BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30660.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912893 jgi|Araly1|912893|Al_scaffold_0001_3147 992 0.0
Ahg336171 jgi|Araly1|336171|fgenesh1_pg.C_scaffold_1002736 383 1e-105
> Ahg912893 jgi|Araly1|912893|Al_scaffold_0001_3147
Length=945
Score = 992 bits (537), Expect = 0.0
Identities = 640/690 (93%), Gaps = 6/690 (1%)
Strand=Plus/Plus
Query 59 TTGTTCCTGAAGAAGAAGCAGGCAAGAAG-GTTGTTCTGTCTAAATTAGTGACTTTGATG 117
||| || |||||| |||||||||||| || | |||||| |||||||||||||| ||| ||
Sbjct 38 TTGGTCATGAAGATGAAGCAGGCAAG-AGAGCTGTTCTATCTAAATTAGTGACATTGTTG 96
Query 118 CGTAAATTGTCAGAACAAGGAATCGATGCTCAAAACTGTCCTCCAGGAGTACGTAGTTGC 177
|| |||||| | |||||||||||||||||||||| |||||| |||||| ||||||| ||
Sbjct 97 CGAAAATTGGCGGAACAAGGAATCGATGCTCAAAGCTGTCCCCCAGGACAACGTAGTGGC 156
Query 178 TTGATATGTCCGAA-GTGTGAAGTTGGAGACTCTGGAGAAAAAAGCTTGACTCTTTACAT 236
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 157 TTGATATGTCC-AACGTGTGAAGGTGGAGACTCTGGAGAAAAAAACTTGACTCTTTACAT 215
Query 237 ATACCCTGATGGTTCGTCAGCTAAATGGACTTGCAGGAGGAAGTGTGGGTTAAAAGGTGT 296
|||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 216 ATACCCTGATGGTTCGTCAGCTAAGTGGAGTTGCAGGAGGAAGTGTGGTTTAAAAGGTGT 275
Query 297 ACTACAGGTGGATGGTAAGTTGGTATCTAAAGATCCAATAGGGAAGGTTGAAAGAAAAAT 356
| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 276 AGTACAGGTGGATGGTAAGTTGGTATATAAAGATCCAATAGAGAAGGTTGAAAGAAAAAT 335
Query 357 TACGGTGGAGAGTATAAAGCTAGAACCTCTCTGTGATGAGATTCAAGAtttttttGCTGC 416
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 336 TACGGTGGAGGGTATAAAGCTAGAACCACTCTGTGATGAGATTCAAGATTTTTTCGCTGC 395
Query 417 AAGAGCGATTTCAGGGAAAACACTCGAGAGAAATCGAGTTATGCAGAAAAGAATAGATGA 476
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 396 AAGAGCGATTTCAGTGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGA 455
Query 477 CGAGATTGTGATTGCTTTTACGTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCG 536
||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 456 CGAGATTATGATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCG 515
Query 537 ATCTCTAACTAAGAAGTTCGTTCAGGAAAGGAATACACGGAAGATCTTGTATGGGCTTGA 596
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct 516 GTCTCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAAGATCTTATATGGTCTTGA 575
Query 597 TGACATAGAAGAAA-CATCTGAAATCATTATAGTTGAAGGGGAACCAGATAAACTTGCAA 655
|||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 576 TGACATAGAA-AAAGCATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAA 634
Query 656 TGGAAGAGGCTGGTTTTTTCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGAGACGGTTT 715
||||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 635 TGGAAGAGGCTGGTTTTCTCAGTTGTGTGTCTGTTGCTGATGGAGCTCCAGTGACGGTTT 694
Query 716 CTTCAAAGGAAATTCCATCTGAATCCAAGG 745
| ||||||||||| ||||||||||||||||
Sbjct 695 CATCAAAGGAAATCCCATCTGAATCCAAGG 724
Score = 372 bits (201), Expect = 3e-102
Identities = 217/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 790 AAGGCGTCTCGGATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTCTAGCGGAA 849
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 AAGGTGTCTCGGATTGTTCTTGCTACTGACGGAGATGGACCTGGTCAAGCTCTGGCGGAA 780
Query 850 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGTTGGCTTGTCAAATGGCCGAAGAAAAGT 909
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGCTGGCTTGTCAAATGGCCGAAGAAAAGT 840
Query 910 GAAGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 969
|| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GAGGATGAATATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCAATTACTC 900
Query 970 AAGGAAGCTATTCTAAATGCTGAGCCTTACCCTTTGAAGTCATGA 1014
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 AAGGAAGCTATTCTAAATGCTGAGCCATACCCTTTGAAGTCATGA 945
> Ahg336171 jgi|Araly1|336171|fgenesh1_pg.C_scaffold_1002736
Length=2325
Score = 383 bits (207), Expect = 1e-105
Identities = 241/258 (93%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 480 GATTGTGATTGCTTTTACGTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGATC 539
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 948 GATTGTTATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 1007
Query 540 TCTAACTAAGAAGTTCGTTCAGGAAAGGAATACACGGAAGATCTTGTATGGGCTTGATGA 599
|||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 1008 TCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAGGATCTTATATGGTCTTGATGA 1067
Query 600 CATAGAAGAAACATCTGAAATCATTATAGTTGAAGGGGAACCAGATAAACTTGCAATGGA 659
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1068 CATAGAAAAAACATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAATGGA 1127
Query 660 AGAGGCTGGTTTTTTCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGAGACGGTTTCTTC 719
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1128 AGAGGCTGGTTTTCGCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGCGTCGGTTTCTTC 1187
Query 720 AAAGGAAATTCCATCTGA 737
|||||||| ||||||||
Sbjct 1188 AAAGGAAACCCCATCTGA 1205
Score = 355 bits (192), Expect = 3e-97
Identities = 261/294 (89%), Gaps = 5/294 (2%)
Strand=Plus/Plus
Query 191 AGTGTGAAGTTGGAGACTCTGGAGAAAAAAGCTTGACTCTTTACATATACCCTGATGGTT 250
||||||||| |||| |||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 593 AGTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTCATAGCCCCTGATGGTT 652
Query 251 CGTCAGCTAAATGGACTTGC---AGGAGGAAGTGTGGGTTAAAAGGTGTACTACAGGTGG 307
| ||||||| ||||| |||| ||| ||||||||||||||||||||| | ||| || ||
Sbjct 653 CATCAGCTACATGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTACGGGCGG 712
Query 308 ATGGTAAGTTGGTATCTAAAGATCCAATAGGGAAGGTTGAAAGAAAAATTACGGTGGAGA 367
|||||| ||||| |||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 713 ATGGTAGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACGGTGGAG- 771
Query 368 G-TATAAAGCTAGAACCTCTCTGTGATGAGATTCAAGAtttttttGCTGCAAGAGCGATT 426
| |||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 772 GCTATAGAGCTAGAACCGCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGAGCGATT 831
Query 427 TCAGGGAAAACACTCGAGAGAAATCGAGTTATGCAGAAAAGAATAGATGACGAG 480
||| |||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 832 TCACGGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGAG 885
Score = 331 bits (179), Expect = 5e-90
Identities = 202/213 (95%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 790 AAGGCGTCTCGGATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTCTAGCGGAA 849
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1210 AAGGCGTCTCGAATTGTTATTGCTACTGATGGAGATGGACCTGGTCAAGCTCTGGCGGAA 1269
Query 850 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGTTGGCTTGTCAAATGGCCGAAGAAAAGT 909
||| |||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||
Sbjct 1270 GAAATTGCACGGCGTTTGGGCAAAGAAAGATGTTGGCGTGTCAAGTGGCCGGAGAAAAGT 1329
Query 910 GAAGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 969
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GAGGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 1389
Query 970 AAGGAAGCTATTCTAAATGCTGAGCCTTA-CCC 1001
|||||||||||||||||||||||||| || |||
Sbjct 1390 AAGGAAGCTATTCTAAATGCTGAGCCATATCCC 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5