BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30700.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922138 jgi|Araly1|922138|scaffold_103419.1 2473 0.0
Ahg922139 jgi|Araly1|922139|scaffold_103420.1 78.7 1e-13
> Ahg922138 jgi|Araly1|922138|scaffold_103419.1
Length=1627
Score = 2473 bits (1339), Expect = 0.0
Identities = 1533/1629 (94%), Gaps = 4/1629 (0%)
Strand=Plus/Plus
Query 32 TTTCAACGTTCAATCTCTGAAAATGAAATATGCATTGATTCTTGTTCTCTTTTTTGTTGT 91
|||| ||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||
Sbjct 1 TTTCGACGTTCAATCTCTAAAAATGAAATATACATTGATTCTTTTTCTCTTTTTCGTTGT 60
Query 92 CTTCATATGGCAATCAAGCTCATCATCAGCAAACTCGGAGACTTTCACACAATGCCTAAC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTTCATATGGCAATCAAGCTCATCATCAGCAAACTCGGAGACTTTCACACAATGCCTTAC 120
Query 152 CTCAAACTCCGACCCCAAACATCCCATCTCCCCCGCTATCTTCTTCTCCGGAAATGGCTC 211
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 121 CTCAAACTCCGACCCCAAACATCCCATCTCCCCCGCTATCTTCTTCGCCGGAAACCGCTC 180
Query 212 CTACTCCTCCGTATTACAAGCCAACATCCGTAACCTCCGCTTCAACACCACCTCAACTCC 271
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 181 CTACTCCTCCGTATTACAAGCCAACATCCGTAACCTCCGCTTCAACACCTCCTCCACTCC 240
Query 272 GAAACCCTTCCTCATAATCGCCGCAACACATGAATCCCATGTGCAAGCCGCGATTACTTG 331
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CAAACCCTTCCTCATAATCGCCGCAACACATGAATCCCATGTGCAAGCCGCGGTTACTTG 300
Query 332 CGGGAAACGCCACAACCTTCAGATGAAAATCAGAAGTGGAGGCCACGACTACGATGGCTT 391
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 301 CGGCAAACGCCACAACCTTCAGATGAAAATCAGAAGCGGAGGCCACGACTACGACGGCTT 360
Query 392 GTCATACGTTACATACTCTGGCAAACCGTTCTTCGTCCTCGACATGTTTAACCTCCGTTC 451
|||||||||||| |||||| ||||||||||||||||||| ||||||||||| || || ||
Sbjct 361 GTCATACGTTACGTACTCTCGCAAACCGTTCTTCGTCCTTGACATGTTTAATCTTCGGTC 420
Query 452 GGTGGATGTCGACGTGGCAAGTAAGACCGCGTGGGTCCAAACCGGTGCCATACTCGGAGA 511
|| ||||| |||||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 421 CGTTGATGTTGACGTGGCGAGTAAAACCGCGTGGGTCCAAACCGGTGCCATTCTTGGAGA 480
Query 512 AGTTTATTACTATATATGGGAGAAGAGCAAAACCCTAGCTTATCCCGCCGGAATTTGTCC 571
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 481 AGTTTATTACTATATATGGGAGAAGAGCAAAACCCTAGCTTATCCCGCTGGGATTTGTCC 540
Query 572 CACGGTTGGTGTCGGTGGCCATATCAGTGGTGGAGGTTACGGTAACATGATGAGAAAATA 631
|| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 541 GACAGTTGGTGTCGGCGGCCATATTAGCGGTGGAGGTTACGGTAACATGATGAGAAAATA 600
Query 632 CGGTCTCACCGTAGATAATACCATCGATGCAAGAATGGTCGACGTAAATGGAAAAATTTT 691
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 CGGTCTCACCGTAGATAATACCATCGATGCAAGAATGGTCGACGTCAATGGAAAAATTTT 660
Query 692 GGATAGAAAATTGATGGGAGAAGATCTCTACTGGGCAATAAACGGAGGAGGAGGAGGGAG 751
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 661 GGATAGAAAATTGATGGGAGAAGATCTCTATTGGGCAATAAACGGAGGAGGAGGAGGAAG 720
Query 752 CTACGGCGTCGTATTGGCCTACAAAATAAACCTTGTTGAAGTCCCAGAAAACGTCACCGT 811
|||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 721 CTACGGAGTCGTTTTGGCCTACAAAATAAACCTCGTCGAAGTCCCTGAAAACGTCACCGT 780
Query 812 TTTCAGAATCTCCCGGACGTTAGAACAAAATGCGACGGATATCATTCACCGGTGGCAACA 871
|||||||||||||||||||||||| ||||| |||||||| || || ||||||||||||
Sbjct 781 TTTCAGAATCTCCCGGACGTTAGAGCAAAACGCGACGGAGATTGTTAACCGGTGGCAACG 840
Query 872 AGTTGCACCGAAGCTTCCCGACGAGCTTTTCATAAGAACAGTCATTGACGTAGTAAACGG 931
||| |||||| |||||||||||||||| |||||||||||| |||| |||||||||||| |
Sbjct 841 AGTCGCACCGGAGCTTCCCGACGAGCTCTTCATAAGAACAATCATCGACGTAGTAAACAG 900
Query 932 CACTGTTTCATCTCAAAAGACCGTCAGGACAACATTCATAGCAATGTTTCTAGGAGACAC 991
||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 901 CACCGTTTCATCTCAAAAGACCGTCAGGGCAACATTCATAGCTATGTTTCTTGGAGACAC 960
Query 992 GACAACTCTACTGTCGATATTAAACCGGAGATTCCCAGAATTGGGTTTGGTCCGGTCTGA 1051
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AACAACGCTTCTGTCGATATTAAACCGGAGATTCCCAGAATTGGGTTTGGTCCGGTCTGA 1020
Query 1052 CTGTACCGAAACAAGCTGGATCCAATCTGTGCTATTCTGGACAAATATCCAAGTTGGTTC 1111
|||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1021 CTGTACCGAAACGAGTTGGATCCAATCTGTGCTATTCTGGACGAATATCCAAGTGGGTTC 1080
Query 1112 GTCGGAGACACTTC-TACTCCAAAGGAATCAACCCGTGAACTACCTCAAGAGGAAATCAG 1170
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTCGGAGAAAC-TCTTACTCCAAAGGAATCAACCCGTGAACTACCTCAAGAGGAAATCAG 1139
Query 1171 ATTACGTACGTGAACCGATTTCAAGAACCGGTTTAGAGTCAATTTGGAAGAAAATGATCG 1230
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1140 ATTACGTACGTGAACCGATTTCAAGAACCGGTTTAGAGTCGATTTGGAAGAAAATGATCG 1199
Query 1231 AGCTTGAAATTCCGACAATGGCTTTCAATCCATACGGTGGTG-AGATGGGGAGGATATCA 1289
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1200 AGCTTGAAATTCCGACAATGGCTTTCAATCCATACGGTGGTGCA-ATGGGGAGGATATCA 1258
Query 1290 TCTACGGTGACTCCGTTCCCATACAGAGCCGGTAATCTCTGGAAGATTCAGTACGGTGCG 1349
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 1259 TCGACGGTGACTCCGTTCCCATACAGAGCCGGGAATCTTTGGAAGATTCAGTACGCAGCG 1318
Query 1350 AATTGGAGAGATGAGACTTTAACCGACCGGTACATGGAATTGACGAGGAAGTTGTACCAA 1409
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AATTGGAGAGAAGATAGGTTAACCGACCGGTACATGGAATTGACGAGGAAGTTGTACCAA 1378
Query 1410 TTCATGACACCATTTGTTTCCAAGAATCCGAGACAATCGTTTTTCAATTACCGTGATGTT 1469
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 1379 TTCATGACACCATTTGTTTCCAAGGATCCGAGACAGTCGTTTTTCAATTATCGTGATGTT 1438
Query 1470 GATTTGGGTATTAATTCTCATAATGGTAAAATCAGTAGTTATGTGGAAGGTAAACGTTAC 1529
|||||||| ||||||||||||||||||||||| ||||| || || |||||||| ||||||
Sbjct 1439 GATTTGGGGATTAATTCTCATAATGGTAAAATGAGTAGCTACGTTGAAGGTAAGCGTTAC 1498
Query 1530 GGGAAGAAGTATTTCGCAGGTAATTTCGAGAGATTGGTGAAGATTAAGACGAGAGTTGAT 1589
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GGGAAGAAATATTTCGCAGGTAATTTCGAGAGATTGGTGAAGATTAAGACGAGAGTTGAT 1558
Query 1590 AGTGGTAATTTCTTTAGGAACGAACAGAGTATTCCTGTGTTACCATAAGTGTATTTATTT 1649
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CGTGGTAATTTCTTTAGGAATGAACAGAGTATTCCTGTGTTACCATAAGTGTATTTATTT 1618
Query 1650 GATTATTGG 1658
||| |||||
Sbjct 1619 GATAATTGG 1627
> Ahg922139 jgi|Araly1|922139|scaffold_103420.1
Length=1638
Score = 78.7 bits (42), Expect = 1e-13
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1151 CTACCTCAAGAGGAAATCAGATTACGTACGTGAACCGATTTCAAGAACCGGTTTAGAGTC 1210
|||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1130 CTACCTCAAGAGAAAATCCGATTACGTCCAAAAACCGATTTCAAGAACCGGTTTAGAGTC 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5