BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30640.1
Length=1922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313702 jgi|Araly1|313702|fgenesh1_pm.C_scaffold_1002482 2630 0.0
> Ahg313702 jgi|Araly1|313702|fgenesh1_pm.C_scaffold_1002482
Length=1695
Score = 2630 bits (1424), Expect = 0.0
Identities = 1587/1668 (95%), Gaps = 2/1668 (0%)
Strand=Plus/Plus
Query 240 ACGGAGCCTACAAGGAGCTGGTTCCAGATACGGCAGCAGAAACCGGATAAATCAAGCCCT 299
||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| || |||
Sbjct 7 ACGGAACCTACGAGGAGTTGGTTCCAGATACGGCAGCAGAAACCCGATAAATCCAGTCCT 66
Query 300 ACTAAAAAGGGACAAGAGGGAAATGTGAAGAATCTTGGGAGACCTCCTATGAATGATGCA 359
||||||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 67 ACTAAAAGGGGACAGGAGGGAAATGTGAAGAATATTGGCAGACCTCCTATGAATGATGCA 126
Query 360 CCATCTAATGCTACTAAACAGAAAGTTGCTGCAGCGAAGCAATATATCGAGAATCATTAT 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 127 CCATCTAATGCTACTAAACAGAAAGTTGCTGCGGCGAAGCAATATATCGAGAATCATTAT 186
Query 420 AAAATTCAGAAGAAGAGTCTCCAGGAAAGAAAAGAGCGTCGGAGCATCTTGGAACAAAAC 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 187 AAAACTCAGAAGAAGAGTCTCCAGGAAAGAAAAGAGCGTCGGAGCATCTTGGAGCAAAAC 246
Query 480 CTAGCTGATGCTGATGTTACTGTTGAAGACAAGATGGATATATTAAAGAACTTTGAGAAA 539
|||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 247 TTAGCCGATGCTGATGTTCCTGTTGAAGACAAGATGAATATATTAAAGAACTTTGAGAAA 306
Query 540 AAGGAAATGGAGTATATGCGTCTACAAAGACAGAAAATGGGGGTTGATGACTTTGAACTG 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 307 AAGGAAATGGAGTATATGCGTCTACAAAGACAGAAAATGGGGGTGGATGACTTTGAATTG 366
Query 600 CTTAGCATCATTGGCCGGGGTGCTTTCGGTGAGGTGAGAATTTGTAAAGAAAAATCTACT 659
|| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 367 CTGAGTATCATTGGCCGAGGTGCTTTCGGTGAGGTGAGAATTTGTAGAGAAAAATCTACT 426
Query 660 GGAAGCGTATATGCAATGAAAAAGTTAAAGAAATCCGAGATGCTTCGACGAGGGCAGGTG 719
|| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 427 GGCAGTGTGTATGCAATGAAAAAGCTAAAGAAATCCGAGATGCTTCGACGAGGGCAGGTG 486
Query 720 GAACATGTTAAAGCTGAAAGAAATGTGCTTGCAGAAGTGGATAGCCCTTTCATTGTCAAG 779
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 487 GAACATGTTAAGGCTGAAAGAAATGTGCTTGCAGAAGTGGATAGTCCTTTCATCGTCAAG 546
Query 780 CTTTGTTACTCTTTCCAAGATGATGAGCATTTGTATCTTATTATGGAATACCTCCCTGGA 839
||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 547 CTTTGCTACTCCTTCCAAGATGATGAGCATTTGTACCTTATTATGGAATATCTCCCTGGA 606
Query 840 GGTGATATGATGACACTGCTGATGCGAAAGGATACCTTACGGGAAGATGAGACTCGGTTT 899
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 607 GGTGATATGATGACACTGCTGATGCGAAAGGATACCTTACGAGAAGATGAGACTCGATTT 666
Query 900 TATGTTGCGCAGACAATTCTGGCTATTGAGTCTATCCATAAGCATAATTACGTCCACAGG 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TATGTTGCACAGACAATTCTGGCTATTGAGTCTATCCATAAGCATAATTACGTCCACAGG 726
Query 960 GATATAAAGCCTGATAATTTATTGATTACTCGAAACGGCCATATCAAGCTTTCAGATTTT 1019
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 727 GATATAAAGCCTGATAATCTATTGATTACTCGTAACGGCCATATCAAGCTTTCAGATTTT 786
Query 1020 GGATTGAGCAAGTCTCTGGAAAGCAAAAATTTTCCAGATTTTAAGGCGGAGCTTGTTGAC 1079
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 787 GGATTGAGCAAGTCTCTGGAGAGCAAAAATTTTCCAGATTTTAAGGCGGAGCTTGTTGAC 846
Query 1080 AGGAGTACAAAGCCTGCAGCAGAACATGATAGACTCTCCAAGCCTCCTTCTGCACCTAGG 1139
|||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 847 AGGAATGCAAAGCCTGCAGCAGAATATGACAGACTCTCCAAGCCTCCTTCTGCACCTAGG 906
Query 1140 AGAACTCAGCAGGAACAGCTTTTACATTGGCAACAAAACAGAAGGACCCTGGCTTTTTCT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CGAACTCAGCAGGAACAGCTTTTACATTGGCAACAAAACAGAAGGACCCTGGCTTTTTCT 966
Query 1200 ACAGTAGGAACTCCCGATTACATTGCCCCTGAGGTGCTGCTGAAGAAAGGGTATGGAATG 1259
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 ACCGTAGGCACTCCTGATTACATTGCCCCTGAGGTGCTGCTGAAGAAAGGGTATGGAATG 1026
Query 1260 GAGTGTGATTGGTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCA 1319
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1027 GAGTGTGATTGGTGGTCTCTTGGAGCAATCATGTTCGAGATGCTCGTAGGGTTTCCGCCA 1086
Query 1320 TTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGATTGTAAACTGGAAAACCTGCTTG 1379
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TTCTATTCCGAAGAGCCTTTGGCAACATGTAGAAAGATTGTAAACTGGAAAACCTGCTTG 1146
Query 1380 AAGTTCCCTGATGAAGCTAAGCTCTCCATCGAGGTAAAAGATCTTATCCGAAGACTGCTC 1439
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 1147 AAATTCCCTGATGAAGCTAAGCTCTCCATCGAGGTAAAAGATCTCATCCAAAGACTTCTC 1206
Query 1440 TGCAATGTCGAACAGAGGCTTGGGACCAAAGGAGTTCACGAAATCAAAGCACACCCTTGG 1499
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1207 TGCAATGTTGAACAGAGGCTTGGAACCAAAGGAGTTCATGAAATCAAAGCACACCCTTGG 1266
Query 1500 TTTAGGGGAGTCGAATGGGAACGGCTATATGAGTCAAATGCTCCATATATACCACAAGTG 1559
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TTTAGAGGAGTCGAATGGGAACGGCTATATGAGTCAAATGCTCCATATATACCACAAGTG 1326
Query 1560 AAGCATGAGCTTGATACCCAAAACTTTGAAAAGTTTGATGAGGTACCATCTACTTGCCAA 1619
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1327 AAGCATGAGCTTGATACCCAAAACTTTGAAAAGTTTGATGAGGCGCCATCTACTTGCCAA 1386
Query 1620 ACTTCTTCAAAGTCTAGCCCTTGGAGAAAGATGATCTCATCCAAAGATGCAAATTTCCTT 1679
||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||
Sbjct 1387 ACTTCTTCAAAGTCTGGCCCTTGGAGAAAGATGATCTCATCAAAAGATGTAAATTTTCTT 1446
Query 1680 GGTTATACATTCAAGAATCTGGAGATAGTTGATGAACACCATATCCCTGGCATGGCGGAA 1739
|||||||||||||||||| | ||||| |||||||||||| |||| |||||||||||||||
Sbjct 1447 GGTTATACATTCAAGAATATTGAGATCGTTGATGAACACAATATTCCTGGCATGGCGGAA 1506
Query 1740 CTGAAGCGGAAGAGTAAGACAGCAAATAAACCATCTCTCAAAACACTCTTCGAAACACCA 1799
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1507 TTGAAGCGGAAGAGTAAGACAGCAAAGAAACCATCTCTCAAGACACTGTTCGAAACACCG 1566
Query 1800 TATCCTCCTTCTGAGAATCAAGCCTTAAAGGATTTGCTTGATTCACCTATTTACTCTGAA 1859
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 TATCCTTCTCCTGAGAATCAAGCCTTAAAGGATTTGCTTGATTCACCTATTTACTCTGAG 1626
Query 1860 GGCTCTAGAGGGTCTTCCGGATCACCATTTTCACGA-CCGAATCAATC 1906
|| |||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1627 GGATCTAGAGGCTCTTCCGGATCACCATTTTCAC-ATCCGAATCAATC 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72219104520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5