BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30650.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922132 jgi|Araly1|922132|scaffold_103413.1 1921 0.0
Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1 137 2e-31
> Ahg922132 jgi|Araly1|922132|scaffold_103413.1
Length=1319
Score = 1921 bits (1040), Expect = 0.0
Identities = 1240/1335 (93%), Gaps = 20/1335 (1%)
Strand=Plus/Plus
Query 290 ATCATCGTCATATATAGATTATGTGCAGCGTCTCTGAGCTTCTTGACATGGAAAACTTCC 349
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCGTCGTCATTTATAGATTATGTGCAGCGTCTCTGAGCTTCTTGACATGGAAAACTTTC 60
Query 350 AAGGAGACTTAACCGACGTCGTACGAGGAATCGGAGGCCACGTGTTATCACCGGAGACTC 409
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AAGGAGACTTAACCGACGTTGTACGAGGAATCGGAGGCCACGTGTTATCACCGGAAACTC 120
Query 410 CTCCCT-CGAACATCTGGCCTCTTCCTCTGTCACATCCAACACCATCACCGTCAGATCTT 468
|| ||| ||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||
Sbjct 121 CT-CCTCCGAACATCTGGCCTCTTCCACTGCCGCATCCACCACCATCGCCGTCAGATCTT 179
Query 469 AACATAAACCCCTTCGGAGATCCCTTTGTGAGCATGGACGATCCACTCCTCCAAGAACTA 528
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 180 CACATAAACCCCTTTGGAGATCCCTTTGTGAGCATGAACGATCCTCTCCTCCAAGAACTC 239
Query 529 AACTCCATCACAAACTCCGGCTATTTCTCCACCGTAGGAGATaacaacaacaacattcac 588
|||||| ||||||||||| |||||||||| | || |||||| ||||||| ||
Sbjct 240 AACTCCGTCACAAACTCCAGCTATTTCTCGAACGCCGGAGAT------AACAACA---AC 290
Query 589 aacaacaaTGGTTTCTTGGTTCCAAAGGTATTTGAGGAGGATCATATAAAGAGTCAATGT 648
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 291 AACAATAATGGTTTCTTGGTTCCTAAGGTATTTGAGGAGGATCATATAAAGAGTCAATGT 350
Query 649 AGTATCTTCCCAAGAATCCGGATCTCGCATAGTAACATCATCCACGATTCTTCTCCGTGT 708
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 351 AGTATCTTCCCAAGAATCCGGATCTCGCATAGTAACATCATCCATGATTCTTCTCCGTGT 410
Query 709 AATTCTCCGGCCATGTCGGCTCACGTTGTCGCAGCCGCAGCAGCCGCCTCGCCGAGAGGC 768
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 AATTCTCCGGCCATGTCGGCTCACGTTGTCGCAGCCGCAGCTGCCGCCTCGCCGAGAGGG 470
Query 769 ATCATCAACGTAGACACAAACAGTCCTAGAAACTGTCTATTGGTTGATGGTACCACGTTC 828
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 471 ATCATCAACGTAGACACAAACAGTCCTAGAAACTGTCTATTGGTCGATGGTAACACGTTC 530
Query 829 TCCTCGCAGATTCAGATATCTTCCCCTCGGAATCTAGGCCTTAAAAGAAGGAAGAGTCAG 888
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TCGTCGCAGATTCAGATATCTTCCCCTCGGAATCTAGGCCTTAAAAGAAGGAAGAGTCAG 590
Query 889 GCAAAGAAGGTGGTGTGTATTCCGGCCCCGGCTGCAATGAACAGCCGATCAAGCGGAGAA 948
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 591 GCAAAGAAGGTGGTGTGTATACCGGCGCCGGCTGCAATGAACAGCCGATCAAGCGGAGAA 650
Query 949 GTGGTTCCATCGGATCTATGGGCTTGGCGTAAATACGGTCAAAAACCTATCAAAGGCTCT 1008
|||||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 651 GTGGTTCCGTCTGATCTATGGGCTTGGCGTAAGTACGGTCAGAAACCCATCAAAGGCTCT 710
Query 1009 CCTTTTCCAAGGGGTTATTATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAA 1068
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CCTTTTCCAAGGGGTTACTATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAA 770
Query 1069 GTCGAAAGAAGCCGAACCGATCCAAACATGTTGGTGATTACATATACCTCCGAACATAAC 1128
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 771 GTCGAAAGGAGCCGAACCGATCCTAACATGTTGGTGATTACATATACCTCCGAACATAAC 830
Query 1129 CATCCTTGGCCCATCCAACGCAACGCTCTCGCCGGCTCCACACGCTCCTCCACCTCCTCC 1188
|||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 831 CATCCTTGGCCCATTCAACGCAACGCTCTCGCTGGCTCCACACGCTCCTCCTCCTCCTCC 890
Query 1189 TCATCTAACCCTAATCCTTCCAAACCCTCAACCGCAAACGTAAACTCCTCATCCATTGGC 1248
|| | ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 891 TC-T--AACCCTAATCCTTCCAAACCCTCAACCGCAAACATAACCTCATCATCCATTGGC 947
Query 1249 TCCCAAAACACCATCTACTTGCCTTCCTCCACCACTCCTCCTCCTACCCTCTCATCCTCC 1308
|||||||||||||| || ||| |||||||||||| |||||||||| | ||||||||||||
Sbjct 948 TCCCAAAACACCATATATTTGTCTTCCTCCACCATTCCTCCTCCTTCTCTCTCATCCTCC 1007
Query 1309 GCCATCAAAGATGAACGAGGGGACGATATGGAGTTGGAAAACGTAGATGATGATGATGAT 1368
||| | ||||||||||||| |||||| ||| |||| |||||| |||| || ||||| |||
Sbjct 1008 GCCGTTAAAGATGAACGAGAGGACGACATGCAGTTAGAAAACATAGAAGACGATGAGGAT 1067
Query 1369 AACCAGATTGCTCCATACAGACCGGAGCTTCATGATCATCAGCACCAACCAGATGATTTC 1428
|| ||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1068 AATCAGATTGCTCCGTATATACCGGAGCTTCATGATCATCAGCACCAGCCAGATGATTTC 1127
Query 1429 TTTGCAGATCTTGAAGAGCTAGAAGGAGATTCTCTAAGCATGTTGCTTTCTCATGGCTGT 1488
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1128 TTCGCAGATCTTGAAGAGCTAGAAGGAGATTCTCTAAGCATGTTGCTTTCTCAAGGCTGC 1187
Query 1489 GGCGGCGACGGGAAGGATAAAACGACCGCGTCCGATGGGATCAGCAATTTCTTCGGGTGG 1548
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1188 ACCGGCGACGGTAAAGATAAAACGACCGCGTCCGATGGGATCAGCAATTTCTTCGGCTGG 1247
Query 1549 TCGGGAGATAATAATTATAATAATTACGACGACCAAGACTCAAGGTCGTTATAG-TATA- 1606
||||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 1248 TCGGGAGATAATAATGATAAT--T-ACGACGACCAAGACTCAAGGTCGTTATAGATATAT 1304
Query 1607 -GTGTTAATTACAGG 1620
||||||||||||||
Sbjct 1305 AGTGTTAATTACAGG 1319
> Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1
Length=1346
Score = 137 bits (74), Expect = 2e-31
Identities = 100/113 (88%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 967 TGGGCTTGGCGTAAATACGGTCAAAAACCTATCAAAGGCTCTCCTTTTCCAAGGGGTTAT 1026
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||
Sbjct 696 TGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGAATTAT 755
Query 1027 TATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAAGTCGAAAGAAG 1079
|| ||||| || ||||||||||| |||| ||| |||| ||||| ||||||||
Sbjct 756 TACAGATGTAGTAGCTCAAAAGGATGTTTAGCTCGAAAACAAGTTGAAAGAAG 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5