BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30580.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922123 jgi|Araly1|922123|scaffold_103404.1 2134 0.0
> Ahg922123 jgi|Araly1|922123|scaffold_103404.1
Length=1228
Score = 2134 bits (1155), Expect = 0.0
Identities = 1199/1221 (98%), Gaps = 0/1221 (0%)
Strand=Plus/Plus
Query 62 TCAAGCTCGAGACTTTGAGAAAGATGCCTCCGAAAGCCAAAGCTAAAGATGCAGGTCCCG 121
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAAGCTCGACACTTTGAGAAAGATGCCTCCGAAAGCCAAAGCTAAAGATGCAGGTCCCG 60
Query 122 TAGAGAGGCCTATTCTTGGCCGTTTCTCTTCTCACCTCAAGATCGGAATTGTTGGGTTAC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGAGAGGCCTATTCTTGGCCGTTTCTCTTCTCACCTCAAGATCGGAATTGTTGGGTTAC 120
Query 182 CAAATGTTGGAAAATCTACTCTTTTCAACACTCTTACAAAGCTTTCAATTCCAGCTGAGA 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CAAATGTTGGAAAATCTACTCTTTTCAACACTCTTACAAAGCTTTCTATTCCAGCTGAGA 180
Query 242 ATTTCCCCTTTTGTACCATTGAGCCTAATGAGGCACGTGTGAATATCCCCGATGAGAGGT 301
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTTCCCTTTTGTACCATTGAGCCTAATGAGGCACGTGTGAATATCCCCGATGAGAGGT 240
Query 302 TCGATTGGCTTTGCCAAACTTACAAGCCTAAGAGTGAGATTCCAGCTTTCTTGGAAATTC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGATTGGCTTTGCCAAACTTACAAGCCTAAGAGTGAGATTCCAGCTTTCTTGGAAATTC 300
Query 362 ATGACATTGCTGGGCTTGTTAGAGGAGCTCATGAAGGACAGGGTCTTGGAAACAACTTCT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGACATTGCTGGGCTTGTTAGAGGAGCTCATGAAGGACAGGGTCTTGGAAACAACTTCT 360
Query 422 TGTCCCATATTCGTGCAGTTGATGGAATTTTCCATGTTTTACGTGCTTTTGAAGATGCTG 481
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 361 TGTCTCATATTCGTGCAGTTGATGGAATTTTCCATGTCTTACGTGCTTTCGAAGATGCTG 420
Query 482 ATATTATCCATGTCGACGATATCGTGGATCCTGTTAGAGATTTGGAGACCATTACTGAAG 541
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATATTATCCATGTTGATGATGTCGTGGATCCTGTTAGAGATTTGGAGACCATTACTGAAG 480
Query 542 AGTTGCGGCTAAAGGATATTGAATTTGTTGGAAAGAAGATTGATGATGTCGAGAAGAGCA 601
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 AGTTGCGGCTAAAGGATATTGAATTCGTTGGAAAGAAGATTGATGATGTCGAGAAGAGCA 540
Query 602 TGAAGAGGAGCAATGACAAGCAGCTGAAAATAGAACTTGAGCTCTTGCAAAAGGTAAAAG 661
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 TGAAGAGGAGCAATGACAAGCAGCTAAAAATAGAACTTGAGCTCTTGCAAAAGGTAAAAG 600
Query 662 CTTGGCTAGAAGATGGTAAGGATGTCCGTTTTGGGGACTGGAAAACAGCTGATATCGAGA 721
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTGGCTAGAAGATGGAAAGGATGTCCGTTTTGGGGACTGGAAAACAGCTGATATCGAGA 660
Query 722 TTTTGAACACTTTCCAATTGCTTTCTGCAAAGCCCGTTGTTTACTTGATTAACCTGAATG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TTTTGAACACTTTCCAATTGCTTTCTGCAAAGCCCGTTGTTTACTTGATTAACATGAATG 720
Query 782 AGAGAGACTATCAGAGGAAGAAAAACAAGTTCTTGCCAAAGATTCATGCCTGGGTTCAAG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAGAGACTATCAGAGGAAGAAAAACAAGTTCTTGCCAAAGATTCATGCCTGGGTTCAAG 780
Query 842 AACACGGTGGTGATACTATGATTCCTTTCAGTGGTGTGTTTGAAAGGAGTCTCGCTGATA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AACACGGTGGTGATACTATGATTCCTTTCAGTGGTGTGTTTGAAAGGAGTCTCGCTGATA 840
Query 902 TGGCCCCAGATGAAGCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGGCCCCAGATGAAGCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGA 900
Query 962 GGATCATCAAAACTGGATTTTCAGCAATTAACCTCATATACTTCTTTACAGCAGGGCCTG 1021
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 901 GGATCATCAAAACTGGATTTTCAGCGATTAACCTCATATATTTCTTTACAGCTGGGCCTG 960
Query 1022 ATGAGGTGAAGTGCTGGCAAATAAGACGGCAGTCAAAGGCTCCTCAAGCTGCAGGGGCCA 1081
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 ATGAGGTGAAGTGCTGGCAAATACGACGGCAGTCAAAGGCTCCTCAAGCTGCAGGGGCCA 1020
Query 1082 TTCATACTGATTTTGAGAGAGGATTTATTTGTGCTGAGGTCATGAAATTCGAGGATCTCA 1141
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 TTCATACTGATTTCGAGAGAGGATTTATTTGTGCTGAGGTCATGAAATTTGAGGATCTCA 1080
Query 1142 AGGAACTTGGCAATGAACCTGCAGTCAAGGCCGCAGGAAAATACAGACAGGAGGGTAAAA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1081 AGGAACTTGGCAATGAACCTGCAGTCAAGGCCGCAGGAAAATACAGACAGGAGGGCAAGA 1140
Query 1202 CATATGTTGTTCAGGATGGAGATATCATTTTCTTCAAGTTCAATGTTTCCGGTGGTGGGA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CATATGTTGTTCAGGATGGAGATATCATTTTCTTCAAGTTCAATGTTTCCGGTGGTGGGA 1200
Query 1262 AGAAATGAGATCCATCCGTCT 1282
|||||||||||||||| ||||
Sbjct 1201 AGAAATGAGATCCATCTGTCT 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5