BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30680.1
Length=2563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336171 jgi|Araly1|336171|fgenesh1_pg.C_scaffold_1002736 1768 0.0
Ahg912893 jgi|Araly1|912893|Al_scaffold_0001_3147 859 0.0
> Ahg336171 jgi|Araly1|336171|fgenesh1_pg.C_scaffold_1002736
Length=2325
Score = 1768 bits (957), Expect = 0.0
Identities = 1064/1117 (95%), Gaps = 2/1117 (0%)
Strand=Plus/Plus
Query 1083 AAGGCGTCTCGAATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTATGGCGGAA 1142
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1210 AAGGCGTCTCGAATTGTTATTGCTACTGATGGAGATGGACCTGGTCAAGCTCTGGCGGAA 1269
Query 1143 GAAATTGCACGGCGTTTGGGTAAAGAAAGATGTTGGCGTGTCAAGTGGCCGAAGAAAAGT 1202
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1270 GAAATTGCACGGCGTTTGGGCAAAGAAAGATGTTGGCGTGTCAAGTGGCCGGAGAAAAGT 1329
Query 1203 GAGGATGAACATTTTAAAGATGCAAACGAGGTTCTTATGTCTAAGGGACCTCATTTACTC 1262
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1330 GAGGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 1389
Query 1263 AAGGAAGCTATTTTAGATGCTGAGCCATATCCTATACTAGGATTATTCTCCTTCAAAGAT 1322
|||||||||||| || |||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 1390 AAGGAAGCTATTCTAAATGCTGAGCCATATCCCATACGAGGATTATTCCCCTTCAAAGAT 1449
Query 1323 TTCTTTGATGAAATTGATGCCTACTATGATAGAACACATGGGCACGAGTATGGTGTTTCA 1382
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1450 TTCTTTGATGAAATTGATGCCTACTATCATAGAACACATGGGCACGAGTATGGTGTTTCA 1509
Query 1383 ACAGGGTGGAAAAATTTGGACAACTTGTATAGTGTTGTGCCAGGGGAGTTGACAGTTGTG 1442
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1510 ACAGGGTGGAAAAATTTGGACAACTTCTATAGTGTTGTGCCAGGGGAGTTGACAGTTGTG 1569
Query 1443 ACAGGGATCCCTAATTCTGGAAAGAGTGAATGGATTGATGCTATGTTGTGCAATCTTAAC 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 ACAGGGATCCCTAATTCTGGAAAGAGTGAATGGATTGATGCTATGTTGTGCAATCTTAAC 1629
Query 1503 CATAGTGTTGGCTGGAAATTTGCACTCTGTTCAATGGAGAATAAGGTACGAGATCATGCC 1562
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1630 CATAGTGTTGGCTGGAAATTTGCTCTCTGTTCAATGGAGAATAAGGTACGAGATCATGGC 1689
Query 1563 AGGAAACTTTTGGAAAAACATATAAAGAAACCATTCTTTGATGCAGACTATGGGAGATCT 1622
|||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1690 AGGAAACTCTTGGAAAAACATGTAAAGAAACCATTCTTTGATGCAGATTATGGGAGATCT 1749
Query 1623 GTCCAACGGATGAGCGTTGAGGAGAAGGATGAAGGGAAAAAGTGGTTGAATGACACCTTC 1682
||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 1750 GTCCAACGGATGAACGTTGAGGAGTTGGATGAAGGGAAACAGTGGTTGAACGACACCTTC 1809
Query 1683 TATCCCATAAGATGTGAGATGGATTCACTTCCAAGTATTGATTGGGTTCTGGAACGTGCA 1742
| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1810 TCTCTCATAAGATGTGAGATGGATTCACTTCCAAGTATTGAATGGGTTCTGGAACGTGCG 1869
Query 1743 AAAGCAGCTGTTCTTCGGTATGGGATTCGAGGACTTGTTATAGATCCTTACAATGAGCTC 1802
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1870 AAAGCAGCTGTTCTTCGGTACGGGATTCGAGGACTTGTTATAGATCCTTACAATGAGCTC 1929
Query 1803 GATCATCAACGTACTCCACGCCAGACGGAGACAGAGTATGTCAGCCAGATGCTTACAAAA 1862
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1930 GATCATCAACGTACTTCACGCCAGACGGAGACAGAGTATGTTAGCCAGATGCTTACAAAG 1989
Query 1863 ATCAAACGCTTTTCCCAACACCACTCCTGCCATGTCTGGTTTGTCGCTCATCCAAAACAG 1922
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1990 ATCAAACGCTTTTCCCAACACCACTCCTGCCATGTCTGGTTTGTTGCTCATCCAAAACAG 2049
Query 1923 TTGCAACATTGGGATGGCGGTGCACCAAACCTTTACGATATTAGTGGCAGCGCACATTTT 1982
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 TTGCAACATTGGGACGGTGGTGCACCAAACCTTTACGATATTAGTGGCAGCGCACATTTT 2109
Query 1983 ATAAACAAATGTGACAATGGTATTATAGTTCACAGAAACCGCGACGAAAATGCTGGACCT 2042
||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 2110 ATAAACAAATGTGACAATGGTATAATAGTTCACAGAAACCGTGATGAAAAAGCTGGACCT 2169
Query 2043 CTTGATCTAGTTCAAATTGGTGTGAGGAAAGTACGAAACAAGGTGGCAGGACAAATTGGT 2102
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2170 CTTGATCTTGTGCAAATTGGTGTGAGGAAAGTACGAAACAAGGTTGCAGGACAAATTGGT 2229
Query 2103 GATGCATACTTGTGTTATGACAGGACAACTGGTTCCTACTCGGATTCTCCAGTGACGCCT 2162
|||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2230 GATGCATATTTGTGTTATGACAGGGCAACTGGTTTGTACTCGGATTCTCCAGTGACGCCT 2289
Query 2163 G-GAATGCCAGAGAGGAGATCACCCAAGCGGTACTGA 2198
| || | || ||||||||| || ||| |||||||||
Sbjct 2290 GAGA-TACCTGAGAGGAGACCAAGCAACCGGTACTGA 2325
Score = 512 bits (277), Expect = 5e-144
Identities = 287/292 (98%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 482 GTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTTATAGCCCCTGATGGTTC 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 GTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTCATAGCCCCTGATGGTTC 653
Query 542 ATCAGCTACATGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTTCGGGCGGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 654 ATCAGCTACATGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTACGGGCGGA 713
Query 602 TGGTGGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACGGTGGAGGG 661
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGGTAGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACGGTGGAGGC 773
Query 662 TATAGAGCTAGAACCTCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGAGCGATTTC 721
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TATAGAGCTAGAACCGCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGAGCGATTTC 833
Query 722 ACGGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGAG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACGGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGAG 885
Score = 460 bits (249), Expect = 2e-128
Identities = 299/322 (93%), Gaps = 7/322 (2%)
Strand=Plus/Plus
Query 164 tcttcttccttctt-ttgcctcatacccttc-ttctccttcttattcttcAAGTAGACAA 221
||||||| |||||| || | || ||| || ||||||||||||||||||||||||||||
Sbjct 142 TCTTCTT-CTTCTTCTT-CTTC-TACTAGTCTTTCTCCTTCTTATTCTTCAAGTAGACAA 198
Query 222 GTATCTTCCGTTTCTAGAAGATTTCGACCAGTTTTGGCCTCGAGACCTGTGTCCAAAAAC 281
|||||||||||||| ||| || |||| || ||||||||||||||||||||||||||||||
Sbjct 199 GTATCTTCCGTTTCAAGACGACTTCGTCCGGTTTTGGCCTCGAGACCTGTGTCCAAAAAC 258
Query 282 AGTCCTTATTACCAAAGGACCAATGGTTTATCATCTTACAATTCAATCCCCAGAGTCCCA 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AGTCCTTATTACCAAAGGACCAATGGTTTATCATCTTACAATTCAATCCCCAGAGTCCCA 318
Query 342 ACTCCTGTTGATACTGAAGTAGAAGCAGATAAGAGGGTTGTTCTATCTAGATTAGTGACT 401
||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 319 ACTCCTGTTGACACTGAAGAAGAAGCAGACAAGAGGGCTGTTCTATCTAGATTAGTGACT 378
Query 402 TTGAGGCGTAAATTGGCGGAACAGGGAGTTGATGCTGAAAACTGCCCCCCAGGACAA-CA 460
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 379 TTGAGGCGTAAATTGGCGGAACAAGGAATTGATGCTGAAAACTGCCCCCCAGGACAGTC- 437
Query 461 TAGTGGCTTGATATGTCCGACG 482
||||||||||||||||||||||
Sbjct 438 TAGTGGCTTGATATGTCCGACG 459
Score = 409 bits (221), Expect = 6e-113
Identities = 251/266 (94%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 773 GATTGTAATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 832
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GATTGTTATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 1007
Query 833 TCTAACTAAGATGTTCTTTCAGGAAAGGAAGACACGGAGGATCTTATATGGTCTTGATGA 892
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1008 TCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAGGATCTTATATGGTCTTGATGA 1067
Query 893 CATAGAAAAAACATCTGAAGTCATTATAGTTGAAGGGGAGATAGATAAACTTGCAATGGA 952
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1068 CATAGAAAAAACATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAATGGA 1127
Query 953 AGAAGCTGGTTTTCTCAATTGTGTATCCGTTCCTGATGGAGCTCCAGCGAAGGTTTCTTC 1012
||| |||||||||| ||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 1128 AGAGGCTGGTTTTCGCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGCGTCGGTTTCTTC 1187
Query 1013 GAAGGAAATCCCATCGGAAGACAAGG 1038
||||||| |||||| || |||||||
Sbjct 1188 AAAGGAAACCCCATCTGAGGACAAGG 1213
Score = 215 bits (116), Expect = 1e-54
Identities = 134/143 (94%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 69 ATGCGATTTTTGCTTCGTTTACCACAAATTCATTTTCGGAAACTCTCGTGCTCGATGTCT 128
|||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||
Sbjct 1 ATGCGATTTTTGCTTCGTTTACCACAAACCCATCTGCGGAAACTCTCTTGCTCGATGTCT 60
Query 129 GTACTCATGGGTTCGAAGCAATTCCTCGAATTTTGtcttcttccttcttttgcctcatac 188
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CTACTCATGGGTTCGAAGCAATTCCTCGAATTTTGTCTTCTTCCTTCTTTTGCCGCATAC 120
Query 189 ccttcttctccttcttattcttc 211
||||||||| |||||| ||||||
Sbjct 121 CCTTCTTCTTCTTCTTCTTCTTC 143
> Ahg912893 jgi|Araly1|912893|Al_scaffold_0001_3147
Length=945
Score = 859 bits (465), Expect = 0.0
Identities = 614/686 (90%), Gaps = 9/686 (1%)
Strand=Plus/Plus
Query 356 TGAAGTA-GAAGCAGATAAGAGGGTTGTTCTATCTAGATTAGTGACTTTGAGGCGTAAAT 414
||||| | ||||||| ||||| | ||||||||||| ||||||||| ||| ||| ||||
Sbjct 45 TGAAG-ATGAAGCAGGCAAGAGAGCTGTTCTATCTAAATTAGTGACATTGTTGCGAAAAT 103
Query 415 TGGCGGAACAGGGAGTTGATGCTGAAAACTGCCCCCCAGGACAACATAGTGGCTTGATAT 474
|||||||||| ||| | |||||| ||| ||| ||||||||||||| ||||||||||||||
Sbjct 104 TGGCGGAACAAGGAATCGATGCTCAAAGCTGTCCCCCAGGACAACGTAGTGGCTTGATAT 163
Query 475 GTCCGACGTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTTATAGCCCCTG 534
|||| ||||||||||||||| ||||||||||||||| |||| |||||| ||| |||||
Sbjct 164 GTCCAACGTGTGAAGGTGGAGACTCTGGAGAAAAAAACTTGACTCTTTACATATACCCTG 223
Query 535 ATGGTTCATCAGCTACA-TGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTT 593
||||||| ||||||| | |||| |||| ||| |||||||||| |||||||||| |||
Sbjct 224 ATGGTTCGTCAGCTA-AGTGGAGTTGC---AGGAGGAAGTGTGGTTTAAAAGGTGTAGTA 279
Query 594 CGGGCGGATGGTGGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACG 653
| || ||||||| ||||| || | ||||| |||||||||||||||||||||||||||
Sbjct 280 CAGGTGGATGGTAAGTTGGTATATAAAGATCCAATAGAGAAGGTTGAAAGAAAAATTACG 339
Query 654 GTGGAGGGTATAGAGCTAGAACCTCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGA 713
|||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 340 GTGGAGGGTATAAAGCTAGAACCACTCTGTGATGAGATTCAAGATTTTTTCGCTGCAAGA 399
Query 714 GCGATTTCACG-GAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGA 772
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GCGATTTCA-GTGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGA 458
Query 773 GATTGTAATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 832
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GATTATGATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 518
Query 833 TCTAACTAAGATGTTCTTTCAGGAAAGGAAGACACGGAGGATCTTATATGGTCTTGATGA 892
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 519 TCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAAGATCTTATATGGTCTTGATGA 578
Query 893 CATAGAAAAAACATCTGAAGTCATTATAGTTGAAGGGGAGATAGATAAACTTGCAATGGA 952
|||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 579 CATAGAAAAAGCATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAATGGA 638
Query 953 AGAAGCTGGTTTTCTCAATTGTGTATCCGTTCCTGATGGAGCTCCAGCGAAGGTTTCTTC 1012
||| ||||||||||||| |||||| || ||| ||||||||||||||| || |||||| ||
Sbjct 639 AGAGGCTGGTTTTCTCAGTTGTGTGTCTGTTGCTGATGGAGCTCCAGTGACGGTTTCATC 698
Query 1013 GAAGGAAATCCCATCGGAAGACAAGG 1038
|||||||||||||| ||| |||||
Sbjct 699 AAAGGAAATCCCATCTGAATCCAAGG 724
Score = 305 bits (165), Expect = 8e-82
Identities = 197/213 (92%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 1083 AAGGCGTCTCGAATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTATGGCGGAA 1142
|||| |||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 AAGGTGTCTCGGATTGTTCTTGCTACTGACGGAGATGGACCTGGTCAAGCTCTGGCGGAA 780
Query 1143 GAAATTGCACGGCGTTTGGGTAAAGAAAGATGTTGGCGTGTCAAGTGGCCGAAGAAAAGT 1202
||| |||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||
Sbjct 781 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGCTGGCTTGTCAAATGGCCGAAGAAAAGT 840
Query 1203 GAGGATGAACATTTTAAAGATGCAAACGAGGTTCTTATGTCTAAGGGACCTCATTTACTC 1262
||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 841 GAGGATGAATATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCAATTACTC 900
Query 1263 AAGGAAGCTATTTTAGATGCTGAGCCATATCCT 1295
|||||||||||| || ||||||||||||| |||
Sbjct 901 AAGGAAGCTATTCTAAATGCTGAGCCATACCCT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96634951565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5