BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30670.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313705 jgi|Araly1|313705|fgenesh1_pm.C_scaffold_1002485 1103 0.0
> Ahg313705 jgi|Araly1|313705|fgenesh1_pm.C_scaffold_1002485
Length=795
Score = 1103 bits (597), Expect = 0.0
Identities = 739/805 (92%), Gaps = 20/805 (2%)
Strand=Plus/Plus
Query 1 ATGATTATCCCTG-AAACTGACA-GTTTCTTCTTCCAAG-AGCAACCGCAACATCAGCCA 57
||||||||||||| |||| |||| | ||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGATTATCCCTGAAAAC-GACACG-TTCTTCTTCCAAGCA-CAACCGCAACATCAGCCA 57
Query 58 TTGTATCCCGACGAAGCTCTTTCACCGTCTCTCTTCGGGTTTGATCACTATGATCATTTC 117
||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 58 TTGTATCACGACGAAGCTCTTTCACCGTCTCTCTTCAGGTTTGATCACTTTGATCATTTC 117
Query 118 TACGAGTCGTTTCTTCCATCTCAAGAAATCTTCCTTCCTAGCCCTAAGACCCGAGTCTTC 177
||||| |||||||||||| ||||||||||||| || |||| ||||||||||| |||||||
Sbjct 118 TACGATTCGTTTCTTCCACCTCAAGAAATCTTTCTCCCTATCCCTAAGACCCAAGTCTTC 177
Query 178 AACGAGTCACAGGAATTAGATT-C--CTTCCACACGCCAAAACACCAGAAA-CTCATTGA 233
|| ||||||||||| ||||||| | |||||||||||| |||||||| ||| ||||| |
Sbjct 178 AATGAGTCACAGGACTTAGATTCCTTCTTCCACACGCCTAAACACCA-AAACCTCATAAA 236
Query 234 CTCCAGCTTCCATTTCAACAGTCACGACCCTTTTTCCCCTAGCCCTGAATCTAATTACCT 293
|||||||||||||||||||| |||||||||||||||||| || ||| || || | ||||
Sbjct 237 CTCCAGCTTCCATTTCAACACTCACGACCCTTTTTCCCCGAGACCT-AA-CT-CTAACCT 293
Query 294 CTTG-GATTCTTACATCACAGAAGCTTCCAACATTTCCAAGTTTCAAGCTCCTGATTTCT 352
| || |||||||||||||| |||||| | ||||||||| |||||| || |||||||||||
Sbjct 294 C-TGTGATTCTTACATCACCGAAGCTGCTAACATTTCCGAGTTTCGAGTTCCTGATTTCT 352
Query 353 CATCGACGTTCAAGGTTGGGTGGACTGAACAAGGCGACACCAAGAAGCGAGAGCTATCTG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CATCGACGTTCAAGGTTGGGTGGACTGAACAAGGCGACACCAAGAAGCGAGAGCTATCTG 412
Query 413 CTCAGAGCATCGCAGCACGAAAGAGGAGAAGAAGAATCACAGAGAAGACTCAAGAGCTGG 472
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 413 CTCAGAGCATCGCAGCACGAAAAAGGAGAAGAAGAATCACAGAGAAGACTCAAGAGCTTG 472
Query 473 -GAAAACTAATCCCTGGAAGCCAGAAACACAACACTGCCGAAATGTTCAATGCCGCAGCT 531
|||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 473 CGAAA-CTAATTCCTGGAAGTCAGAAACACAACACTGCCGAAATGTTCCATGCCGCAGCT 531
Query 532 AAATATGTCAAGTTCTTGCAGGCTCAAATTGAGATTCTCCAACTGAAGCAGACCAAAATG 591
||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 532 AAATACGTCAAGTTCTTGCAGGCTCAAACTGAGATTCTCCAGCTGAAGCAGAGCAAAATA 591
Query 592 CAGACTCTGGATAGTTCAAAGGTGGGAAGAGAAATGCAGTTTTTGCTTGGTTCTCAAGAA 651
||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 592 CAGACTCGGGATAGTTCAAAGGTGGGAAGAGAAATACAGTTTTTGCTTGCCTCTCAAGAA 651
Query 652 ATCCAGGAGAAGCTATCTACAGAAGAAGTGTGTGTGGTTCCAAGGGAAATGGTTCAAGTC 711
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ATCCAGGAGAAGCTATCGACAGAAGAAGTGTGTGTGGTTCCAAGGGAAATGGTTCAAGTC 711
Query 712 CTAAAAGCCGAAGAATGCATCTTGACAAACCCTAAGATTTCTCGAGACATTAACAAATTG 771
|| |||||||||||||||||||||| |||||||||| ||||||||||||| || || |||
Sbjct 712 CTGAAAGCCGAAGAATGCATCTTGAGAAACCCTAAGCTTTCTCGAGACATCAATAAGTTG 771
Query 772 TTGTCAACAAATCTGA-TGAATTAG 795
|||||||||||||||| | ||||||
Sbjct 772 TTGTCAACAAATCTGACT-AATTAG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5