BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G30650.1 Length=1926 Score E Sequences producing significant alignments: (Bits) Value Ahg922132 jgi|Araly1|922132|scaffold_103413.1 1921 0.0 Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1 137 2e-31 > Ahg922132 jgi|Araly1|922132|scaffold_103413.1 Length=1319 Score = 1921 bits (1040), Expect = 0.0 Identities = 1240/1335 (93%), Gaps = 20/1335 (1%) Strand=Plus/Plus Query 290 ATCATCGTCATATATAGATTATGTGCAGCGTCTCTGAGCTTCTTGACATGGAAAACTTCC 349 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATCGTCGTCATTTATAGATTATGTGCAGCGTCTCTGAGCTTCTTGACATGGAAAACTTTC 60 Query 350 AAGGAGACTTAACCGACGTCGTACGAGGAATCGGAGGCCACGTGTTATCACCGGAGACTC 409 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 61 AAGGAGACTTAACCGACGTTGTACGAGGAATCGGAGGCCACGTGTTATCACCGGAAACTC 120 Query 410 CTCCCT-CGAACATCTGGCCTCTTCCTCTGTCACATCCAACACCATCACCGTCAGATCTT 468 || ||| ||||||||||||||||||| ||| | |||||| ||||||| |||||||||||| Sbjct 121 CT-CCTCCGAACATCTGGCCTCTTCCACTGCCGCATCCACCACCATCGCCGTCAGATCTT 179 Query 469 AACATAAACCCCTTCGGAGATCCCTTTGTGAGCATGGACGATCCACTCCTCCAAGAACTA 528 ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 180 CACATAAACCCCTTTGGAGATCCCTTTGTGAGCATGAACGATCCTCTCCTCCAAGAACTC 239 Query 529 AACTCCATCACAAACTCCGGCTATTTCTCCACCGTAGGAGATaacaacaacaacattcac 588 |||||| ||||||||||| |||||||||| | || |||||| ||||||| || Sbjct 240 AACTCCGTCACAAACTCCAGCTATTTCTCGAACGCCGGAGAT------AACAACA---AC 290 Query 589 aacaacaaTGGTTTCTTGGTTCCAAAGGTATTTGAGGAGGATCATATAAAGAGTCAATGT 648 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 291 AACAATAATGGTTTCTTGGTTCCTAAGGTATTTGAGGAGGATCATATAAAGAGTCAATGT 350 Query 649 AGTATCTTCCCAAGAATCCGGATCTCGCATAGTAACATCATCCACGATTCTTCTCCGTGT 708 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 351 AGTATCTTCCCAAGAATCCGGATCTCGCATAGTAACATCATCCATGATTCTTCTCCGTGT 410 Query 709 AATTCTCCGGCCATGTCGGCTCACGTTGTCGCAGCCGCAGCAGCCGCCTCGCCGAGAGGC 768 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 411 AATTCTCCGGCCATGTCGGCTCACGTTGTCGCAGCCGCAGCTGCCGCCTCGCCGAGAGGG 470 Query 769 ATCATCAACGTAGACACAAACAGTCCTAGAAACTGTCTATTGGTTGATGGTACCACGTTC 828 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 471 ATCATCAACGTAGACACAAACAGTCCTAGAAACTGTCTATTGGTCGATGGTAACACGTTC 530 Query 829 TCCTCGCAGATTCAGATATCTTCCCCTCGGAATCTAGGCCTTAAAAGAAGGAAGAGTCAG 888 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 TCGTCGCAGATTCAGATATCTTCCCCTCGGAATCTAGGCCTTAAAAGAAGGAAGAGTCAG 590 Query 889 GCAAAGAAGGTGGTGTGTATTCCGGCCCCGGCTGCAATGAACAGCCGATCAAGCGGAGAA 948 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 591 GCAAAGAAGGTGGTGTGTATACCGGCGCCGGCTGCAATGAACAGCCGATCAAGCGGAGAA 650 Query 949 GTGGTTCCATCGGATCTATGGGCTTGGCGTAAATACGGTCAAAAACCTATCAAAGGCTCT 1008 |||||||| || |||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 651 GTGGTTCCGTCTGATCTATGGGCTTGGCGTAAGTACGGTCAGAAACCCATCAAAGGCTCT 710 Query 1009 CCTTTTCCAAGGGGTTATTATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAA 1068 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 711 CCTTTTCCAAGGGGTTACTATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAA 770 Query 1069 GTCGAAAGAAGCCGAACCGATCCAAACATGTTGGTGATTACATATACCTCCGAACATAAC 1128 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 771 GTCGAAAGGAGCCGAACCGATCCTAACATGTTGGTGATTACATATACCTCCGAACATAAC 830 Query 1129 CATCCTTGGCCCATCCAACGCAACGCTCTCGCCGGCTCCACACGCTCCTCCACCTCCTCC 1188 |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 831 CATCCTTGGCCCATTCAACGCAACGCTCTCGCTGGCTCCACACGCTCCTCCTCCTCCTCC 890 Query 1189 TCATCTAACCCTAATCCTTCCAAACCCTCAACCGCAAACGTAAACTCCTCATCCATTGGC 1248 || | ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| Sbjct 891 TC-T--AACCCTAATCCTTCCAAACCCTCAACCGCAAACATAACCTCATCATCCATTGGC 947 Query 1249 TCCCAAAACACCATCTACTTGCCTTCCTCCACCACTCCTCCTCCTACCCTCTCATCCTCC 1308 |||||||||||||| || ||| |||||||||||| |||||||||| | |||||||||||| Sbjct 948 TCCCAAAACACCATATATTTGTCTTCCTCCACCATTCCTCCTCCTTCTCTCTCATCCTCC 1007 Query 1309 GCCATCAAAGATGAACGAGGGGACGATATGGAGTTGGAAAACGTAGATGATGATGATGAT 1368 ||| | ||||||||||||| |||||| ||| |||| |||||| |||| || ||||| ||| Sbjct 1008 GCCGTTAAAGATGAACGAGAGGACGACATGCAGTTAGAAAACATAGAAGACGATGAGGAT 1067 Query 1369 AACCAGATTGCTCCATACAGACCGGAGCTTCATGATCATCAGCACCAACCAGATGATTTC 1428 || ||||||||||| || | ||||||||||||||||||||||||||| |||||||||||| Sbjct 1068 AATCAGATTGCTCCGTATATACCGGAGCTTCATGATCATCAGCACCAGCCAGATGATTTC 1127 Query 1429 TTTGCAGATCTTGAAGAGCTAGAAGGAGATTCTCTAAGCATGTTGCTTTCTCATGGCTGT 1488 || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1128 TTCGCAGATCTTGAAGAGCTAGAAGGAGATTCTCTAAGCATGTTGCTTTCTCAAGGCTGC 1187 Query 1489 GGCGGCGACGGGAAGGATAAAACGACCGCGTCCGATGGGATCAGCAATTTCTTCGGGTGG 1548 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1188 ACCGGCGACGGTAAAGATAAAACGACCGCGTCCGATGGGATCAGCAATTTCTTCGGCTGG 1247 Query 1549 TCGGGAGATAATAATTATAATAATTACGACGACCAAGACTCAAGGTCGTTATAG-TATA- 1606 ||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||| Sbjct 1248 TCGGGAGATAATAATGATAAT--T-ACGACGACCAAGACTCAAGGTCGTTATAGATATAT 1304 Query 1607 -GTGTTAATTACAGG 1620 |||||||||||||| Sbjct 1305 AGTGTTAATTACAGG 1319 > Ahg495347 jgi|Araly1|495347|fgenesh2_kg.8__1163__AT5G52830.1 Length=1346 Score = 137 bits (74), Expect = 2e-31 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 967 TGGGCTTGGCGTAAATACGGTCAAAAACCTATCAAAGGCTCTCCTTTTCCAAGGGGTTAT 1026 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| Sbjct 696 TGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGAATTAT 755 Query 1027 TATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAAGTCGAAAGAAG 1079 || ||||| || ||||||||||| |||| ||| |||| ||||| |||||||| Sbjct 756 TACAGATGTAGTAGCTCAAAAGGATGTTTAGCTCGAAAACAAGTTGAAAGAAG 808 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72371465500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5