BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30620.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922129 jgi|Araly1|922129|scaffold_103410.1 2082 0.0
Ahg901326 jgi|Araly1|901326|Al_scaffold_0004_1976 1230 0.0
> Ahg922129 jgi|Araly1|922129|scaffold_103410.1
Length=1297
Score = 2082 bits (1127), Expect = 0.0
Identities = 1240/1294 (96%), Gaps = 9/1294 (1%)
Strand=Plus/Plus
Query 375 AGCTGAAGTGAATCAAAATGTTTAGTTTTGGCCGAGCAAGAAGCCAAGGGAGGCAAAACA 434
||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 4 AGCTGAAGTAAATCAAAATGTTTAATTTTGGTCGAGCAAGAAGCCAAGGGAGGCAAAACA 63
Query 435 GATCTATGTCTCTTGGAGGACTGGATTATGCAGACCCCAAGAAGAAAAACAATTACTTGG 494
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 64 GATCTATGTCTCTTGGAGGACTAGATTATGCAGACCCGAAGAAGAAAAACAATTACTTGG 123
Query 495 GAAAGATTCTTTTGACAGCTTCTCTTACAGCCTTGTGCATTTTCATGCTCAAGCAATCTC 554
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 GAAAGATTCTTTTGACAGCTTCTCTTACAGCCTTGTGCATTTTCATGCTAAAGCAATCTC 183
Query 555 CAACATTCAATACTCCTAGCGTGTTTTCTCGACATGAGCCAGGGGTTACACATGTTTTGG 614
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 184 CAACTTTCAATACTCCGAGCGTGTTTTCTCGACATGAGCCAGGGGTTACACATGTTTTAG 243
Query 615 TCACTGGTGGTGCTGGGTATATTGGTTCACATGCAGCTCTAAGGCTTCTAAAGGAATCAT 674
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 244 TCACTGGTGGTGCTGGTTATATTGGTTCACATGCAGCTCTAAGGCTTTTAAAGGAATCAT 303
Query 675 ATCGAGTAACCATTGTGGACAATCTATCACG-GGGCAATC-TCGCTGCAGTCAGGATTTT 732
| ||||| ||||| ||||||||||||||||| ||| |||| | || ||||||| ||||||
Sbjct 304 ACCGAGTTACCATCGTGGACAATCTATCACGTGGG-AATCTTGGC-GCAGTCAAGATTTT 361
Query 733 GCAAGAACTATTTCCGGAACCTGGAAGGCTTCAATTTATTTATGCTGATCTTGGAGATGC 792
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GCAAGAACTGTTTCCTGAACCTGGAAGGCTTCAATTTATTTATGCTGATCTTGGAGATG- 420
Query 793 CAAA-GCTGTCAACAAGATATTCACAGAGAATGCCTTTGACGCTGTGATGCATTTCGCTG 851
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 421 CAAAGGCTGTCAACAAGATATTCACAGAGAACGCCTTTGACGCTGTAATGCATTTCGCCG 480
Query 852 CTGTTGCATATGTTGGGGAAAGCACACAATTCCCTCTTAAGTATTATCACAATATTACAT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGTTGCATATGTTGGGGAAAGCACACAATTCCCTCTTAAGTATTATCACAATATTACAT 540
Query 912 CGAACACTTTGGTAGTATTAGAGACAATGGCTGCTCATGGAGTAAAGACTTTGATATATT 971
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 CGAACACTTTGGTCGTATTAGAGACAATGGCCGCTCATGGAGTAAAGACTTTGATATATT 600
Query 972 CAAGCACTTGTGCAACGTATGGGGAGCCTGATATTATGCCAATTACAGAGGAAACTCCTC 1031
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 601 CAAGCACTTGTGCAACGTATGGGGAGCCTGATACTATGCCAATTACAGAGGAAACTCCTC 660
Query 1032 AGGTGCCAATCAACCCATATGGTAAGGCCAAGAAGATGGCAGAAGATATCATTTTGGATT 1091
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGTGCCAATCAATCCATATGGTAAGGCCAAGAAGATGGCAGAAGATATCATTTTGGATT 720
Query 1092 TCTCGAAAAACTCAGATATGGCAGTTATGATCCTAAGATATTTCAATGTGATTGGGTCCG 1151
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTCGAAAAACTCAAATATGGCAGTTATGATCCTAAGATATTTCAATGTGATTGGGTCCG 780
Query 1152 ATCCAGAGGGCAGATTGGGTGAAGCCCCAAGACCTGAGCTGCGAGAGCATGGACGCATCT 1211
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 781 ATCCAGAGGGCAGATTGGGTGAAGCCCCAAGGCCTGAACTGCGTGAGCATGGACGCATCT 840
Query 1212 CCGGTGCTTGTTTTGATGCAGCACGTGGCATCATGCCTGGCCTACAGATCAAAGGAACAG 1271
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCGGTGCTTGCTTTGATGCAGCACGTGGCATCATGCCTGGCCTACAGATCAAAGGAACAG 900
Query 1272 ACTACAAAACCGCTGATGGAACTTGCGTACGGGATTACATTGATGTCACTGATTTGGTTG 1331
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 901 ACTACAAAACCGCTGATGGAACTTGCGTACGTGATTACATTGATGTCACTGACTTGGTTG 960
Query 1332 ATGCTCATGTTAAAGCTCTTCAAAAGGCAAAACCACGCAAAGTTGGAATCTACAATGTTG 1391
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 961 ATGCTCATGTTAAAGCTCTTCAGAAGGCAAAACCCCGTAAAGTTGGAATCTACAATGTTG 1020
Query 1392 GCACCGGGAAAGGTAGCTCGGTGAAAGAGTTTGTTGAGGCGTGCAAGAAAGCAACTGGTG 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCACCGGGAAAGGTAGCTCGGTGAAAGAGTTTGTTGAGGCGTGCAAGAAAGCAACTGGTG 1080
Query 1452 TTGAGATCAAGATCGACTATTTGCCTAGACGTGCAGGTGATTACGCTGAGGTTTACAGTG 1511
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1081 TTGAGATCAAGATCGAATACTTGCCTAGGCGTGCAGGTGATTACGCTGAGGTTTACAGTG 1140
Query 1512 ATCCAAGCAAGATTAGGAAGGAACTTAACTGGACAGCTAAGCACACTAATCTCAAAGAGA 1571
| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1141 ACCCGAGCAAGATCAGGAAGGAACTTAATTGGACAGCTAAGCACACTAATCTCAAAGAGA 1200
Query 1572 GTCTTGAGACTGCATGGAGATGGCAGAAGCTGCACCGTAATGGCTATGGCTTAACAACCT 1631
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| | |
Sbjct 1201 GTCTTGAGACTGCATGGAGATGGCAGAAGCTGCACCGTAATGGCTACGGGTTAAC--C-T 1257
Query 1632 CATCGGTCTCGGTTTACTGACTTTGTTCATTCCT 1665
||||||||| ||||||||||||||||||||||||
Sbjct 1258 CATCGGTCTGGGTTTACTGACTTTGTTCATTCCT 1291
> Ahg901326 jgi|Araly1|901326|Al_scaffold_0004_1976
Length=1254
Score = 1230 bits (666), Expect = 0.0
Identities = 1036/1214 (85%), Gaps = 27/1214 (2%)
Strand=Plus/Plus
Query 422 GGGAGGCAAAACAGATCTATGTCTCTTGGAGGACTGGA-TTATGCAGACCCCAAGAAGAA 480
|||||||||||||||||||||||| ||| |||| |||| ||| |||||||| ||||||||
Sbjct 28 GGGAGGCAAAACAGATCTATGTCTTTTGAAGGATTGGATTTA-GCAGACCCAAAGAAGAA 86
Query 481 AAACAATTACTTGGGAAAGATTCTTTT-GACAGCT-TCTCTTACAGCCTTGTGCATTTTC 538
||||||||| |||| |||||| |||| | || | | |||||||| |||| ||| ||
Sbjct 87 CAACAATTACATGGGGAAGATTGTTTTGGTCA--TGACACTTACAGCAATGTGTATTCTC 144
Query 539 ATGCTCAAGCAATCTCCAACATTCAATACTCCTAGCGTGTTTTCTCGACATGAGCCAGGG 598
||||||||||||| ||||| || ||||| || |||||||||||||||||||| |||||
Sbjct 145 TTGCTCAAGCAATCCCCAACCTTTAATACCCCGAGCGTGTTTTCTCGACATGAACCAGGA 204
Query 599 GTTACACATGTTTTGGTCACTGGTGGTGCTGGGTATATTGGTTCACATGCAGCTCTAAGG 658
||||||||||| | |||||||||||||| |||||||| || ||||| ||||| || |
Sbjct 205 ATTACACATGTTCTAGTCACTGGTGGTGCAGGGTATATCGGGTCACACACAGCTTTACGT 264
Query 659 CTTCTAAAGGAATCATATCGAGTAACCATTGTGGACAATCTATCACG-GGGCAATCTCGC 717
|||||||| || ||||| || || |||||||||||||||||||| || ||| || ||||
Sbjct 265 CTTCTAAAAGATTCATACCGTGTCACCATTGTGGACAATCTATCTCGAGGG-AACCTCGG 323
Query 718 TGCAGTCAGGATTTTGCAAGAACTATTTCCGGAACCTGGAAGGCTTCAATTTATTTATGC 777
|||| ||| |||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 324 TGCAATCAAGATTTTGCAACAACTGTTTCCGGAACCTGGAAGGCTTCAATTCATTTATGC 383
Query 778 TGATCTTGGAGATGCCAAAGCTGTCAACAAGATATTCACAGAGAATGCCTTTGACGCTGT 837
||||||||||||||| |||||||| ||||| ||||| | || || || |||||||||||
Sbjct 384 TGATCTTGGAGATGCAAAAGCTGTTAACAAAATATTTTCTGAAAACGCATTTGACGCTGT 443
Query 838 GATGCATTTCGCTGCTGTTGCATATGTTGGGGAAAGCACACAATTCCCTCTTAAGTATTA 897
|||||||||||| |||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 444 GATGCATTTCGCGGCTGTTGCTTATGTTGGAGAAAGCACACAATTTCCTCTCAAGTATTA 503
Query 898 TCACAATATTACATCGAACACTTTGGTAGTATTAGAGACAATGGCTGCTCATGGAGTAAA 957
||||||||||||||||||||| |||||||| |||||||||||||||||| |||| || ||
Sbjct 504 TCACAATATTACATCGAACACATTGGTAGTTTTAGAGACAATGGCTGCTTATGGTGTGAA 563
Query 958 GACTTTGATATATTCAAGCACTTGTGCAACGTATGGGGAGCCTGATATTATGCCAATTAC 1017
||||||||||||||||||||| ||||| || ||||| |||||||| | |||||||| ||
Sbjct 564 GACTTTGATATATTCAAGCACATGTGCTACTTATGGAGAGCCTGAGAAGATGCCAATAAC 623
Query 1018 AGAGGAAACTCCTCAGGTGCCAATCAACCCATATGGTAAGGCCAAGAAGATGGCAGAAGA 1077
|||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||
Sbjct 624 AGAGGAAACTCCTCAGGTTCCAATCAATCCATATGGAAAGGCTAAGAAGATGGCAGAAGA 683
Query 1078 TATCATTTTGGATTTCTCGAAAAACTC-AGATATGGCAGTTATGATCCTAAG---ATATT 1133
|||||| || |||||||| || || || | |||||||||||||||||| || |||||
Sbjct 684 TATCATCTTAGATTTCTCCAAGAATTCTA-ATATGGCAGTTATGATCCGGAGGTTATATT 742
Query 1134 TCAATGTGATTGGGTCCGATCCAGAGGGCAGATTGGGTGAAGCCCCAAGACCTGAGCTGC 1193
|||||||||||||||| ||||| ||||||||| | |||||||| ||||||||||| || |
Sbjct 743 TCAATGTGATTGGGTCTGATCCTGAGGGCAGACTAGGTGAAGCTCCAAGACCTGAACT-C 801
Query 1194 -GAGAGCATGGACGCATCTCCGGTGCTTGTTTTGATGCAGCACGTGGCATCATGCCTGGC 1252
||||||||||||| ||||| |||||||| ||||| || ||||| |||||||| || ||
Sbjct 802 AGAGAGCATGGACGAATCTCTGGTGCTTGCTTTGACGCTGCACGAGGCATCATTCCCGGG 861
Query 1253 CTACAGATCAAAGGAACAGACTACAAAACCGCTGATGGAACTTGCGTACGGGATTACATT 1312
|| ||||| ||||||||||||||||| || | |||||| ||||| ||||| |||||||||
Sbjct 862 CTGCAGATTAAAGGAACAGACTACAAGACTGTTGATGGGACTTGTGTACGTGATTACATT 921
Query 1313 GATGTCACTGATTTGGTTGATGCTCATGTTAAAGCTCTTCAAAAGGCAAAACCACGCAAA 1372
|||||||| || |||| |||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct 922 GATGTCACCGACTTGGATGATGCTCATGTTAAAGCTCTTGAAAAGGCGAAACCCCGCAAA 981
Query 1373 GTTGGAATCTACAATGTTGGCACCGGGAAAGGTAGCTCGGTGAAAGAGTTTGTTGAGGCG 1432
|||||||||| |||||||| ||||||||||||||| ||||||| |||||||| || ||
Sbjct 982 GTTGGAATCTTTAATGTTGGTACCGGGAAAGGTAGCACGGTGAAGGAGTTTGTGGAAGCA 1041
Query 1433 TGCAAGAAAG-CAACTGGTGTTGAGATCAA-GATCGACTATTT-GCCTAGACGTGCAGGT 1489
||||| |||| | ||||| ||||| || || | | || || || | ||||| |||||
Sbjct 1042 TGCAA-AAAGGCGACTGGAGTTGATATAAAAGTT-GATTACTTAGAA-AGACGGGCAGGA 1098
Query 1490 GATTACGCTGAGGTTTACAGTGATCCAAGCAAGATTAG-GAAGGAACTTAACTGGACAGC 1548
||||| || ||||||||||| || ||||| ||||| || |||| | || || ||||||||
Sbjct 1099 GATTATGCCGAGGTTTACAGCGACCCAAGTAAGATCAGAGAAG-AGCTGAATTGGACAGC 1157
Query 1549 TAAGCACACTAATCT-CAAAGAGAGTCTTGA-GACTGCATGGAGATGGCAGAAGCTGCAC 1606
||||||||| ||||| ||| || ||| || | ||| |||||||||||||| ||||| ||
Sbjct 1158 TAAGCACACAAATCTTCAA-GAAAGT-TTAAAGACAGCATGGAGATGGCAAAAGCTTCAT 1215
Query 1607 CGTAATGGCTATGG 1620
| |||||||||||
Sbjct 1216 CACAATGGCTATGG 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5