BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30550.1
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336158 jgi|Araly1|336158|fgenesh1_pg.C_scaffold_1002723 1131 0.0
> Ahg336158 jgi|Araly1|336158|fgenesh1_pg.C_scaffold_1002723
Length=702
Score = 1131 bits (612), Expect = 0.0
Identities = 673/703 (96%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 685 ATGACGAGATCGATGAAGCTCAAGAAACGATCGCGCTTGAAGAAA-GAGGTAAAATCAAC 743
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1 ATGACGAGATCGATGAAGCTCAAGAAACGATCGCGCTTGAAGAAAGGA-ATAAAATCAAC 59
Query 744 GATAGAGAAAGATAATGGTAGGAGACATAAAATCACTAAGTACTGGATTCAACGTTACGA 803
|||| ||||||| |||||| ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 60 GATAAAGAAAGAAAATGGTTCGAGTCATAAGATCACTAAGTACTGGATTCAACGATACGA 119
Query 804 TCTCTTCTCAAGATATGACCAAGGTATCGAAATGGATGAAGAAGGATGGTACTCTGTGAC 863
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 120 TCTCTTCTCAAGATACGACCAAGGTATCGAATTGGATGAGGAAGGATGGTACTCTGTGAC 179
Query 864 TCCTGAAGAAATCGCAATCAAACAAGCTCAGAGATATCGTGGCAAAGTGGTGATTGATTG 923
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 180 TCCTGAAGAAATCGCAATCAAACAAGCTCAGAGATGTCGTGGTAAAGTGGTCATTGATTG 239
Query 924 CTTCTCAGGCGTTGGTGGTAACACTATTCAATTTGCTAAAGTATGTTCTTCTGTTGTTGC 983
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 CTTCTCAGGCGTTGGTGGTAACACTATTCAATTCGCTAAAGTATGTTCTTCTGTTGTTGC 299
Query 984 TATTGACATTGATCCGGTGAAAGTTGAATTGGCGATGAACAATGCCATGGTTTATGGAGT 1043
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 TATTGACATTGATCCGGTGAAAGTTGAATTGGCGATGAACAATGCAATGGTTTATGGAGT 359
Query 1044 TGCTAATCGTGTTGATTTTGTCATTGGTGATTTCATACAATTAGCTCCTTCTCTCAAAGG 1103
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 360 TGCTAATCGTGTTGATTTTGTCATTGGTGATTTCATCCAATTAGCTCCATCTCTTAAAGG 419
Query 1104 AGATGTAGTGTTTCTTTCACCACCATGGGGAGGACCAATGTATAGAGATTTTGAGAGTTA 1163
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 AGATGTAGTGTTTCTTTCACCACCATGGGGAGGACCAATGTATAGAGATGTTGAGAGTTA 479
Query 1164 CAATTTGGATATGCTTCAACCAAGAGACGGGTACTCATTGTTTCAGATTGCTCAGTCCAT 1223
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAAGTTGGATATGCTTCAACCAAGAGACGGGTACTCATTGTTTCAGATTGCTCAGTCCAT 539
Query 1224 TACACCTAACATCATTATGTTTCTACCGCGAAATGTTGATTTAGCACAAGTGGAAGAACT 1283
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 TACGCCTAACATCATTATGTTTCTACCGCGAAATGTTGATTTAGCGCAAGTGGAAGAACT 599
Query 1284 AGCTTGGCTCTCGTCGCCTCCGTTAAATCTTGAGATAGAAGAAAACTTTGTTGGAGGCAG 1343
||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 600 AGCTTGGCTCTCGTCCCCTCCGCTAACTCTTGAGATAGAAGAAAACTTTGTTGGAGGCAG 659
Query 1344 AATGAAAGCTGTAACAGCTTATTTTAGTTGCAATGCAGTTTAG 1386
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 AATGAAAGCCGTAACAGCTTATTTTAGTTGCAATGCAGTTTAG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76980385145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5