BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30540.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473284 jgi|Araly1|473284|fgenesh2_kg.1__3238__AT1G30540.1 1997 0.0
> Ahg473284 jgi|Araly1|473284|fgenesh2_kg.1__3238__AT1G30540.1
Length=1233
Score = 1997 bits (1081), Expect = 0.0
Identities = 1185/1236 (96%), Gaps = 3/1236 (0%)
Strand=Plus/Plus
Query 12 ATATTTCCTGAAAAAGTCAACAAAGACAGAGAGATATATATCTTTCGACGAAATTGAAAA 71
||||||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||||||
Sbjct 1 ATATTTCCTAAAAAAGTCAAC-AAGGCAGAGAG--ATATATCTTTAGACGAAATTGAAAA 57
Query 72 TTTCAGGTATCCTTGATCTCCGATCGAAAGGGCACTAATTTCTTACTGGCGTGTCTCAAG 131
||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 TTTGAGGTAACCTTGATCTCCGATCGAAAGGGCACTAATTTCTCACTGGCGTGTCTCAAG 117
Query 132 TCTCGACGACCCATTTCTCCATCTTCCTTGACCTCATCTGGGTTGGTTTTTATTGGTGAA 191
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 118 TCTCGACGACCCATTTCTCCATTTTCCTTGATCTCATCTGGGTTGGTGTTTATTGGTGAA 177
Query 192 TGAGGAATCCACATAGCAATGGAAACCTTCGGAAGCTTGAAGCTGATGGAGGAGGAGAAG 251
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 TGAGGAATCCACATAGCAATGGAAACCTTCGGAAGCTTCAAGCTGATGGAGGAGGAGAAG 237
Query 252 CCACGGAGGAGAACGGTTTCGTAAACGGCGTAATCTTGGGCCTTGACGGTGGCGCCACCT 311
||||||| |||||||| |||||| | || || ||||| ||||||||||||||||||||||
Sbjct 238 CCACGGAAGAGAACGGCTTCGTAGATGGTGTTATCTTAGGCCTTGACGGTGGCGCCACCT 297
Query 312 CAACGGTATGCGTTTGCGTTCCAtttttttCGTTTGGTGAACGTTTCCCGGATCCTCTTC 371
| |||||||||||||||||||||||||| | ||||| || ||||||||||| |||||||
Sbjct 298 CCACGGTATGCGTTTGCGTTCCATTTTTCCCATTTGGAGATCGTTTCCCGGAGCCTCTTC 357
Query 372 CGATCCTCGGTCGTGCCGTCGCCGGTTGCACCAATCGCAACAGCGTTGGAGAAACTGCAG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGATCCTCGGTCGTGCCGTCGCCGGTTGCACCAATCGCAACAGCGTTGGAGAAACTGCAG 417
Query 432 CAAGGGATTCACTAGAGCAAGTGATTTCTGAGGCACTTGTACAGTCTGGTTTTGATAAAT 491
| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 418 CGAGGGATTCACTAGAGCAAGTGATTTCTGAGGCACTTGTACAATCGGGTTCTGATAAAT 477
Query 492 CAGATGTTCGCGGTGTATGCTTAGGTGTTTCAGGTGTTAATCATCCCTCAGACCAGGAAA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAGATGTTCGCGGTGTATGCTTAGGTGTTTCAGGTGTTAATCATCCCTCAGACCAGGAAA 537
Query 552 AGATAGAAAATTGGATAAGGGACATGTTTCCTAGTCATGTCAAGGTATATGTTCAGAATG 611
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 538 AGATAGAAAATTGGATAAGGGACATCTTCCCTAGTCACGTCAAGGTATATGTTCAGAATG 597
Query 612 ATGCTATAGTGGCTTTAGCTAGTGGAACCATGGGAAAGCTCCATGGCTGCGTTCTAATCG 671
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 598 ATGCTATAGTGGCTTTAGCTAGTGGAACAATGGGAAAGCTCCATGGTTGTGTTCTAATCG 657
Query 672 CTGGTACAGGATGTATAGCTTATGGCTTTGATGAAGATGGCAAGGAGGCTAGGGCATCTG 731
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 CTGGTACAGGATGTATAGCCTATGGCTTTGATGAAGATGGCAAGGAGGCTAGGGCTTCTG 717
Query 732 GTGGTGGACCAATCTTAGGTGATTGGGGAAGTGGCTATGGAATTGCTGCACAGGCCTTAA 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 718 GTGGTGGACCAATCTTAGGTGATTGGGGAAGTGGCTATGGAATTGCTGCACAGGCCTTGA 777
Query 792 CGGCGGTGATTAGAGCTCATGATGGTCGTGGCCCACAAACGATGCTTACAAGTACCATCT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CGGCGGTGATTAGAGCTCATGATGGTCGTGGCCCACAAACGATGCTTACAAGTACCATCT 837
Query 852 TAAAAGCACTTGGACTCTCCTCTCCAGACGAACTCATCGGTTGGACTTACGCTGATCCAT 911
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 TAAAAGCACTTGGACTTTCCTCTCCAGACGAACTCATCGGGTGGACTTACGCTGATCCAT 897
Query 912 CTTGGGCACGTATCGCTGCTCTTGTTCCTCAAGTAGTCTCTTGTGCAGAAGCTGGTGATG 971
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 CTTGGGCACGTATCGCTGCTCTTGTTCCTCAAGTAGTATCTTGTGCAGAAGCTGGTGATG 957
Query 972 AAATTTCAGATAAGATCTTGGTTGATGCAGCTGAGGATTTAGCTCTCAGTGTGAAAGCTG 1031
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 958 AAATTTCAGATAAGATCTTGGTTGATGCAGCTGAGGATTTAGCTCTAAGTGTGAAGGCTG 1017
Query 1032 TTGTACAGAGACTTGGTTTATGTGGCAAAGATGGGACAGCTTCTTTCCCGGTTGTAATGG 1091
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 TTGTACAGAGACTTGGTTTATGTGGCGAAGATGGGACAGCTTCTTTCCCGGTTGTAATGG 1077
Query 1092 TAGGCGGAGTCCTTAACGCTAATCAGAAATGGGACATTGGAAAAGAAGTCTCTAAGCGCA 1151
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1078 TGGGCGGAGTCCTAAACGCTAATCAGAAATGGGACATTGGAAAAGAAGTCTCAAAGCGCA 1137
Query 1152 TTAACAGATACTTTCCAGGGGCTCAAACTATCATACCAAAGGTAGAGCCAGCTGTTGGAG 1211
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1138 TTAACAGATACTTTCCCGGGGCTCAAACAATCATACCAAAGGTAGAGCCAGCTGTTGGAG 1197
Query 1212 CAGCATTGTTGGCCATGAACTTCTTATCAAGTTAAC 1247
||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAGCATTGTTGGCCATGAACTTCTTATCAAGTTAAC 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5