BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30560.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922121 jgi|Araly1|922121|scaffold_103402.1 2479 0.0
Ahg492311 jgi|Araly1|492311|fgenesh2_kg.7__1744__AT4G25220.1 1081 0.0
> Ahg922121 jgi|Araly1|922121|scaffold_103402.1
Length=1573
Score = 2479 bits (1342), Expect = 0.0
Identities = 1470/1533 (96%), Gaps = 3/1533 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCAGGTATTCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCAGGTATTCAT 82
Query 61 TTCCTAGAACGTTTCAGGCGTTCAGGAAAACTCTCTTTCAAGCAATATCAAGCAATGGTC 120
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 83 TTCCTAGAACGTTTCAAGCGTTCAGGCAAACTCTCTTTCAAGCAGTATCAAGCAATGGTC 142
Query 121 TTTGTCTTGACCTTCATTGCTTATATTGCCTTCCACGCAACACGAAAGCCTAACAGCATC 180
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 143 TTTGTCTTGACCTTCATCGCTTATATTGCCTTCCACGCAACCCGAAAGCCTAACAGCATC 202
Query 181 GTCAAAGGAACACTCTCTGAACAACCAACCGGACATTTCAAGGGTGCAGATAAAGGTGGA 240
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 203 GTCAAAGGAACGCTCTCTGAACAACCAACCGGACATTTCAAGGGGGCAGGTAAAGGTGGA 262
Query 241 TGGGCTCCTTTCGATGGTCCAGATGGAACAGCTCTGCTTGGACAAATCGATTTGGCTTTC 300
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 263 TGGGCTCCTTTCGATGGTCCTGATGGAACAGCTTTGCTTGGACAAATCGATTTGGCTTTC 322
Query 301 CTCTCTGTTTACGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATCGTTTGGACCTC 360
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 323 CTCGCTGTTTATGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATCGTCTGGACCTC 382
Query 361 AGGACGTTTCTAACAATAGGTATGGTCGGGACAGGAGTGTGTACTGCTCTGTTTGGAGTC 420
|||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 383 AGGACGTTTCTAACTATAGGTATGATCGGGACAGGAGTGTGTACCGCTCTATTTGGAGTC 442
Query 421 GCTTTTTGGGCCAATATCCATGCTTTCTACTATTTCCTTGCGATTCAGACATTGGCAGGG 480
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GCTTTCTGGGCAAATATCCATGCTTTCTACTATTTCCTTGCGATTCAGACATTGGCAGGT 502
Query 481 TGGTTTCAGTCTATTGGATGGCCTTGCGTGGTTGCGGTTTTGGGAAACTGGTTTGATAAG 540
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 503 TGGTTTCAGTCTATTGGATGGCCTTGCGTGGTGGCGGTTTTGGGGAACTGGTTTGATAAG 562
Query 541 AAGAGGAGAGGAGTCATTATGGGTGTTTGGAGTGCTCATACATCATTAGGGAATATCATT 600
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 563 AAGAGGAGAGGAGTCATTATGGGTATTTGGAGTGCTCATACATCAATAGGGAATATCATT 622
Query 601 GGGACTTTAATCGCTACGGGGCTTTTGAAGTTTGGTTGGGGATGGTCTTTTGTTGGTCCG 660
||||||||||| || || || ||||| || || ||||||||||||||||||||||||||
Sbjct 623 GGGACTTTAATAGCGACCGGCCTTTTAAAATTCGGTTGGGGATGGTCTTTTGTTGGTCCC 682
Query 661 GCTTTGCTCATTACGTTTCTTGGCATTGTGGTTTACCTATTCTTGCCTGTGAACCCTCAT 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 683 GCTTTGCTCATTACGTTTCTTGGCATTGTGATTTACCTATTCTTGCCTGTGAATCCAGTT 742
Query 721 GCTGTTGAAGCTGAGAGAGATGGGAGTGAAGTTGATTCCACAATGAGACTCGGTGACACC 780
||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 743 GCTGTTGAATCTGAGAGAGATGGAACTGAAGTTGATTCCACAATGAGACTCGGTGACACC 802
Query 781 ATTACAGAGAGTTTCTTAAGCTCTAGGACGAGTACTGGATTCGATAGAAGAGCTGTCGGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 803 ATTACAGAGAGTTTCTTAAGCTCTAGGACGAGTACTGGATTCGATAGAAGAGCCGTCGGG 862
Query 841 TTCTTAGCGGCTTGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTCTGTCTCTTCTTCACC 900
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 863 TTCTTAGCCGCATGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTTTGTCTCTTCTTCACC 922
Query 901 AAACTGGTCTCTTACACATTCCTCTATTGGCTTCCTTTCTACGTAAGCCAGACTGAGATA 960
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 923 AAATTGGTCTCTTACACTTTCCTCTATTGGCTTCCTTTCTATGTAAGCCAGACTGAGATA 982
Query 961 GGAGGAGAACAATTGTCACAGGAGACATCGGGAAACTTATCGACACTCTTCGATGTTGGA 1020
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 983 GGAGGAGAGCATTTGTCACAAGAGACATCGGGAAACTTATCGACACTCTTCGATGTTGGA 1042
Query 1021 GGCGTTGTTGGAGGAATCTTAGCCGGATATTTCTCTGACCAGCTCGACGGGAGAGCAATT 1080
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1043 GGCGTTGTTGGAGGAATCTTAGCCGGATATTTCTCTGATCAGCTCGACGGGAGAGCAATT 1102
Query 1081 ACAGCCGGAGGATTCATCTACTTAACAATCCCAGCTCTGTTCCTCTACAGAATATACGGT 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1103 ACAGCCGGAGGATTCATCTACTTGACAATCCCAGCTCTGTTCCTCTACAGAATCTACGGT 1162
Query 1141 CATGTCTCAATGACAATCAATATCATCCTCATGTTCGTAGCTGGATTATTTGTTAATGGA 1200
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1163 CATGTCTCAATGACAATCAATATCATCCTCATGTTCATAGCTGGATTGTTTGTTAATGGA 1222
Query 1201 CCTTACGCTCTCATCACAACCGCGGTTGCAGCTGATCTCGGTACTCACAAGTCGCTTAAA 1260
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CCTTACGCTCTCATCACAACTGCGGTTGCAGCTGATCTCGGTACTCACAAGTCGCTTAAA 1282
Query 1261 GGCAATGCAAGGGCTTTGGCTACAGTGACTGCTATTATAGATGGAACAGGATCAGTTGGT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 GGCAATGCAAGGGCTTTGGCTACAGTGACTGCTATTATAGATGGAACAGGATCAGTTGGT 1342
Query 1321 GCAGCCATTGGACCTGTTCTTACAGGTTATATCGCTGCGATTAGTTGGGATGCTGTGTTT 1380
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1343 GCAGCTATTGGACCTGTTCTTACAGGTTATATCGCTGCGATTAGCTGGGATGCTGTGTTT 1402
Query 1381 TACATGTTGATGACTGCAGCTTTGATCTCTGGATTGTTGCTCACTACGCTTATTATAGAA 1440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TACATGTTGATGACTGCGGCTTTGATCTCTGGATTGTTGCTCACTACGCTTATTATAGAA 1462
Query 1441 GAAGTGAAAACTTTGTTGTATGGATCTTCTGAAGAAGATCATGAAGTCGCTGCTGCTTCT 1500
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1463 GAAGTGAAAACTTTGTTGTATGGATCATCTGAAGAAGAT---GAAGTCGCTGCTGCTTCT 1519
Query 1501 ACATCAAGACCTCCCATTGATGTCCTCATATGA 1533
|||||||||||||||||||||||||||||||||
Sbjct 1520 ACATCAAGACCTCCCATTGATGTCCTCATATGA 1552
> Ahg492311 jgi|Araly1|492311|fgenesh2_kg.7__1744__AT4G25220.1
Length=1686
Score = 1081 bits (585), Expect = 0.0
Identities = 1194/1484 (80%), Gaps = 57/1484 (4%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCAGGTATTCAT 60
|||||||| ||||||||||| | ||||| ||||||||| || ||| ||||||||
Sbjct 109 ATGGCGTCATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGGGGTATTCAG 168
Query 61 TTCCTAGAAC-GTTTCAGGCGTTCAGGAAAACTCTCTTTCAAGCAATATCAAGCAATGGT 119
||| | |||| |||| | ||||||||||| |||||| ||||||||||| ||||| | ||
Sbjct 169 TTCTTGGAACGGTTT-AAGCGTTCAGGAAGACTCTCCTTCAAGCAATACCAAGCCCTTGT 227
Query 120 CTTTGTCTTGACCTTCATTGCTTATATTGCCTTCCACGCAACACGAAAGCCTAACAGCAT 179
||| |||||||||| | || || | |||||||| || | |||||||| || |||||
Sbjct 228 CTTCATCTTGACCTTTGTCGCCTACGTCGCCTTCCATGCTGCTCGAAAGCCCAATAGCAT 287
Query 180 CGTCAAAGGAACACTCTCTGAACAACCAACCGGACATTTCAAGGGTGCAGAT-AAAGGTG 238
||||| ||||| || | | || | || |||| || || ||||| |
Sbjct 288 TGTCAAGGGAACGCT-T-T----------CC-G-CA--TCAA-----CA-ATCAAAGGCG 325
Query 239 GATGGGCTCCTTTCGATGGTCCAGATGGAACAG-CTCTGCTTGGACAAATCGATTTGGCT 297
| ||||||||||| ||||| || |||||| ||| || ||||||| || ||||| |||| |
Sbjct 326 GTTGGGCTCCTTTTGATGGACCCGATGGACCAGCCT-TGCTTGGGCAGATCGACTTGGTT 384
Query 298 TTCCTCTCTGTTTACGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATCGTTTGGAC 357
||||||||||| || |||||||| ||||||||||| || || ||||| |||||||||||
Sbjct 385 TTCCTCTCTGTCTATGCGGTTGGGATGTTTGTGGCGGGCCACTTGGGAGATCGTTTGGAT 444
Query 358 CTCAGGACGTTTCTAACAATAGGTATGGTCGGGACAGGAGTGTGT-ACTGCTCTGTTTGG 416
|||||||||||||| || || || ||| ||||||| || | | | || ||||| |||||
Sbjct 445 CTCAGGACGTTTCTGACTATCGGAATGATCGGGACCGGCCT-TTTCACAGCTCTATTTGG 503
Query 417 AGTCGCTTTTTGGGCCAATATCCA-TGCTTTCTACTATTTCCTT-GCGATTCA-GACATT 473
||||| || ||||| ||| |||| || ||||||||||| ||| ||| |||| | | |
Sbjct 504 GGTCGCATTCTGGGCAAATTTCCACAGC-TTCTACTATTT-CTTGGCGGTTCAGGTTA-T 560
Query 474 GGCAGGGTGGTTTCAGTCTATTGGATGGCCTTGCGTGGTTGCGGT-TTTGGGAAACTGGT 532
||| |||||||||||||| || || |||||||| || || || || | ||| |||||||
Sbjct 561 GGCGGGGTGGTTTCAGTCGATAGGTTGGCCTTGTGTTGTGGCCGTGCTCGGG-AACTGGT 619
Query 533 TTGATAAGAAGAGGAGAGGAGTCATTATGGGTGTTTGGAGTGCTCATACATCATTAGGGA 592
| || |||||||| |||||| | |||||||||||||||||||||| || || | || |
Sbjct 620 TCGACAAGAAGAGAAGAGGAATGGTTATGGGTGTTTGGAGTGCTCACACTTCCCTCGGTA 679
Query 593 ATATCATTGGGACTTTAATCGCTA-CGGGGCT--TTTGAAGTTTGGTTGGGGATGGTCTT 649
| ||| ||| || | ||||| | | ||||| || | | | ||| ||||| ||||| |
Sbjct 680 ACATCGCAGGGTCTCTGATCGC-ATCTGGGCTGCTTAG-A-TATGGGTGGGGTTGGTCAT 736
Query 650 TTGTTGGTCCGGCTTTGCTCATTACGTTTCTTGGCATTGTGGTTTACCTATTCTTGCCTG 709
|| |||| |||||||||||||| || |||||||| || || |||||||| |||||||| |
Sbjct 737 TTCTTGGCCCGGCTTTGCTCATGACTTTTCTTGGGATCGTTGTTTACCTTTTCTTGCCGG 796
Query 710 TGAACCCT-CATGCTGTTGAAGCTGAGAGAGATGGGAGTGAAGTTGATTCCACAATGAGA 768
|||| ||| || | ||||| |||||||||||||| | |||| |||| ||||| |||||
Sbjct 797 TGAATCCTCCA-ACCGTTGAGGCTGAGAGAGATGGAACTGAAATTGACTCCACCATGAGG 855
Query 769 CTCGGTGACACCATTACAGAGAGTTTCTTAAG-CTCTAGGACGAGTACTGGATTCGATAG 827
||||||||||||||||||||||| ||||| | ||||| | ||||||||||||||||||
Sbjct 856 CTCGGTGACACCATTACAGAGAGCTTCTT-GGAATCTAGAATGAGTACTGGATTCGATAG 914
Query 828 -AAGAGCTGTCGGGTTCTTAGCGGCTTGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTCT 886
||| || ||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 915 AAAG-GCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTCT 973
Query 887 GTCTCTTCTTCACCAAACTGGTCTCTTACACATTCCTCTATTGGCTTCCTTTCTACGTAA 946
| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 974 GCCTCTTCTTCACCAAGTTGGTCTCATACACATTCCTCTACTGGCTTCCTTTCTACGTCA 1033
Query 947 GCCAGA-C-TGAGATAGGAGGAGAACAATTGTCACAGGAGACATCGGGAAACTTATCGAC 1004
|||| | | ||| | |||||||| | |||| |||||||||| |||||||| || ||
Sbjct 1034 GCCACAACATGA--TCGGAGGAGAGTACCTGTCTGAGGAGACATCAGGAAACTTGTCAAC 1091
Query 1005 ACTCTTCGATGTTGGAGGCGTTGTTGGAGGAATCTTAGCCGGATATTTCTCTGACCAGCT 1064
| |||||||||||||||| |||||||| || ||||||||||||| | ||||| || ||
Sbjct 1092 AATCTTCGATGTTGGAGGTGTTGTTGGTGGGGTCTTAGCCGGATACATGTCTGATCAACT 1151
Query 1065 CGACGGGAGAGCAATTACAGCCGGAGGATTCATCTACTTAACAATCCCAGCTCTGTTCCT 1124
| |||| ||||| || ||||| | ||||||||| ||||| ||||||||||||| |||||
Sbjct 1152 CAACGGCAGAGCGATCACAGCAGCAGGATTCATGTACTTGGCAATCCCAGCTCTTTTCCT 1211
Query 1125 CTACAGAATATACGGTCATGTCTCAATGACAATCAATATCATCCTCATGTTCGTAGCTGG 1184
||||||| | | || ||| ||||| |||| |||||| |||||||||||||| || | ||
Sbjct 1212 CTACAGAGTCTTGGGACATATCTCATTGACCATCAATGTCATCCTCATGTTCATATCAGG 1271
Query 1185 ATTATTTGTTAATGGACC-TTACGCTCTCATCACAACCGCGGT-TGCAGCTGATCTCGGT 1242
| | || | | |||||| || |||||||||||||| || || | |||||||||||||
Sbjct 1272 AGTCTTCATCATTGGACCATTT-GCTCTCATCACAACAGCTGTCT-CAGCTGATCTCGGA 1329
Query 1243 ACTCACAAGTCGCTTAAAGGCAATGCAAGGGCTTTGGCTACAGTGACTGCTATTATAGAT 1302
|| ||||| || || ||||||||||| ||||||||||||||||| || ||||| |||||
Sbjct 1330 ACACACAAATCTCTCAAAGGCAATGCCAGGGCTTTGGCTACAGTCACAGCTATCATAGAC 1389
Query 1303 GGAACAGGATCAGTTGGTGCAGCCATTGGACCTGTTCTTACAGGTTATATCGCTGCGATT 1362
|| |||||||| || ||||| || |||||||| || || || ||||| ||| ||||||||
Sbjct 1390 GGTACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTTACATCTCTGCGATT 1449
Query 1363 AGTTGGGATGCTGTGTTTTACATGTTGATGACTGCAGCTTTGATCTCTGGATTGTTGCTC 1422
|| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1450 AGCTGGGACGCAGTGTTTTACATGTTGATGACTGCGGCTTTGATCTCTGGATTGTTGCTC 1509
Query 1423 ACTACGCTTATTATAGAAGAAGTGAAAACTTTGTTGTATGGATC 1466
|||| || || |||| |||||| || ||||||||| ||||||
Sbjct 1510 ACTAAACTAATCATAGCAGAAGTCAAGGCTTTGTTGTTTGGATC 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5