BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G30720.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922140 jgi|Araly1|922140|scaffold_103421.1 2392 0.0
Ahg473304 jgi|Araly1|473304|fgenesh2_kg.1__3258__AT1G30730.1 1524 0.0
> Ahg922140 jgi|Araly1|922140|scaffold_103421.1
Length=1622
Score = 2392 bits (1295), Expect = 0.0
Identities = 1510/1615 (93%), Gaps = 10/1615 (1%)
Strand=Plus/Plus
Query 19 AAACAAAATGGAGAAATTGCTCGTGATCTCT-TTGCTACTACTGATCTCAACATCAGTTA 77
||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||| | |
Sbjct 15 AAA-AAAATGGAGAAATGGCTCGTGATCTCTCTT-CTACTACTGATCTCAACATCAATCA 72
Query 78 CAACTTCACAATCCGTGACCGATCCAATAGCTTTCCTCCGATGTCTCGATAGACAACCAA 137
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 73 CAACTTCACAATCCGTGACCGATCCAATAGCTTTCCTTCGATGTCTCGATAGACAACCAA 132
Query 138 CGGACCCAACAAGTCCTAACTCCGCCGTTGCTTACATCCCAACAAACTCTTCTTTCACCA 197
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 133 CGGACCCAACAAGTCCTAACTCCGCCGTCGCTTATATCCCAACAAACTCTTCCTTCACCG 192
Query 198 CTGTCCTCCGCAGCCGTATACCTAACCTCCGTTTCGACAAACCCACTACTCCAAAACCCA 257
| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 193 CCGTCCTCCGCCGCCGTATACCTAACCTCCGTTTCGACAAACCCACTACTCGTAAACCCA 252
Query 258 TCTCCGTGGTGGCTGCCGCCACGTGGACACACATACAAGCTGCTGTAGGATGCGCACGTG 317
||||||| || || || ||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 253 TCTCCGTCGTTGCAGCTACCACGTGGACACATATACAAGCTGCTATAGGATGCGCACGCG 312
Query 318 AGCTCTCTCTCCAAGTCAGGATCAGAAGTGGTGGCCACGACTTCGAAGGACTCTCTTACA 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 AGCTCTCTCTCCAAGTCAGGATCAGAAGTGGTGGCCACGACTTCGAAGGACTCTCTTACA 372
Query 378 CTTCCACCGTCCCTTTCTTTGTTCTCGACATGTTCGGTTTTAAAACCGTGGACGTAAATC 437
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 373 CTTCCACCGTCCCTTTCTTTGTTCTCGACATGTTCGGTTTTAAATCCGTGGACGTGAATC 432
Query 438 TCACCGAGAGAACGGCTTGGGTTGATTCTGGTGCTACCCTCGGAGAGCTTTACTATAGAA 497
| |||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
Sbjct 433 TAACCGAGAGAACGGCTTGGGTTGATTCTGGTGCTACCGTCGGAGAGCTTTATTACCGGA 492
Query 498 TCTCTGAGAAGAGCAATGTTCTTGGATTTCCGGCGGGTTTGTCTACCACATTGGGCGTTG 557
| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 493 TAGCTGAGAAGAGCAATGTTTTTGGATTTCCGGCGGGTTTGTCTACGACATTGGGCGTCG 552
Query 558 GTGGACACTTTAGCGGCGGAGGATACGGTAATCTGATGAGAAAGTATGGTTTGTCGGTGG 617
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 553 GTGGACATTTTAGCGGCGGAGGATACGGTAATCTGATGAGAAAGTATGGATTGTCGGTGG 612
Query 618 ATAACGTTTTCGGCTCCGGGATCGTTGATTCGAACGGAAATATCTTCACCGATCGGGTTT 677
|||| ||| ||||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 613 ATAATGTTGTCGGCTCCGGGATCGTTGATTCGAATGGGAACATCTTCACCGATCGAGTTT 672
Query 678 CGATGGGGGAAGACCGTTTTTGGGCGATTCGTGGAGGTGGTGCAGCGAGCTACGGTGTTG 737
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 673 CGATGGGGGAAGACCGTTTCTGGGCGATTCGAGGTGGTGGTGCAGCGAGCTACGGTGTTG 732
Query 738 TCCTCGGCTACAAGATCCAGCTAGTACCGGTGCCTGAGAAAGTTACGGTTTTTAAAGTCG 797
| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 733 TACTCGGCTACAAGATCCAGCTAGTACCGGTGCCAGAGAAAGTTACTGTTTTTAAAATCG 792
Query 798 GAAAAACTGTCGGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAGAGTTTTGCTCATA 857
||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 793 GAAAACCCGTCGGAGAAGGAGCGGGTGATCTTATAATGAAGTGGCAGAGTTTTGCTCATA 852
Query 858 GTACGGATCGGAATTTGTTCGTGAGGTTAACTTTGACTTTAGTCAACGGTACGAAGCCTG 917
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 853 GTACGGATCGGAATTTGTTCGTGAGGTTGACGTTGACTTTGGTCAACGGTACGAAGCCTG 912
Query 918 GTGAGAATACGGTTTTAGCGACTTTCATTGGGATGTATTTAGGCCGGTCGGATAAGCTGT 977
|||| || | |||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 913 GTGAAAAGATGGTTTTGGCTTCTTTTATTGGGATGTATTTAGGCCGGTCGGATAAGCTGT 972
Query 978 TGACCGTGATGAACCGGGATTTCCCGGAGTTGAAGCTGAAGAAAACCGATTGTACCGAGA 1037
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 973 TGACCGTGATGAACCGGGATTTCCCGGAGTTGAAGTTGAAGAAAACCGATTGTACCGAGA 1032
Query 1038 TGAGATGGATCGATTCGGTTCTGTTTTGGGACGATTATCCGGTTGGTACACCGACTTCTG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TGAGATGGATCGATTCGGTTCTGTTTTGGGACGATTATCCGGTTGGTACACCGACTTCTG 1092
Query 1098 TGCTACTAAATCCGCTAGTCGCAAAAAAGTTGTTCATGAAACGAAAATCGGACTACGTGA 1157
|||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1093 TGCTGCTAAACCCG---GTCGCAAAAAAGTTGTTCATGAAACGAAAATCTGACTACGTGA 1149
Query 1158 AGCGTCTGATTTCGAGAACCGATC-TCGGTTTGATACTCAAGAAATTGGTAGAGGTTGAG 1216
|||||| |||||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 1150 AGCGTCCGATTTCGAGAGCCGG-CATCGATTTGATACTCAAGAAATTGGTAGAGGTTGAG 1208
Query 1217 AAAGTTAAAATGAATTGGAATCCGTATGGAGGAAGGATGGGTGAGATCCCGAGTTCGAGG 1276
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1209 AAAGTTAAAATGAATTGGAATCCGTACGGAGGAAGAATGGGTGAGATCCCGAGTTCGAGG 1268
Query 1277 ACACCATTCCCACATAGAGCAGGCAATTTGTTCAACATTGAGTATATCATAGACTGGTCA 1336
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 ACACCTTTCCCACATAGAGCAGGCAATTTGTTCAACATTGAGTATATCATAGACTGGTCC 1328
Query 1337 GAAGCTGGAGATAATGTGGAGAAGAAA-TATTTGGCACTCGCGAATGAATTTTATAGATT 1395
|||||||||||||| || |||| |||| |||||||||||||||||||| || || ||||
Sbjct 1329 GAAGCTGGAGATAACGTCGAGA-GAAAATATTTGGCACTCGCGAATGAGTTATACGGATT 1387
Query 1396 CATGACCCCGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTTGA 1455
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1388 CATGACCCCGTACGTGTCTAGTAGTCCGAGGGAGGCGTTTTTGAATTACCGTGACCTTGA 1447
Query 1456 CATAGGGTCAAGTGTTAAGTCTACGTACCAGGAAGGTAAAATCTACGGGGCTAAATATTT 1515
||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 1448 CATAGGGTCAAGTGTTAAGTCCACGTACCAGGAAGGTAAAATCTATGGGGATAAATATTT 1507
Query 1516 CAAGGAGAATTTCGAGAGATTAGTGGATATTAAAACCACGATTGATGCGGAAAACTTTTG 1575
||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1508 CAAAGACAATTTCGAGAGACTAGTGGATATTAAAACCACGATCGATGCGGAAAACTTTTG 1567
Query 1576 GAAAAACGAACAAAGCATTCCGGTTAGAAGATAATACGTACGAGATGAATGTTGT 1630
||||||||||||||||||||||||| |||| ||||| || | ||| |||||||||
Sbjct 1568 GAAAAACGAACAAAGCATTCCGGTTCGAAGTTAATAAGTTCAAGACGAATGTTGT 1622
> Ahg473304 jgi|Araly1|473304|fgenesh2_kg.1__3258__AT1G30730.1
Length=1581
Score = 1524 bits (825), Expect = 0.0
Identities = 1329/1570 (85%), Gaps = 44/1570 (3%)
Strand=Plus/Plus
Query 57 TACTGATCTCAACATCAGTTACAACTTCACAATCCGTGACCGATCCAATAG-CTTTCCTC 115
|||| |||||| |||||| ||||||| || ||| |||||||| || ||||||||
Sbjct 29 TACTAATCTCAGTTTCAGTTGCAACTTCCCAGTCCCAAACCGATCC-GGAGACTTTCCTC 87
Query 116 CGATGTCTCGAT-AGACAACCAACGGACCCAACAAGTCCT-AACTCCGCCGTTGCTTACA 173
|||||||||| | ||| | | | |||| || || | | ||||| ||| | ||||
Sbjct 88 CGATGTCTCG-TAAGAGAGGGATCAAACCC-GCAGGTTTTCATCTCCGACGTCACCTACA 145
Query 174 TCCCAACAAACTCTTCTTTCACCACTGTCCTCCGCAGCCGTATACCTAACCTCCGTTTCG 233
||||| ||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 146 TCCCATCAAACTCCTCTTTCACCACCGTCCTCCGCCGCCGCATACCTAACCTCCGTTTCG 205
Query 234 ACAAACCCACTACTCCAAAACCCATCTCCGTGGTGGCTGCC-GCCACGTGGACACACA-T 291
|||||||||| || |||||||||||| || | | | || |||| ||| |||||| |
Sbjct 206 ACAAACCCACCACCCCAAAACCCATCGCCATCATCAC-CCCTACCACATGGTCACACATT 264
Query 292 ACAAGCTGCTG-TAGGATGCGCACG-TGAGCTCTCTCTCCAAGTCAGGATCAGAAGTGGT 349
| | || | ||| |||||||| | | ||| || |||||||||| ||| |||| ||
Sbjct 265 TC-TCCGGC-GCTAGCTTGCGCACGCTTA-CTCCCTGTCCAAGTCAGAATCCGAAGCGGC 321
Query 350 GGCCACGACTTCGAAGGACTCTCTTACACTTCCACCGTC-CCTTTCTTTGTTC-TCGACA 407
||||| || |||||||||||||||||||| ||||||| | || ||||||| || |||||
Sbjct 322 GGCCATGATTTCGAAGGACTCTCTTACACCTCCACCG-CTCCGTTCTTTG-TCATCGACT 379
Query 408 TGTTCGGTTTTAAAACCGTGGACGTAAATCTCACCG-AGAGAACGGCTTGGGTTGATTCT 466
|| || || ||| |||| ||||| |||||||| | || ||||||||||||||||| |
Sbjct 380 TGCTCAACTTCAAATCCGTTGACGTGAATCTCACGGAAG-GAACGGCTTGGGTTGATACC 438
Query 467 GGTGCTACCCTCGGAGAGCTTTACTATAGAATCTCTGAGAAGAGCAATGTTCTTGGATTT 526
|| || || ||||||||||||| |||| |||| ||||||| |||||||||||||| |||
Sbjct 439 GGCGCCACAATCGGAGAGCTTTATTATAAAATCGCTGAGAAAAGCAATGTTCTTGGGTTT 498
Query 527 CCGGCGGGTTTGTCTACCACATTGGGCGTTGGTGGACACT-TTAGCGGCGGAGGATACGG 585
||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| |||||
Sbjct 499 CCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACA-TATTAGCGGCGGAGGGTACGG 557
Query 586 TAA-TCTGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTTTCGGCTCCGGGATCGTTG 644
|| | ||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
Sbjct 558 -AACTATGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTGTCGGCTCCAGGATCATCG 616
Query 645 ATTCGAACGGAAATATCTTCACCGATCGGGTTTCGATGGGGGAAGACCGTTTT-TGGGCG 703
| || ||||| |||| || | |||||| || || ||||||||||| | |||| ||||||
Sbjct 617 ACTCTAACGGGAATACCTACTTCGATCGAGTGTCCATGGGGGAAGAGC-TTTTCTGGGCG 675
Query 704 ATTCGTGGAGGTGGTGCAGCGAGCTACGGTGTTGTCCTCGGCTACAAGATCCAGCTAGTA 763
|||| |||||||| || || || | |||| | || | || ||||| |||| | | ||
Sbjct 676 GTTCGAGGAGGTGGAGCCGCAAGTTTCGGTATCGTGATGGGATACAAAATCCGGTTGGTT 735
Query 764 CCGGTGCCTGAGAAAGTTACGGTTTTTAAAGTCGGAAAAACTGTCGGAGAAGGAGCCGTT 823
|||||||| |||||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 736 CCGGTGCCGGAGAAAGTAACGGTTTTTAGCGTTGGAAAAACCGTCGGAGAAGGAGCCGTT 795
Query 824 GATCTTATAATGAAGTGGCAGAGTTTTGCTCATAGTACGGATCGGAATTTGTTCGTGAGG 883
|||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||| |
Sbjct 796 GATCTTATAACGAAGTGGCAGAATTTTTCTCACAGTACGGATCGGAATTTGTTCGTGAAG 855
Query 884 TTAACTTTGACTTTAGTCAACGGTACGAAGCCTGGTGAGAATACGGTTTTAGCGACTTTC 943
| ||||||||||| ||||||||||| ||||| ||||| || || |||||||||||||||
Sbjct 856 CTGACTTTGACTTTGGTCAACGGTACAAAGCCGGGTGAAAAAACTGTTTTAGCGACTTTC 915
Query 944 ATTGGGATGTATTTAGGCCGGTCGGATAAG-CTGTTGACCGTGATGAACCGGGATTTCCC 1002
||||||||| |||||||| ||| ||||||| | ||||| |||||||||||||||||||||
Sbjct 916 ATTGGGATGAATTTAGGCGGGTTGGATAAGAC-GTTGAACGTGATGAACCGGGATTTCCC 974
Query 1003 GGAGTTGAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTT 1062
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 AGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTT 1034
Query 1063 TTGGGACGATTATCCGGTTGGTACACCGACTTCTGTGCTACTAAATCCGCTAG--TCGCA 1120
||||| || || |||| |||| ||||| ||||||||| ||||||| || |||| | ||
Sbjct 1035 TTGGGCCGGTTTTCCGATTGGCACACCAACTTCTGTGTTACTAAA-CC-CTAGAGTTACA 1092
Query 1121 AAAAAGTTGTTCATGAAACGAAAATCGGACTACGTGAAGCGTCTGATTTCGAGAACCGAT 1180
|||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1093 AAAAAGTTGTTCATGAAACGGAAATCAGACTACGTGAAGCGTCCGATTTCGAGAACCGGC 1152
Query 1181 CTCGGTTTGATACTCAAGAAATTGGTAGAGGTTGAGAAAGTTAAAATGAATTGGAATCCG 1240
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||
Sbjct 1153 CTCGGTTTGATACTCAAGAAATTGGTTGAGGTTGATAAAGTTGAAATGAATTGGATTCCA 1212
Query 1241 TATGGAGGAAGGATGGGTGAGATCCCGAGTTCGAGGACACCATTCCCACATAGAGCAGGC 1300
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1213 TATGGAGGAAGAATGGGGGAGATCCCGAGTTCGAGGACACCTTTCCCACATAGAGAAGGA 1272
Query 1301 AATTTGTTCAACATTGAGTATATCATAGACTGGTCAGAAGCTGGAGATAATGTGGAGAAG 1360
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||
Sbjct 1273 AATTTGTTCAACATTGAGTATATCATAGACTGGTCGGAAGCTGGAGATGACGTGGAAAAG 1332
Query 1361 AAAT-ATTTGGCAC-TCGCGAA-TGA-ATTTTATAGATTCATGACCCCGTACGTGTCTAG 1416
| | |||||||| | || || ||| || | | | |||||||||||| |||||||||||
Sbjct 1333 GA-TCATTTGGCAAGT-GC-AAGTGAGATGT-ACAAATTCATGACCCCATACGTGTCTAG 1388
Query 1417 TAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTTGACATAGGGTCAAGTGTTAAGTC 1476
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 1389 TAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTCGACATAGGGTCAGGTGTTAATTC 1448
Query 1477 TACGTACCAGGAAGGTAAAATCTACGGGGCTAAATATTTCAAGGAGAATTTCGAGAGATT 1536
||||||||||||||||||||||| ||||| ||||||||||| || |||||||| || ||
Sbjct 1449 CACGTACCAGGAAGGTAAAATCTATGGGGCGAAATATTTCAAAGACAATTTCGAAAGGTT 1508
Query 1537 AGTGGATATTAAAACCACGATT-GATGCGGA-AAACTTTTGGAAAAACGAACAAAGCATT 1594
||||||||| ||||||| | || |||| | ||||||||||| ||||||||||| |||
Sbjct 1509 AGTGGATATCAAAACCAAG-TTCGATGAA-ATAAACTTTTGGAGGAACGAACAAAGTATT 1566
Query 1595 CCGGTTAGAA 1604
|||||| |||
Sbjct 1567 CCGGTTCGAA 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5