BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30600.1
Length=2842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473289 jgi|Araly1|473289|fgenesh2_kg.1__3243__AT1G30600.1 4364 0.0
Ahg952041 jgi|Araly1|952041|scaffold_32500002.1 1074 0.0
Ahg354793 jgi|Araly1|354793|fgenesh1_pg.C_scaffold_7001966 584 1e-165
> Ahg473289 jgi|Araly1|473289|fgenesh2_kg.1__3243__AT1G30600.1
Length=2804
Score = 4364 bits (2363), Expect = 0.0
Identities = 2666/2813 (95%), Gaps = 18/2813 (1%)
Strand=Plus/Plus
Query 16 ctctctctttctctttcccctttcttcttctGAGA-TACGCTTCTCTACTCCACTGCCAT 74
|||||||||||||||||| || ||||||||||||| |||| |||||||||| ||| ||||
Sbjct 1 CTCTCTCTTTCTCTTTCCTCTGTCTTCTTCTGAGATTACGTTTCTCTACTCTACTTCCAT 60
Query 75 GGAGCTCTAATGGGTCTCTGCAATTTTCATTCTTTTCCTCTTTTCTTCTGAGAATTTCAG 134
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GGAGCTCTAATGGGTCTCTGCAATTTCCATTCTTTTCCTCTTTTCTTCTGAGAATTTCAG 120
Query 135 CTCAAGAACCATGGATGAGTCTTCTCTTGTTCGTTTTGTGTTCCTTCTCTGTTTGGTTTC 194
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CTCAAGAACCATGGAGGAGTCTTCTCTTGTTCGTTTTGTGTTCCTGCTCTGTTTGGTTTC 180
Query 195 GTCGTCTGTGTTCTGTTTGGCTGAGTCTGACCAAAACGCAACCGTTTCTTCTGCTGTTTA 254
|||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||
Sbjct 181 GTCGTCTGTGTTCTGTTTGGATGAGTCTGACCAAAACCCAACCACGTCTTCCGCTGTTTA 240
Query 255 CATTGTTACTCTCAAGGACCGTCCATCT-GTTCATTTCTCCGGCAGAGAATCGAGTGACT 313
||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 241 CATAGTTACTCTCAAGGACCGTCCAT-TAGTTCATTTCTCCGGCAGAGAATCGAGTGACT 299
Query 314 CTAAACACAG-CCTTACCGCTACTTCGTCCCAAATTTACAGAACATTGAACCGAAGTGCT 372
| |||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 300 CCAAACAC-GTCCTTACCGCTACTTCATCCCAAATTTACAGAACATTGAACAGAAGTGCT 358
Query 373 TCTATTATTAGAGTTCACGATTCATTGCTGAGAAATGTATTGAGAAAGGAGAATTACCTT 432
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 359 TCTATCATTAGAGTTCACGATTCTTTGCTGAGAAAAGTATTGAGAAAGGAGAATTATCTT 418
Query 433 AAGCTTTATAGTTACCACTATCTTATCAATGGGTTTTCCGCGGTTCTTACTCGAAAACAG 492
||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 419 AAGCTGTACAGTTACCACTATCTCATCAATGGGTTTTCCGCGGTTCTTACTCGAAAGCAG 478
Query 493 GCTGATAGACTTGCAGCTAGAGAAGAAGTGGAAAATGTGGTTCTGGACTTTCTGGTCGAG 552
|||||||||||||| ||||||||||||||||| ||||||||| |||| |||| ||| |||
Sbjct 479 GCTGATAGACTTGCGGCTAGAGAAGAAGTGGACAATGTGGTTTTGGATTTTCCGGTTGAG 538
Query 553 AAAGCAACTACTCACACACCACAGTTCTTAGGTTTGCCTCGTGGAGCTTGGCTCCGTGAT 612
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAGCAACTACTCACACACCGCAGTTCTTAGGTTTGCCTCGTGGAGCTTGGCTCCGTGAT 598
Query 613 GGAGGCTCTGAATATGCAGGAGAAGGAGTTGTTATAGGCTTTATTGATACTGGAATTGAT 672
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 GGAGGCTCTGAATATGCAGGAGAAGGAGTTGTTATAGGGTTTATTGATACTGGAATTGAT 658
Query 673 CCCACTCATCCTAGTTTCAGTGACAAAATCTCGGGGCATACATATTCGGTCCCTCCTCAC 732
||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 659 CCCACTCATTCTAGTTTTAGTGACAAAATCCCGGGGCATACATATTCGATCCCTCCTCGG 718
Query 733 TTTACTGGCGTCTGTGAAGTTACCATTGGTTTCCCGCCCGGTTCTTGCAATAGGAAACTC 792
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 TTTACTGGCGTCTGCGAAGTTACCATTGGTTTCCCGCCCGGTTCTTGCAATAGGAAGCTC 778
Query 793 ATTGGAGCACGCCATTTTGCTGAGTCTGCTCTCAGTAGAGGAGTCTTGAATTCATCTCAG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTGGAGCACGCCATTTTGCTGAGTCTGCTCTCAGTAGAGGAGTCTTGAATTCATCTCAG 838
Query 853 GATGATGCTTCACCATTTGATGGTGAAGGGCATGGCACGCACACAGCTTCTGTTGCAGCT 912
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GACGATGCTTCGCCATTTGATGGTGAAGGGCATGGCACGCACACAGCTTCTGTTGCAGCT 898
Query 913 GGGAATCACGGGATCCCGGTGGTAGTTGCGGGTCATCGCCTTGGAAATGCTAGCGGGATG 972
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 899 GGGAATCACGGGATCCCGGTGGTAGTTGCCGGTCATCACCTTGGAAATGCTAGCGGGATG 958
Query 973 GCTCCTCGTGCTCATATTGCTATCTACAAGGCATTGTATAAGAGGTTTGGAGGCTTTGCT 1032
||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 959 GCTCCTCGTGCTCATATTGCTGTTTACAAGGCATTGTATAAGAGGTTTGGAGGTTTTGCA 1018
Query 1033 GCAGATATCATTGCAGCCATAGATCAGGCGGCTCAAGATGGAGTTGACATAATAAACTTA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCAGATATCATTGCAGCCATAGATCAGGCGGCTCAAGATGGAGTTGACATAATAAACTTA 1078
Query 1093 TCAATCACACCAAATAGACGTCCTCCTGGTATCGCTACGTTCTTTAACCCAATCGATATG 1152
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1079 TCAATCACACCAAATAGACGTCCTCCTGGTATTGCTACGTTCTTCAACCCGATCGATATG 1138
Query 1153 GCATTGCTTTCAGCTGTGAAAGCCGGGATCTTTGTAGTGCAAGCAGCTGGAAACACAGGA 1212
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 GCATTGCTTTCAGCTGTGAAAGCAGGGATCTTTGTAGTGCAAGCAGCTGGAAACACAGGA 1198
Query 1213 CCAGCTCCTAAGAGCATGTCTTCCTTCAGTCCATGGATCTTCACAGTAGGAGCTACATCT 1272
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1199 CCAGCTCCTAAGAGCATGTCTTCCTTTAGTCCATGGATCTTCACAGTAGGAGCTACATCT 1258
Query 1273 CATGATAGAGTATATAGTAACTCGATAATCCTCGGAAATAATGTCACTATTCCTGGTGTT 1332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 CATGATAGAGTATATAGTAACTCGATAATCCTCGGAAATAATGTCACTATTCCTGGAGTT 1318
Query 1333 GGACTCGCATCTGGTACAAGAATAATGCATAAACTTGTTTTAGCTACACATGCGCTTCGC 1392
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 1319 GGACTCGCATCTGGTACAAGAACAATGCACAAACTTGTTTTAGCTACACATGCGCTCCGC 1378
Query 1393 AATGGTACAACTGTTATGGATGCTATATATGTTGGGGAATGCCAAGATTCAAGTAGCTTC 1452
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AATGGTACAACCATTATGGATGCTATATATGTTGGGGAATGCCAAGATTCAAGTAGCTTT 1438
Query 1453 GATCAGAAGCTGGTGCAAGGAAAGATCCTTGTCTGTAGTTATACAGTACGATTCATTCTC 1512
||| ||||||||||||| |||||||||||||||||||| |||||||| || ||||| |||
Sbjct 1439 GATGAGAAGCTGGTGCATGGAAAGATCCTTGTCTGTAGCTATACAGTTCGGTTCATCCTC 1498
Query 1513 GGTGTCTCAACCATCAAACAAGCATTACTTACAGCTAAGAACTTAACAGCAGCAGGCCTT 1572
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 1499 GGTGTCTCAACCATCAAACAAGCCTTAATAACAGCTAAGAACTTAACAGCAGCAGGCCTT 1558
Query 1573 GTCTTCTATATAGATCCTTCTGCCACCGGTTTTCAGATGACTTCAAGTCCAATGGATATA 1632
|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 1559 GTCTTCTATATAGATCCTTCAGCCACCGGTTTTCAGATGACTTCAACTCCGATGGATATA 1618
Query 1633 CCGGGAATTCTAATATCCTCCCCCCAAGATTCTCAGGCTTTACTCCGGTATTACAATTCT 1692
||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1619 CCGGGAATTTTAATCTCCTCCCCTCAATATTCTCAGGCTTTACTCCGGTATTACAATTCT 1678
Query 1693 TCTCTGTTGAGGGAAAATGGTTCAGGGAAGATTGTTGGGTCTGCGTCTGTTGCTAAAATT 1752
|||||||||||||||||||||||||| || || ||||||||||| || ||||||| ||||
Sbjct 1679 TCTCTGTTGAGGGAAAATGGTTCAGGCAAAATAGTTGGGTCTGCATCAGTTGCTAGAATT 1738
Query 1753 GTTGGTGGCATGAGGCCTACCTATGGCATTACAGCTCCCAAGGTCATGTATTTCTCTGCT 1812
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1739 GTTGGTGGCATGAAGCCTACCTATGGCATTACTGCTCCCAAGGTCATGTATTTCTCTGCT 1798
Query 1813 AGGGGACCTGACCCAGAAGATGATTCTTTCGTTGATGCTGATATAATGAAACCCAACTTA 1872
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AGAGGACCTGACCCAGAAGATGATTCTTTCGTTGATGCTGATATAATGAAACCCAACTTA 1858
Query 1873 GTAGCTCCCGGAAACGCGATATGGGGAGCTTGGAGTCCTCTTGGCATTGGTACAAATGAT 1932
|||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 1859 GTAGCTCCCGGAAATGCGATATGGGGCGCTTGGAGTCCTCTTGCCATTGGTACAACCGAT 1918
Query 1933 TTTCAAGGTGAACGTTTTGCGATGGAATCGGGGACAAGCATGTCTGCTCCACATGTAACC 1992
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TTTCAAGGTGAACGATTTGCAATGGAATCGGGGACAAGCATGTCTGCTCCACATGTAAC- 1977
Query 1993 GGG-ATTGCGGCGCTCATCAAGCAGAAGTTCCCACATTTCACTCCTGCAGCCATTGCATC 2051
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1978 GGGTATTGCGGCTCTCATCAAGCAAAAGTTCCCACATTTCACTCCTGCAGCCATTGCATC 2037
Query 2052 CGCACTTTCAACAACGGCTTCTCTATCAGACAGAAAGGGTGAGCATATAATGGCGCAACG 2111
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2038 CGCACTTTCAACAACAGCTTCTTTATCAGACAGAAAGGGTGAGCATATAATGGCACAACG 2097
Query 2112 CACTGTCTTAAACCCCGACATTAGTCAGTCCCCTGCAACACCGTTT-GATATGGGTAGCG 2170
|||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 2098 CACTGTCTTAAACCCCGACATTAGTCAGTCTCCTGCAACACC-TTTCGATATGGGTAGCG 2156
Query 2171 GATTTGTTAATGCAACTGCAGCTCTTGACCCTGGTTTGATTTTTGACATAGGTTACAATG 2230
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2157 GATTCGTCAATGCAACTGCAGCTCTTGACCCTGGTTTGATTTTCGACATAGGTTACAATG 2216
Query 2231 AATACATGAAGTTTCTCTGTGGTATCAACGGATCATCTCCAGTCGTTCTCAACTACACCG 2290
|||||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||
Sbjct 2217 AATACATGAAGTTTCTCTGTAGCATCAACGGATCATCTCCAGTTGTTCTCAACTTCACCG 2276
Query 2291 GTGAAAGCTGCTCGTCATACAACTCTTCCCTTGCAGCCTCTGACTTGAACCTACCCTCAG 2350
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2277 GTGAAAGCTGCTCGGCGTACAACTCCTCCCTTGCAGCCTCTGACTTGAACCTACCCTCAG 2336
Query 2351 TCACAATAGCTAAACTCGTTGGGACTCGAGCCGTCCTAAGATGGGTGACTAATATCGCAA 2410
|||||||||||||||| ||||| |||||| | || |||||||||||||||||||||||||
Sbjct 2337 TCACAATAGCTAAACTAGTTGGTACTCGAACTGTACTAAGATGGGTGACTAATATCGCAA 2396
Query 2411 CCACGGCTACAAACGAAACATATATAGTCGGGTGGATGGCACCGGACTCAGTCTCGGTTA 2470
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2397 CCACGGCTACAAACGAAACATATACAGTCGGGTGGATGGCACCTGACTCAGTCTCGGTTA 2456
Query 2471 AGGTCTCACCTGCCAAGTTTACAATAGGAAACGGGCAGACACGGGTCTTGAGCCTTGTCT 2530
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2457 AGGTCTCACCTGCCAAGTTTACAATCGGAAACGGGCAGACACGGGTCTTGAGTCTTGTCT 2516
Query 2531 TTCGAGCGATGAAGAATGTTTCGATGGCTAGTTTTGGGAGAATTGGACTGTTTGGAGATA 2590
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 2517 TTCGAGCGATGAAGAATGTTTCGATAGCGAGTTTTGGGAGAATTGGGCTGTTTGGAGATA 2576
Query 2591 GAGGTCACGTTGTTAACATTCCAGTGGCAGTCATCTACAAGATTGCTGTCTGAAAAAATA 2650
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2577 GAGGTCACATTGTTAACATTCCAGTGGCAGTCATCTACAAGATTGCTGTCTGAAAAA-TA 2635
Query 2651 GGTTTGTTACATGCAGAGGTTTTTGTGTGATGATGAAACAAACTTAAGGGAGTTGATCAA 2710
||||||||| | |||||| |||| ||||||||||||||||||||| || ||||| || ||
Sbjct 2636 GGTTTGTTATACGCAGAG-TTTTAGTGTGATGATGAAACAAACTTGAGAGAGTT-AT-AA 2692
Query 2711 ATTCtttttctttttttGGGGTTAGTTA-T-A-TGTTTTTGTGCATTGCTTAAAAAGCTT 2767
|||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 2693 ATTCTTTTCCTTTTTTTGGGGTTAGTTAATGAATGTTTTTGTGCATTGCTTAAAAAGCTT 2752
Query 2768 TAGAGAGATTTGTAGTTTGTAAATGCT-TTTGGAATGATGAAGTTGATTGAAT 2819
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2753 TAGAGAGATTTGTAGTTTGTAAATG-TGTTTGGAATGATGAAGTTGATTGAAT 2804
> Ahg952041 jgi|Araly1|952041|scaffold_32500002.1
Length=805
Score = 1074 bits (581), Expect = 0.0
Identities = 681/730 (93%), Gaps = 4/730 (1%)
Strand=Plus/Plus
Query 1674 ACTCCGGTATTACAATTCTTCTCTGTTGAGGGAAAATGGTTCAGGGAAGATTGTTGGGTC 1733
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct 29 ACTCCGGTATTACAATTCTTCTCTGTTGAGGGAGAATGGTTCAGGCAAAATAGTTGGGTC 88
Query 1734 TGCGTCTGTTGCTAAAATTGTTGGTGGCATGAGGCCTACCTATGGCATTACAGCTCCCAA 1793
||| || ||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 89 TGCATCAGTTGCTAGAATTGTTGGTGGCATGAAGCCTACCTATAGCATTACTGCTCCCAA 148
Query 1794 GGTCATGTATTTCTCTGCTAGGGGACCTGACCCAGAAGATGATTCTTTCGTTGATGCTGA 1853
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGTCATGTATTTCTCAGCTAGAGGACCTGACCCAGAAGATGATTCTTTCGTTGATGCTGA 208
Query 1854 TATAATGAAACCCAACTTAGTAGCTCCCGGAAACGCGATATGGGGAGCTTGGAGTCCTCT 1913
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 209 TATAATGAAACCCAACTTAGTAGCTCCCGGAAATGCGATATGGGGCGCTTGGAGTCCTCT 268
Query 1914 TGGCATTGGTACAAATGATTTTCAAGGTGAACGTTTTGCGATGGAATCGGGGACAAGCAT 1973
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 269 TGGCATTGGTACAACCGATTTTCAAGGTGAACGATTTGTAATGAAATCGGGGACAAGCAT 328
Query 1974 GTCTGCTCCACATGTAACCGGG-ATTGCGGCGCTCATCAAGCAGAAGTTCCCACATTTCA 2032
|||||||||||||||||| ||| ||| ||||||||||||| || ||||||| ||||||||
Sbjct 329 GTCTGCTCCACATGTAAC-GGGTATTTCGGCGCTCATCAAACAAAAGTTCCTACATTTCA 387
Query 2033 CTCCTGCAGCCATTGCATCCGCACTTTCAACAACGGCTTCTCTATCAGACAGAAAGGGTG 2092
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 388 CTCCTGCAGCCATTGCATCCACACTTTCAACAACAGCTTCTCTATCAGACAGAAAGGGTG 447
Query 2093 AGCATATAATGGCGCAACGCACTGTCTTAAACCCCGACATTAGTCAGTCCCCTGCAACAC 2152
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 448 AGCATATAATGGCACAACGCACTGTCTTAAACCCCGACATTAGTCAGTCCCCTGGAACAC 507
Query 2153 CGTTT-GATATGGGTAGCGGATTTGTTAATGCAACTGCAGCTCTTGACCCTGGTTTGATT 2211
| ||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 508 C-TTTCGATATAGGTAGCGGATTCGTCAATGCAACTGCAGCTCTTGACCCTGGTTTGATT 566
Query 2212 TTTGACATAGGTTACAATGAATACATGAAGTTTCTCTGTGGTATCAACGGATCATCTCCA 2271
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 567 TTCGACATAGGTTACAATGAATACATGAAGTTTCTCTGTAGCATCAACGGATCATCTCCA 626
Query 2272 GTCGTTCTCAACTACACCGGTGAAAGCTGCTCGTCATACAACTCTTCCCTTGCAGCCTCT 2331
|| |||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 627 GTTGTTCTCAACTTCACCGGTGAAAGCTGCTCGGCGTACAACTCCTCCCTTGCAGCCTCT 686
Query 2332 GACTTGAACCTACCCTCAGTCACAATAGCTAAACTCGTTGGGACTCGAGCCGTCCTAAGA 2391
||||||||| ||||||||||||||||||||||||| ||||| |||||| | || ||||||
Sbjct 687 GACTTGAACGTACCCTCAGTCACAATAGCTAAACTAGTTGGTACTCGAACTGTACTAAGA 746
Query 2392 TGGGTGACTA 2401
||||||||||
Sbjct 747 TGGGTGACTA 756
> Ahg354793 jgi|Araly1|354793|fgenesh1_pg.C_scaffold_7001966
Length=636
Score = 584 bits (316), Expect = 1e-165
Identities = 361/383 (94%), Gaps = 2/383 (1%)
Strand=Plus/Plus
Query 2020 TTCCCACATTTCACTCCTGCAGCCATTGCATCCGCACTTTCAACAACGGCTTCTCTATCA 2079
|||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 226 TTCCTACAATTCACTCCTGCAGCCATTGCATCCGCACTTTCAACAACAGCTTCTCTATCA 285
Query 2080 GACAGAAAGGGTGAGCATATAATGGCGCAACGCACTGTCTTAAACCCCGACATTAGTCAG 2139
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 286 GACAGAAAGGGTGAGCATATAATGGCACAACGCACTGTCTTAAACCCCGACATTAGTCAG 345
Query 2140 TCCCCTGCAACACCGTTT-GATATGGGTAGCGGATTTGTTAATGCAACTGCAGCTCTTGA 2198
||||||||||| || ||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 346 TCCCCTGCAACTCC-TTTCGATATGGGTAGCGGATTCGTCAATGCAACTGCAGCTCTTGA 404
Query 2199 CCCTGGTTTGATTTTTGACATAGGTTACAATGAATACATGAAGTTTCTCTGTGGTATCAA 2258
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 405 CCCTGGTTTGATTTTCGACATAGGTTACAATGAATACATGAAGTTTCTCTGTAGCATCAA 464
Query 2259 CGGATCATCTCCAGTCGTTCTCAACTACACCGGTGAAAGCTGCTCGTCATACAACTCTTC 2318
||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||| ||
Sbjct 465 CGGATCATCTCCAGTTGTTCTCAACTTCACCGGTGAAAGCTGCTCGGCGTACAACTCCTC 524
Query 2319 CCTTGCAGCCTCTGACTTGAACCTACCCTCAGTCACAATAGCTAAACTCGTTGGGACTCG 2378
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 525 CCTTGCAGCCTCTGACTTGAACCTACCCTCAGTCACAATAGCTAAACTAGTTGGTACTCG 584
Query 2379 AGCCGTCCTAAGATGGGTGACTA 2401
| | || ||||||||||||||||
Sbjct 585 AACTGTACTAAGATGGGTGACTA 607
Score = 361 bits (195), Expect = 2e-98
Identities = 215/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 1762 ATGAGGCCTACCTATGGCATTACAGCTCCCAAGGTCATGTATTTCTCTGCTAGGGGACCT 1821
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAAGCCTACCTATGGCATTACTGCTCCCAAGGTCATGTATTTCTCTGCTAGAGGACCT 60
Query 1822 GACCCAGAAGATGATTCTTTCGTTGATGCTGATATAATGAAACCCAACTTAGTAGCTCCC 1881
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GACCCAGAAGATGATTCTTTCGTTAATGCTGATATAATGAAACCCAACTTAGTAGCTCCC 120
Query 1882 GGAAACGCGATATGGGGAGCTTGGAGTCCTCTTGGCATTGGTACAAATGATTTTCAAGGT 1941
||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GGAAATGCGATATGGGGCGCTTGGAGTCCTCTTGGCATTGGTACAACCGATTTTCAAGGT 180
Query 1942 GAACGTTTTGCGATGGAATCGGGGACAAGCATGTCTGCTCCACAT 1986
||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAACGATTTGCAATGGAATCGGGGACAAGCATGTCTGCTCCACAT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107262129920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5