCGGCCTCACATCTGTCAGTGTTTGACTCAGCTAGCCTCCGTCAAA 60
Query 116 CGGAACGCCGTCGTCACAGTCTACGGAAACCGGA-AGCGCACCGGCAGGGAGTTCGTTGA 174
|||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||| ||
Sbjct 61 CGGAACGCCGTCGTTACAGTGTACGGAAACCGGATA-CGCACCGGCAGGGAGTTCGTAGA 119
Query 175 CGGCGTACTGAGCCTTGCCGCCGGACTGATTCGTCTCGGCCTCCGAAACGGTGATGTCGT 234
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 120 CGGCGTACTGAGCCTCGCCGCCGGACTGATTCGTCTCGGCCTCCGCAACGGAGATGTCGT 179
Query 235 CTCTATTGCTGCTTTTAACAGTGATTTGTTCTTGGAGTGGTTATTAGCTGTTGCATTGGT 294
||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TTCTGTTGCTGCTCTTAACAGTGATTTGTTCTTGGAGTGGTTATTGGCTGTTGCATTGGT 239
Query 295 TGGAGGAGTAGTTGCTCCTTTGAATTACAGATGGAGCTTGAAAGAAGCAAAAATGGCAAT 354
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TGGAGGAATAGTTGCTCCTTTGAATTACAGATGGAGCTTGAAAGAAGCAAAGATGGCAAT 299
Query 355 GCTGCTAGTAGAACCTGTGCTTTTGGTTACTGATGAGACATGTGTCTCGTGGTGCATTGA 414
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |
Sbjct 300 GCTGCTAGTAGAACCTGTGCTTTTGGTTACTGATGAAACATGTGTCTCTTGGTGCGTTCA 359
Query 415 TGTTCAAAATGGAGATATACCTTCCTTGAAATGGCGTGTGTTGATGGAGTCTACTTCAAC 474
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 360 TGTTCAGAATGGAGATATACCTTCGTTGAAATGGCGTGTGTTGATGGAGTCTACCTCTAC 419
Query 475 AGATTTTGCAAATGAACTTAACCAGTTTTTGACAACCGAGATGCTTAAACAGCGTACACT 534
||| || || ||||| ||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 420 AGAATTAGCGAATGATGATAATCAGTTTTTGACAACCGAGATGATTAAACAGCGTACGTT 479
Query 535 GGTGCCTTCCTTAGCAACGTATGCTTGGGCTTCTGATGATGCTGTTGTTATATGTTTCAC 594
||||||||||||| ||| ||| ||||||||| |||||||||| ||||| ||||| |||||
Sbjct 480 GGTGCCTTCCTTACCAATGTACGCTTGGGCTCCTGATGATGCCGTTGTGATATGCTTCAC 539
Query 595 TTCTGGTACAACGGGAAGACCCAAGGGTGTGACGATAAGCCACTTGGCTTTCATAACACA 654
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 540 TTCTGGTACAACGGGAAGACCCAAGGGTGTCACCATAAGCCACTTGGCTTTCATCACACA 599
Query 655 GTCTCTAGCTAAGATTGCTATTGCTGGCTACGGTGAGGATGATGT 699
||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 600 GTCTCTAGCTAAGATTGCTATTGTTGGATATGGTGAGGATGATGT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5