BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30710.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922139 jgi|Araly1|922139|scaffold_103420.1 2608 0.0
Ahg473604 jgi|Araly1|473604|fgenesh2_kg.1__3558__AT1G34575.1 745 0.0
> Ahg922139 jgi|Araly1|922139|scaffold_103420.1
Length=1638
Score = 2608 bits (1412), Expect = 0.0
Identities = 1553/1622 (96%), Gaps = 6/1622 (0%)
Strand=Plus/Plus
Query 1 ATGACATCTCTAACAACTCAAACCCTAATCATCACCATTTTTCTTCTTACAATCCCAACA 60
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 21 ATGGCATCTCTAACAACTCAAACCCTAATCATCACCATTTTTCTTCTCGCAATCCCAAGA 80
Query 61 TCCTTCGCATCACCACCATCACTCGAAGACGTTTTCGCACAATGCGTCA-CCGATTTTAA 119
|| |||||||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 81 TCATTCGCATCACCACCATCACTCGAAGACGTTTTCGCACAATGC-TTAGCTGATTTTAA 139
Query 120 ACCTTCAAATCCAAAATCCCCAATCCAAAACTACATATACACTCAACGAAGCCCTAATTT 179
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 140 ACCTTCAAATCCAAAATCCCCAATCCAAAACTTCATCTACACTCAACAAAGCCCTAATTT 199
Query 180 CCTCACAATCCTTAACAACTACGTCCGTAACCTTCGTTACTTCAACAACATGACACGTAA 239
|||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 200 CCTCACAATCCTTAACAATTACGTCCGTAATCTTCGTTACTTCAACAACACGACACGTAA 259
Query 240 ACCCGTAGCGATTGTAGCTGCCGCGGATGTCACTCACATCCAGGCTACAATCACTTGTGC 299
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 260 ACCCGTCGCGATTGTAGCTGCGGCGGATGTCACTCACATCCAGGCTACAATCACTTGCGC 319
Query 300 CAAGAAACTCGGCCTCCAGCTCCGGATCCGCAGTGGAGGACATGACTACGACGGTATGTC 359
|||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 320 CAAGAATCTCGGCCTCCAGCTCCGGATACGCAGCGGAGGCCATGACTACGACGGTATGTC 379
Query 360 GTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCTATCAATAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCTATCAATAT 439
Query 420 AGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTA 499
Query 480 CGGAGTCGCCAACAAAAGCAATGACCTCCGTGGATTTCCTGCCGGAATCTGTCCTGGTTT 539
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 500 CGGAGTCGCCAACAAAAGCAATGATCTTCGTGGATTTCCTGCCGGAATCTGCCCTGGTTT 559
Query 540 AGGCGCTGGTGGACATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTT 599
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 560 AGGCGCTGGTGGACATTTTAGCGGTGGCGGTTATGGAAACATGATGAGGAAATACGGTTT 619
Query 600 ATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTTTTGGACCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 620 ATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTCTTGGACCG 679
Query 660 GAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCTGCTAGTTTCTG 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 680 GAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCCGCTAGTTTCTG 739
Query 720 TGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTTCC-AGCTAAAGTCACAGTCTTTA 778
|||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |
Sbjct 740 TGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTGCCGA-CTAAAGTCACAGTCTTCA 798
Query 779 ACATTGAAACGTTTGGAAACACAGGAAGCGTGAACACCACGGAACTTGTAGCCAAATGGC 838
|| |||||||| ||||||||| |||||| ||||||| ||||||||||||| |||||||||
Sbjct 799 ACGTTGAAACGGTTGGAAACAGAGGAAGTGTGAACATCACGGAACTTGTAACCAAATGGC 858
Query 839 AAGAGATCGCAGACAAGATTGACAATGATCTGTTCATAAGATTAACTTTAGGCTCAAGCA 898
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 859 AAGAGATCGCAGACAAGATCGACAACGATCTGTTCATAAGATTAACTTTAGGCTCAAGCA 918
Query 899 ACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAATCTTCTAG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 919 ACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAAGCTTCTAG 978
Query 959 AAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGATCAAAAGAGAGTGTATTGAAATGA 1018
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 979 AAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGAACAAAACAGAGTGTATAGAAATGA 1038
Query 1019 AATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCCGGTACAGCACCAACAACGA 1078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1039 AATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCAGGTACAGCACCAACAACGA 1098
Query 1079 GTATGCTAAACCGGATCCCACAAAAGCAAATCTACCTCAAGAGAAAATCCGATTACGTCC 1138
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 GTATGCTAAACCGGATCCCGCAAAAGCAAATCTACCTCAAGAGAAAATCCGATTACGTCC 1158
Query 1139 AAAAACCGATTTCACGAACCGGTTTAGAGTCAATATTCAAGATCATGACAGAGAACGAGA 1198
|||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 1159 AAAAACCGATTTCAAGAACCGGTTTAGAGTCGATATTCAAGGTCCTGACAGAGAACGAGA 1218
Query 1199 ACGTCACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGTGAGATTCCATCGACCGAGA 1258
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1219 ACGTGACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGCGAGATTCCATCGACCGAGA 1278
Query 1259 CCGCTTTCCCTCACAGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACTGGTTCG 1318
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 CCGCTTTCCCGCACCGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACTGGTTCG 1338
Query 1319 TGCCAGGTGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACAGAAAGATTGTTCGAGGCAA 1378
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1339 TGCCAGGGGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACGGAAAGAGTGTTCGAGGCAA 1398
Query 1379 TGAGCCCTTACGTGTCAAAGAATCCAAGAGAGGCGTTTTTGAACTATAGAGACGTTGACA 1438
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1399 TGAGCCCTTACGTGTCAAAGAATCCAAGAGAAGCGTTTTTGAACTATAGAGACGTCGACA 1458
Query 1439 TTGGAAAGAGCTTAAACTCAACGTACGAGGAAGGTAAAGTGTACGGATTTAAGTATTTTA 1498
|||| |||||||| || || ||||||||||||||||||||||||||| |||| |||||||
Sbjct 1459 TTGGCAAGAGCTTGAATTCGACGTACGAGGAAGGTAAAGTGTACGGAGTTAAATATTTTA 1518
Query 1499 AGGATAACTTCGAGAAATTGGTTAAGATCAAGAGCAGAGTTGATCCCGACAACTTTTTCC 1558
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1519 AGGATAACTTCGAGAAATTGGTTAATATCAAGAGCAGAGTTGATCCCGACAACTTTTTCC 1578
Query 1559 GGTACGAGCAGAGCATTCCAGTGCTCTCCAGCCACTAGAGAGACTAGAGACACACTTCTA 1618
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1579 GGTACGAGCAGAGCATTCCAGTGCTCTCCAGCCACTAGAGA--CTAGAGACACACTTCTA 1636
Query 1619 TT 1620
||
Sbjct 1637 TT 1638
> Ahg473604 jgi|Araly1|473604|fgenesh2_kg.1__3558__AT1G34575.1
Length=1104
Score = 745 bits (403), Expect = 0.0
Identities = 662/786 (84%), Gaps = 22/786 (3%)
Strand=Plus/Plus
Query 1 ATGACATC-TCTAACAACTCAAACCCTAATCATCACCA-TTTTTCTTCTTACAATCCCAA 58
|||| ||| || ||||||||||||| ||||| ||| || ||||||| |||| ||| ||||
Sbjct 1 ATGAAATCTTC-AACAACTCAAACCATAATCGTCA-CATTTTTTCTCCTTATAATTCCAA 58
Query 59 CATCCTTCGCATCACCACCATCACTCGAAGAC-GTTTTCGCACAATG-CGTCACCGA-TT 115
|||| |||||| |||||||| |||||||||| | |||| ||||||| | ||||| | ||
Sbjct 59 CATCATTCGCAGCACCACCAAAACTCGAAGACAG-TTTCACACAATGTC-TCACC-ACTT 115
Query 116 TTAAACCTTCAAATCCAAAATCCCCAATCCAAAACTACATATACACTCAACG-AAGCCCT 174
| |||||||| | ||||| | |||||||||||||| || |||||| ||| | || ||||
Sbjct 116 TCAAACCTTCCGACCCAAAGTTCCCAATCCAAAACTTCACATACACGCAA-GAAAACCCT 174
Query 175 AATTTCCTCA-CAATCCTTAACAACTACGTCCGTAACCTTCGTTACTTCAACAACATGAC 233
|| ||||||| | || || |||||||||||||||||||| |||||||||||| || ||
Sbjct 175 AACTTCCTCATC-ATTCTCAACAACTACGTCCGTAACCTCCGTTACTTCAACGGTATTAC 233
Query 234 ACGTAAACCCGTAGCGATTGTAGCTGCCGCGGA-TGTCACTCACATCCAGGCTACAAT-C 291
||||||||| || ||||| || ||||| || | | ||||||| ||||| ||||||||
Sbjct 234 ACGTAAACCGGTGGCGATCGTGGCTGCGGCTCACT-TCACTCATATCCAAGCTACAATAA 292
Query 292 ACTTGTGCCAAGAAACTCGGCCTCCAGCTCCGGATCCGCAGTGGAGGACATGACTACGAC 351
|| || ||||| ||||| ||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 293 AC-TGCGCCAAAAAACTTGGCCTCCAGCTTCGAATCCGTAGTGGAGGACACGACTACGAT 351
Query 352 GGTATGTCGTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCT 411
|| ||||| |||||||| ||| | |||||||| ||||| |||||||| ||||| || ||
Sbjct 352 GGAATGTCTTATTTATCCACCGTCGATTTCGTCGTCCTCGACATGTTTAATCTACGTTCA 411
Query 412 ATCAATATAGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAG 471
||| | || ||||||||||| || |||||||| |||||||| ||||| || || ||||||
Sbjct 412 ATCGAGATTGATCCTAAACTGGATACCGCGTGTGTCCAATCGGGTGCCACCCTAGGAGAG 471
Query 472 ATCTACTACGGA-GTCGCCAACAAAAGCAATGACCTCCGTGGATTTCCTGCCGGAATCTG 530
||||||||| | || |||||||||||||| ||||||| || || ||||| ||||||||
Sbjct 472 ATCTACTAC-AACGTTGCCAACAAAAGCAACAACCTCCGAGGGTTCCCTGCAGGAATCTG 530
Query 531 TCCTGGTTTAGGCGCTGGTGGACATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAA 590
|| ||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 531 CCCCGGTCTCGGTGCTCGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAA 590
Query 591 ATACGGTTTATCGATCGATAACATTATAGACGCTAAGA-TCGTTGACGCTAAAGGAAGAG 649
|||||||||||| || ||||||| |||||||||||||| | ||||| ||||| | |||||
Sbjct 591 ATACGGTTTATCTATTGATAACAATATAGACGCTAAGACT-GTTGATGCTAACGCAAGAG 649
Query 650 TTTTGGACCGGAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCTG 709
| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
Sbjct 650 TATTGGACCGGAGCTCAATGGGAGAAGATCTTTTCTGGGCCATACGAGGCGGTGGAGCCG 709
Query 710 CTAGTTTCTGTGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTTCCAGCTAAAGTCA 769
|||||||||||||||||||||| |||||||| || ||||||||||| || | ||||| |
Sbjct 710 CTAGTTTCTGTGTTGTCTTAGCCTGGAAGATCAAACTTGTTCCGGTGCCGGAGAAAGTTA 769
Query 770 CAGTCT 775
||||||
Sbjct 770 CAGTCT 775
Score = 244 bits (132), Expect = 1e-63
Identities = 166/183 (91%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 1294 ATTCAGTACGCAGCAAACTGGTTCGTGCCAGGTGAAGCAGTGGCTAAAGATTGCTTGAGC 1353
||||||||| || | |||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 847 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 906
Query 1354 CAGACAGAAAGATTGTTCGAGGCAATGAGCCCTTACGTGTCAAAGAATCCAAGAGAGGCG 1413
||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 907 CAGACGGAAAGAGTGTTCAAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 966
Query 1414 TTTTTGAACTATAGAGACGTTGACATTGGAAAGAGCTTAAACTCAACGTACGAGGAAGGT 1473
||||||||||||||||||||||||||||| |||| ||| || || |||||||||||||||
Sbjct 967 TTTTTGAACTATAGAGACGTTGACATTGGGAAGAACTTGAATTCGACGTACGAGGAAGGT 1026
Query 1474 AAA 1476
|||
Sbjct 1027 AAA 1029
Score = 91.6 bits (49), Expect = 2e-17
Identities = 65/72 (90%), Gaps = 3/72 (4%)
Strand=Plus/Plus
Query 1513 AAA-TTGGTTAAGATCAAGAGC-AGAGTTGATCCCGACAACTTTTTCCGGTACGAGCAGA 1570
||| |||||| || | |||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 1028 AAAGTTGGTTCAGGTTAAGA-CTAGAGTTAATCCCGACAACTTTTTCCGGTACGAGCAGA 1086
Query 1571 GCATTCCAGTGC 1582
||||||||||||
Sbjct 1087 GCATTCCAGTGC 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5