BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30690.1
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912896 jgi|Araly1|912896|Al_scaffold_0001_3150 2566 0.0
> Ahg912896 jgi|Araly1|912896|Al_scaffold_0001_3150
Length=1641
Score = 2566 bits (1389), Expect = 0.0
Identities = 1564/1645 (95%), Gaps = 26/1645 (2%)
Strand=Plus/Plus
Query 132 ATGACTGCTGAAGTTAAGGTTGAGGAGAAACAGGTGGAGTCAGAGGTTGTTATTGCTCCT 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTGCTGAAGTTAAGGTTGAGGAGAAACAGGTGGAGTCAGAGGTTGTTATTGCTCCT 60
Query 192 GCTGTTGTTCCTGAGGAGACTACTGTTAAGGCTGTTGTGG-A-A-G-AG-A--CTAAG-- 242
|||||||||||||||||||| ||||| || ||||||||| | | | || | | |||
Sbjct 61 GCTGTTGTTCCTGAGGAGACCACTGTGAAATCTGTTGTGGAAGAGGAAGAAGTCAAAGCT 120
Query 243 GTTGAAGAAGATGAGAGCAAGCCTGAGGGTGTGGAGAAGAGTGCTTCCTTCAAAGAAGAG 302
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 121 GTTGAAGAAGATGAGAGCAAGCCTAAGGGTGTGGAGAAGAGTGCTTCGTTTAAAGAAGAG 180
Query 303 AGTGATTTCTTTGCTGATTTGAAAGAATCTGAGAAAAAGGCACTGAGTGATCTCAAGTCT 362
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AGTGATTTCTTTGCTGATTTGAAAGAATCTGAGAAAAAGGCTCTGAGTGATCTCAAGTCT 240
Query 363 AAGCTTGAGGAAGCTATTGTTGACAACACTCTCTTAAAGACGAAGAAGAAGGAGAGCTCT 422
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGCTTGAGGAAGCTATTGTTGAAAACACTCTCTTAAAGACGAAGAAGAAGGAGAGCTCT 300
Query 423 CCTAtgaaggagaagaaggaagaggttgtgaaacctgaagctgaggttgagaagaagaag 482
||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 301 CCTGTTAAGGAGAAGAAGGAAGAGGTGGTGAAACCAGAAGCTGAGGTTGAGAAGAAGAAG 360
Query 483 gaagaagcagcagaggagaaggttgaagaagagaagaaATCTGAGGCTGTTGTTACCGAA 542
|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GAGGAAGAAGCAGAGGAGAAGGTTGAGGAAGAGAAGAAATCTGAGGCTGTTGTTACCGAA 420
Query 543 GAAGCACCGAAAGCTGAGACTGTTGAGGCT-GTTGTTACAGAGGAGATAATCCCCaagga 601
|||||| |||||| |||||||||||||| | |||| | |||||||||||| |||||||||
Sbjct 421 GAAGCAGCGAAAGATGAGACTGTTGAGG-TGGTTGCTGCAGAGGAGATAACCCCCAAGGA 479
Query 602 agaagtgactactgttgttgagaaggt---agaagaagaaaccaa-g--gaagaagagaa 655
||||||||| ||||||||||||||||| ||||||||| | || | |||||||||||
Sbjct 480 AGAAGTGACGACTGTTGTTGAGAAGGTAGCAGAAGAAGATAGTAAGGAAGAAGAAGAGAA 539
Query 656 gaaAACCGAGGATGTTGTTACTGAAGAAGTGAAAGCTGAGACTATTGAGGTGGAGGATGA 715
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GAAAACTGAGGATGTTGTTACTGAAGAAGTGAAAGCTGAGACTATCGAGGTGGAGGATGA 599
Query 716 AGATGAGTCGGTGGATAAGGATATCGAGCTTTGGGGAGTGCCATTGCTTCCAAGCAAAGG 775
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGATGAGTCAGTGGATAAGGATATCGAGCTTTGGGGAGTGCCATTGCTTCCAAGCAAAGG 659
Query 776 AGCTGAAAGCACGGATGTTATCCTCTTGAAGTTCTTGAGAGCAAGAGACTTTAAAGTCAA 835
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCTGAAAGCACAGACGTTATCCTCTTGAAGTTCTTGAGAGCAAGAGACTTTAAAGTCAA 719
Query 836 CGAAGCCTTTGAGATGCTGAAGAAAACCCTCAAATGGAGAAAGCAAAACAAGATTGATTC 895
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 TGAAGCCTTTGAGATGCTGAAGAAAACCCTCAAATGGAGAAAGCAACACAAGATTGATTT 779
Query 896 GATCCTTGGAGAGGAGTTTGGGGAGGATCTTGCCACTGCAGCTTACATGAACGGTGTGGA 955
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 GATCCTTGGAGAGGACTTTGGGGAGGATCTTGCCTCTGCAGCTTACATGAACGGTGTGGA 839
Query 956 CCGCGAGTCCCACCCAGTTTGTTACAATGTCCACAGCGAGGAGCTTTACCAGACG--A-T 1012
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |
Sbjct 840 CCGCGAGTCCCACCCAGTTTGTTACAATGTCCACAGTGAGGAGGTTTACCAGACGACATT 899
Query 1013 TGGGTCGGAGAAGAACAGAGAGAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAAGGG 1072
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGGTCAGAGAAGAACAGAGAGAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAAGGG 959
Query 1073 AATCCAGAAGCTTAATCTTAAACCAGGAGGTGTTACTTCTCTTCTCCAGATCCACGATCT 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 AATCCAGAAGCTTAATCTTAAACCAGGAGGTGTTACTTCTCTTCTCCAGATCCATGATCT 1019
Query 1133 CAAAAACGCTCCTGGAGTGTCAAGAACAGAGATTTGGGTCGGAATCAAGAAAGTAATCGA 1192
|||||||||||||||| ||||||||||||| | ||||| ||||||||||| |||||| |
Sbjct 1020 CAAAAACGCTCCTGGAATGTCAAGAACAGATCTCTGGGTTGGAATCAAGAACGTAATC-A 1078
Query 1193 -GACTTTGCAGGACAACTATCCGGAATTCGTGTCCAGAAACATATTCATCAACGTTCCAT 1251
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TGACTTTGCAGGACAATTATCCGGAATTCGTGTCCAGAAACATATTCATCAATGTTCCAT 1138
Query 1252 TCTGGTTCTACGCCATGAGA-GCTGTCCTCTCGCCATTCTTAACTCAACGAACCAAGAGC 1310
|||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||
Sbjct 1139 TCTGGTTCTACGCCATCA-ATGCTGTCCTCTCGCCATTCTTAACGCAACGAACCAAGAGC 1197
Query 1311 AAGTTTGTTGTGGCTCGTCCCGCTAAGGTCAGAGAGACTCTTCTCAAGTACATTCCAGCT 1370
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1198 AAGTTTGTTGTGGCTCGTCCAGCTAAGGTCAAAGAGACTCTTCTCAAGTACATTCCAGCT 1257
Query 1371 GATGAGCTCCCAGTTCAGTACGGTGGGTTCAAAACAGTA-GACGATACCGAATTCTCCAA 1429
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 1258 GATGAGCTCCCAGTTCAGTACGGAGGGTTCAAAACAG-ATGACGATACCGAATTCTCCAA 1316
Query 1430 CGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGC 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGC 1376
Query 1490 TCCTGAGACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATTA 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCCTGAGACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATTA 1436
Query 1550 CAAGGAAGAGTTTGTGCCAACAGAAGAAGGAGCTTACACGGTAATAGTCCAAAAGGTGAA 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CAAGGAAGAGTTTGTGCCAACAGAAGAAGGAGCTTACACGGTAATAGTCCAAAAGGTGAA 1496
Query 1610 GAAGATGGGAGCAAATGAAGGACCAATCAGGAACAGTTTCAAGAACAGTCAGGCTGGTAA 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GAAGATGGGAGCAAATGAAGGACCAATCAGGAACAGTTTCAAGAACAGTCAGGCTGGTAA 1556
Query 1670 GATTGTTCTTACCGTTGACAATGTCTCTGGCAAGAAGAAGAAAGTTCTGTACAGGTACAG 1729
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1557 GATTGTTCTTACGGTTGACAATGTCTCTGGCAAGAAGAAGAGAGTTCTGTACAGGTACAG 1616
Query 1730 AACCAAGACTGAATCCTCTTCCTGA 1754
|||||||||||||||||||||||||
Sbjct 1617 AACCAAGACTGAATCCTCTTCCTGA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74580699710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5